Wall clock time and date at job start Tue Mar 31 2020 03:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00123 * 2 1 4 4 H 1.08994 * 109.47038 * 330.00147 * 3 2 1 5 5 C 1.53002 * 109.47116 * 89.99877 * 3 2 1 6 6 C 1.50695 * 109.47026 * 209.99720 * 3 2 1 7 7 O 1.21282 * 120.00352 * 0.02562 * 6 3 2 8 8 N 1.34780 * 119.99895 * 179.97438 * 6 3 2 9 9 C 1.47483 * 125.66190 * 0.02818 * 8 6 3 10 10 C 1.55022 * 104.90076 * 203.99664 * 9 8 6 11 11 C 1.54516 * 101.53468 * 323.61733 * 10 9 8 12 12 C 1.47179 * 125.66161 * 180.02562 * 8 6 3 13 13 C 1.52275 * 110.20943 * 153.22754 * 11 10 9 14 14 C 1.53310 * 109.41924 * 182.19993 * 13 11 10 15 15 N 1.46924 * 108.70663 * 306.48348 * 14 13 11 16 16 C 1.36936 * 120.56433 * 234.21765 * 15 14 13 17 17 H 1.07991 * 120.00140 * 27.95104 * 16 15 14 18 18 C 1.38814 * 119.99688 * 207.94543 * 16 15 14 19 19 N 1.31617 * 120.00354 * 17.45444 * 18 16 15 20 20 Si 1.86805 * 119.99834 * 197.44455 * 18 16 15 21 21 H 1.48503 * 109.46799 * 60.00556 * 20 18 16 22 22 H 1.48507 * 109.46892 * 180.02562 * 20 18 16 23 23 H 1.48489 * 109.47275 * 300.00392 * 20 18 16 24 24 C 1.46931 * 118.87008 * 54.24234 * 15 14 13 25 25 C 1.52272 * 110.20656 * 276.41817 * 11 10 9 26 26 H 1.08999 * 109.46996 * 59.99728 * 1 2 3 27 27 H 1.08998 * 109.47301 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46610 * 300.00075 * 1 2 3 29 29 H 1.08999 * 109.46974 * 179.97438 * 5 3 2 30 30 H 1.09000 * 109.47419 * 300.00198 * 5 3 2 31 31 H 1.09003 * 109.47223 * 60.00191 * 5 3 2 32 32 H 1.09002 * 110.35440 * 322.85121 * 9 8 6 33 33 H 1.08996 * 110.35242 * 85.03149 * 9 8 6 34 34 H 1.08992 * 111.01598 * 81.68410 * 10 9 8 35 35 H 1.09004 * 111.01436 * 205.56016 * 10 9 8 36 36 H 1.09000 * 109.90810 * 297.88277 * 12 8 6 37 37 H 1.08998 * 109.91177 * 59.14819 * 12 8 6 38 38 H 1.08996 * 109.47868 * 302.18880 * 13 11 10 39 39 H 1.08998 * 109.47538 * 62.21317 * 13 11 10 40 40 H 1.09004 * 109.59555 * 186.71739 * 14 13 11 41 41 H 1.08994 * 109.59890 * 66.25782 * 14 13 11 42 42 H 0.97001 * 120.00210 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.60031 * 185.99417 * 24 15 14 44 44 H 1.08998 * 109.73055 * 65.59564 * 24 15 14 45 45 H 1.08998 * 109.47850 * 297.77664 * 25 11 10 46 46 H 1.08997 * 109.47962 * 57.80377 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2177 1.7714 1.4425 6 6 3.3386 1.2638 -0.7103 7 8 3.7472 0.2192 -1.1716 8 7 4.0722 2.3877 -0.8339 9 6 3.6974 3.7196 -0.3235 10 6 4.4841 4.7211 -1.2074 11 6 5.8123 3.9627 -1.4265 12 6 5.3804 2.4895 -1.5006 13 6 6.4574 4.3988 -2.7351 14 6 7.7441 3.5966 -2.9613 15 7 8.5964 3.7277 -1.7718 16 6 9.8904 4.1608 -1.8865 17 1 10.1709 4.8146 -2.6990 18 6 10.8414 3.7596 -0.9584 19 7 10.6100 2.7188 -0.1868 20 14 12.4500 4.6969 -0.8047 21 1 12.1674 6.1088 -0.4414 22 1 13.2881 4.0720 0.2501 23 1 13.1734 4.6545 -2.1008 24 6 8.0368 3.3856 -0.4569 25 6 6.7481 4.1893 -0.2469 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.6615 2.7669 1.4425 30 1 1.2569 1.8014 1.9564 31 1 2.8830 1.0774 1.9564 32 1 2.6247 3.8793 -0.4324 33 1 3.9910 3.8216 0.7212 34 1 3.9716 4.8934 -2.1538 35 1 4.6525 5.6598 -0.6794 36 1 6.1090 1.8630 -0.9860 37 1 5.2913 2.1806 -2.5421 38 1 5.7667 4.2180 -3.5588 39 1 6.6952 5.4614 -2.6867 40 1 8.2699 3.9870 -3.8327 41 1 7.4973 2.5470 -3.1205 42 1 11.2747 2.4382 0.4615 43 1 8.7556 3.6370 0.3230 44 1 7.8132 2.3195 -0.4183 45 1 6.9891 5.2497 -0.1726 46 1 6.2611 3.8619 0.6716 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040625817.