Wall clock time and date at job start Tue Mar 31 2020 03:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42906 * 113.99964 * 2 1 4 4 H 1.09000 * 109.47207 * 29.99979 * 3 2 1 5 5 C 1.52999 * 109.46703 * 269.99997 * 3 2 1 6 6 C 1.53010 * 109.46682 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.46869 * 60.00065 * 6 5 3 8 8 C 1.52995 * 109.47200 * 299.99762 * 7 6 5 9 9 C 1.53001 * 109.46815 * 150.00082 * 3 2 1 10 10 H 1.08995 * 109.47116 * 60.00410 * 9 3 2 11 11 C 1.50693 * 109.47228 * 299.99725 * 9 3 2 12 12 O 1.21288 * 120.00102 * 342.93674 * 11 9 3 13 13 N 1.34780 * 120.00376 * 162.92992 * 11 9 3 14 14 C 1.46491 * 120.00536 * 183.86152 * 13 11 9 15 15 C 1.46505 * 119.99329 * 3.86069 * 13 11 9 16 16 C 1.53498 * 114.20485 * 245.49089 * 15 13 11 17 17 N 1.47068 * 87.98620 * 220.34576 * 16 15 13 18 18 C 1.36932 * 136.05793 * 207.08422 * 17 16 15 19 19 H 1.08001 * 119.99814 * 0.02562 * 18 17 16 20 20 C 1.38817 * 120.00076 * 180.02562 * 18 17 16 21 21 N 1.31614 * 119.99579 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00133 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47156 * 59.99795 * 22 20 18 24 24 H 1.48494 * 109.47210 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46925 * 300.00073 * 22 20 18 26 26 C 1.47069 * 87.88190 * 27.12403 * 17 16 15 27 27 H 1.09003 * 109.47547 * 59.99619 * 1 2 3 28 28 H 1.08996 * 109.47336 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46911 * 299.99980 * 1 2 3 30 30 H 1.08995 * 109.47738 * 299.99902 * 5 3 2 31 31 H 1.08994 * 109.47172 * 60.00561 * 5 3 2 32 32 H 1.08994 * 109.47011 * 180.02562 * 6 5 3 33 33 H 1.09000 * 109.47174 * 299.99949 * 6 5 3 34 34 H 1.08995 * 109.47116 * 60.00417 * 7 6 5 35 35 H 1.09001 * 109.46884 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.47157 * 300.00307 * 8 7 6 37 37 H 1.09001 * 109.47066 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.47187 * 266.00381 * 14 13 11 39 39 H 1.09001 * 109.47380 * 26.00114 * 14 13 11 40 40 H 1.08996 * 109.47447 * 146.00325 * 14 13 11 41 41 H 1.09006 * 113.41610 * 18.69205 * 15 13 11 42 42 H 1.09006 * 113.46497 * 105.56441 * 16 15 13 43 43 H 1.08993 * 113.47014 * 335.13469 * 16 15 13 44 44 H 0.97004 * 120.00010 * 179.97438 * 21 20 18 45 45 H 1.08992 * 113.47083 * 87.65944 * 26 17 16 46 46 H 1.09000 * 113.46570 * 218.09961 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 2.8406 3.1689 -1.4425 7 6 4.1893 3.1260 -0.7215 8 6 3.9819 2.6601 0.7210 9 6 3.3589 1.2632 0.7212 10 1 4.0242 0.5694 0.2074 11 6 3.1546 0.8044 2.1420 12 8 2.0470 0.8336 2.6354 13 7 4.2026 0.3613 2.8645 14 6 3.9913 -0.1637 4.2156 15 6 5.5532 0.4049 2.2984 16 6 6.1824 -0.9755 2.0645 17 7 7.4542 -0.4210 2.5521 18 6 8.7838 -0.6834 2.3563 19 1 9.0849 -1.4808 1.6931 20 6 9.7448 0.0756 3.0103 21 7 9.3778 1.0470 3.8189 22 14 11.5586 -0.2820 2.7427 23 1 11.8887 -0.1167 1.3043 24 1 12.3734 0.6614 3.5496 25 1 11.8555 -1.6753 3.1618 26 6 6.6695 0.5388 3.3434 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 2.8829 1.0775 -1.9564 31 1 1.2569 1.8014 -1.9563 32 1 2.9879 3.5010 -2.4701 33 1 2.1757 3.8630 -0.9286 34 1 4.8542 2.4319 -1.2355 35 1 4.6333 4.1215 -0.7218 36 1 3.3170 3.3543 1.2350 37 1 4.9427 2.6300 1.2348 38 1 4.1407 0.6342 4.9430 39 1 2.9749 -0.5479 4.3013 40 1 4.7012 -0.9682 4.4080 41 1 5.6471 1.0878 1.4540 42 1 6.2103 -1.2675 1.0146 43 1 5.7729 -1.7539 2.7082 44 1 10.0492 1.5771 4.2762 45 1 6.3899 0.1638 4.3278 46 1 7.1117 1.5344 3.3810 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044356346.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:26 Heat of formation + Delta-G solvation = -28.615970 kcal Electronic energy + Delta-G solvation = -25674.427760 eV Core-core repulsion = 22179.982050 eV Total energy + Delta-G solvation = -3494.445710 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.47918 -38.72773 -37.56312 -36.34856 -34.11420 -31.94304 -31.40959 -30.02440 -27.71718 -26.97931 -26.26606 -24.64886 -23.72834 -22.83405 -22.27755 -20.22759 -19.81270 -18.52194 -17.18850 -16.66938 -16.55105 -15.86677 -15.26030 -15.12595 -14.83524 -14.75210 -14.35888 -13.97035 -13.81484 -13.69098 -13.29630 -12.99465 -12.66551 -12.45253 -12.06126 -12.01829 -11.74680 -11.68594 -11.58617 -11.40179 -11.27980 -10.97813 -10.97099 -10.88914 -10.77256 -10.60082 -10.36743 -10.25690 -10.13934 -9.51837 -9.49606 -9.24834 -8.87347 -8.07346 -6.97573 -5.84579 -3.17885 2.95980 3.32977 3.36894 3.41405 3.42510 3.75571 4.37928 4.53411 4.59999 4.87135 4.98089 5.10985 5.14974 5.21940 5.24647 5.32093 5.32929 5.33929 5.38270 5.47722 5.48854 5.63779 5.69648 5.71294 5.76202 5.85412 5.90996 5.93772 5.99130 6.00207 6.06825 6.07085 6.16411 6.23433 6.31436 6.41107 6.51216 6.88328 7.08830 7.15367 7.26590 7.43304 7.84359 7.88736 8.53826 8.95676 9.62197 10.53243 11.32872 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.020241 B = 0.004164 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.020151 B = 6722.353271 C = 7386.077209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.378 6.378 3 C 0.111 3.889 4 H 0.068 0.932 5 C -0.141 4.141 6 C -0.117 4.117 7 C -0.120 4.120 8 C -0.113 4.113 9 C -0.103 4.103 10 H 0.102 0.898 11 C 0.526 3.474 12 O -0.552 6.552 13 N -0.596 5.596 14 C 0.088 3.912 15 C 0.070 3.930 16 C 0.106 3.894 17 N -0.603 5.603 18 C -0.220 4.220 19 H 0.083 0.917 20 C -0.005 4.005 21 N -0.919 5.919 22 Si 0.915 3.085 23 H -0.283 1.283 24 H -0.289 1.289 25 H -0.284 1.284 26 C 0.151 3.849 27 H 0.034 0.966 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.118 0.882 42 H 0.043 0.957 43 H 0.036 0.964 44 H 0.255 0.745 45 H 0.033 0.967 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.834 3.350 -8.363 17.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.297 6.297 3 C 0.053 3.947 4 H 0.086 0.914 5 C -0.178 4.178 6 C -0.155 4.155 7 C -0.157 4.157 8 C -0.151 4.151 9 C -0.125 4.125 10 H 0.120 0.880 11 C 0.314 3.686 12 O -0.430 6.430 13 N -0.328 5.328 14 C -0.055 4.055 15 C -0.034 4.034 16 C -0.022 4.022 17 N -0.330 5.330 18 C -0.347 4.347 19 H 0.101 0.899 20 C -0.202 4.202 21 N -0.566 5.566 22 Si 0.745 3.255 23 H -0.209 1.209 24 H -0.215 1.215 25 H -0.211 1.211 26 C 0.024 3.976 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.135 0.865 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.912 3.237 -8.030 17.243 hybrid contribution 0.919 -0.165 0.060 0.936 sum -13.993 3.072 -7.970 16.394 Atomic orbital electron populations 1.22685 0.81346 1.02246 0.99617 1.87887 1.19504 1.27372 1.94912 1.21828 0.93374 0.85203 0.94296 0.91418 1.22056 1.01402 0.97387 0.96999 1.21517 0.96910 0.96383 1.00685 1.21562 0.97223 1.01935 0.95026 1.21603 1.01759 0.93783 0.97963 1.21403 0.98094 0.99384 0.93575 0.88011 1.20361 0.83952 0.76807 0.87445 1.90607 1.24422 1.55524 1.72475 1.47865 1.07419 1.61590 1.15892 1.21569 1.02079 0.99055 0.82796 1.23965 0.79607 0.99750 1.00069 1.22837 0.87147 0.94276 0.97948 1.45288 0.99413 1.36997 1.51266 1.18864 0.78568 1.14286 1.22964 0.89936 1.24803 0.98108 0.98268 0.99000 1.69806 1.32508 1.22196 1.32054 0.86162 0.84315 0.77453 0.77606 1.20941 1.21494 1.21104 1.22430 0.86112 0.96929 0.92122 0.94733 0.90163 0.93697 0.90894 0.91769 0.91578 0.91935 0.91207 0.91206 0.91271 0.89759 0.92864 0.91121 0.91049 0.86492 0.93826 0.94651 0.93456 0.94920 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.82 101.05 1.09 1.52 16 2 O -0.38 -5.47 9.68 -44.17 -0.43 -5.90 16 3 C 0.11 1.44 1.58 -26.73 -0.04 1.40 16 4 H 0.07 0.91 7.57 -51.93 -0.39 0.51 16 5 C -0.14 -1.45 5.54 -26.73 -0.15 -