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:13 Heat of formation + Delta-G solvation = -75.939262 kcal Electronic energy + Delta-G solvation = -25541.583216 eV Core-core repulsion = 22045.085414 eV Total energy + Delta-G solvation = -3496.497802 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.73109 -40.15333 -38.47571 -37.40193 -34.92814 -33.17032 -32.13533 -31.63764 -30.58709 -28.11523 -27.70969 -26.56552 -24.94518 -23.95751 -23.65164 -22.19740 -20.63305 -19.74118 -18.59456 -18.30932 -17.48905 -17.02002 -16.88844 -16.74090 -16.12738 -15.72020 -15.43012 -15.22550 -14.88837 -14.77341 -14.59394 -14.38355 -14.03899 -13.76041 -13.56478 -13.37794 -13.20353 -13.07182 -12.97840 -12.73024 -12.62880 -12.54181 -12.33109 -12.18243 -12.05039 -11.92462 -11.82622 -11.45961 -11.06869 -11.05031 -10.98231 -10.53952 -10.50676 -9.70708 -8.66346 -7.86449 -5.32445 1.46754 1.48671 1.48773 1.56032 1.72701 2.51748 2.93728 3.26298 3.38520 3.62221 3.68901 3.74769 3.81918 3.88185 4.01426 4.24457 4.26849 4.41968 4.46248 4.54328 4.55734 4.61456 4.67036 4.68385 4.72048 4.75299 4.80958 4.85824 4.89004 4.96845 5.03362 5.12034 5.16250 5.19584 5.28630 5.36485 5.39120 5.43689 5.52204 5.65229 5.79257 6.09092 6.39225 6.50193 7.08383 7.15260 7.87428 8.39083 9.19267 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.028725 B = 0.003604 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.535384 B = 7767.266943 C = 8001.148286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.402 6.402 3 C 0.082 3.918 4 H 0.122 0.878 5 C -0.172 4.172 6 C 0.513 3.487 7 O -0.587 6.587 8 N -0.610 5.610 9 C 0.090 3.910 10 C -0.113 4.113 11 C -0.053 4.053 12 C 0.123 3.877 13 C -0.104 4.104 14 C 0.136 3.864 15 N -0.608 5.608 16 C -0.262 4.262 17 H 0.069 0.931 18 C -0.054 4.054 19 N -0.938 5.938 20 Si 0.969 3.031 21 H -0.274 1.274 22 H -0.297 1.297 23 H -0.277 1.277 24 C 0.176 3.824 25 C -0.110 4.110 26 H 0.055 0.945 27 H 0.093 0.907 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.045 0.955 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.033 0.967 37 H 0.052 0.948 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.000 1.000 42 H 0.248 0.752 43 H 0.051 0.949 44 H -0.017 1.017 45 H 0.068 0.932 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.549 6.891 2.090 24.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.021 3.979 4 H 0.139 0.861 5 C -0.229 4.229 6 C 0.302 3.698 7 O -0.467 6.467 8 N -0.345 5.345 9 C -0.031 4.031 10 C -0.151 4.151 11 C -0.054 4.054 12 C 0.001 3.999 13 C -0.143 4.143 14 C 0.010 3.990 15 N -0.332 5.332 16 C -0.392 4.392 17 H 0.086 0.914 18 C -0.249 4.249 19 N -0.584 5.584 20 Si 0.797 3.203 21 H -0.199 1.199 22 H -0.223 1.223 23 H -0.203 1.203 24 C 0.051 3.949 25 C -0.149 4.149 26 H 0.074 0.926 27 H 0.112 0.888 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.064 0.936 32 H 0.132 0.868 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.126 0.874 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.018 0.982 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.001 0.999 45 H 0.086 0.914 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.179 6.027 1.962 24.031 hybrid contribution 1.531 -0.414 0.073 1.587 sum -21.649 5.613 2.035 22.457 Atomic orbital electron populations 1.23108 0.78358 1.04191 1.01670 1.88018 1.22258 1.26585 1.95187 1.21961 0.91205 0.86955 0.97795 0.86052 1.22376 1.04499 1.02832 0.93222 1.21040 0.87150 0.82005 0.79615 1.90696 1.73160 1.32043 1.50817 1.48634 1.19930 1.09617 1.56272 1.22881 1.01791 0.79567 0.98815 1.22892 0.92727 0.98207 1.01271 1.20895 0.95942 0.92169 0.96390 1.21882 0.83752 0.97980 0.96334 1.21774 0.96240 1.00473 0.95851 1.21119 0.92135 0.95933 0.89768 1.44314 1.09387 1.77576 1.01887 1.19522 0.85957 1.21711 1.12052 0.91352 1.25841 1.00974 0.97228 1.00836 1.70217 1.36302 1.25646 1.26282 0.85321 0.79371 0.78450 0.77182 1.19931 1.22337 1.20254 1.20608 0.93027 0.93369 0.87914 1.21859 0.95551 1.00731 0.96750 0.92619 0.88810 0.91472 0.88489 0.88458 0.93608 0.86797 0.89642 0.88881 0.87373 0.94901 0.92982 0.90149 0.90737 0.92788 0.98234 0.94266 0.93022 0.99899 0.91369 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.82 113.37 1.23 1.54 16 2 O -0.40 -10.23 9.88 -129.94 -1.28 -11.52 16 3 C 0.08 1.71 2.49 29.85 0.07 1.79 16 4 H 0.12 1.59 7.49 -2.39 -0.02 1.57 16 5 C -0.17 -2.69 9.34 71.98 0.67 -2.01 16 6 C 0.51 16.24 7.29 87.66 0.64 16.88 16 7 O -0.59 -25.83 16.83 16.00 0.27 -25.56 16 8 N -0.61 -16.86 3.33 -812.25 -2.70 -19.56 16 9 C 0.09 1.49 4.82 86.88 0.42 1.91 16 10 C -0.11 -2.00 5.99 31.80 0.19 -1.81 16 11 C -0.05 -1.54 0.53 -51.91 -0.03 -1.57 16 12 C 0.12 4.23 5.06 86.49 0.44 4.67 16 13 C -0.10 -3.20 4.70 30.46 0.14 -3.05 16 14 C 0.14 5.70 6.24 86.40 0.54 6.24 16 15 N -0.61 -30.92 2.98 -698.63 -2.08 -33.00 16 16 C -0.26 -14.59 9.58 84.03 0.80 -13.78 16 17 H 0.07 3.67 7.89 -2.92 -0.02 3.65 16 18 C -0.05 -3.06 4.90 84.86 0.42 -2.64 16 19 N -0.94 -57.33 11.19 21.65 0.24 -57.09 16 20 Si 0.97 45.39 29.59 68.60 2.03 47.42 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 24 C 0.18 8.64 5.03 86.40 0.43 9.07 16 25 C -0.11 -3.83 4.78 30.46 0.15 -3.68 16 26 H 0.06 0.63 8.08 -2.39 -0.02 0.61 16 27 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 0.61 7.87 -2.38 -0.02 0.59 16 29 H 0.10 1.14 4.99 -2.39 -0.01 1.13 16 30 H 0.10 0.97 7.87 -2.39 -0.02 0.95 16 31 H 0.04 0.96 8.14 -2.39 -0.02 0.95 16 32 H 0.11 1.00 7.37 -2.39 -0.02 0.98 16 33 H 0.09 1.27 6.68 -2.39 -0.02 1.25 16 34 H 0.09 1.37 8.01 -2.39 -0.02 1.35 16 35 H 0.11 1.51 8.01 -2.39 -0.02 1.49 16 36 H 0.03 1.43 6.07 -2.39 -0.01 1.41 16 37 H 0.05 1.90 7.59 -2.39 -0.02 1.88 16 38 H 0.08 2.05 8.10 -2.39 -0.02 2.03 16 39 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.05 2.21 7.93 -2.38 -0.02 2.19 16 41 H 0.00 -0.01 7.47 -2.39 -0.02 -0.03 16 42 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 43 H 0.05 2.88 6.02 -2.39 -0.01 2.86 16 44 H -0.02 -0.93 6.53 -2.39 -0.02 -0.95 16 45 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.06 2.03 7.49 -2.39 -0.02 2.01 16 Total: -1.00 -80.53 349.05 3.54 -76.99 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 0.95 Total: 8.76 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 6.12 Total: 13.55 kcal Atomic # 7 Polarization: -105.10 SS G_CDS: -4.54 Total: -109.65 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -1.01 Total: -37.08 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -80.53 3.54 -76.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040625817.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.048 kcal (2) G-P(sol) polarization free energy of solvation -80.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds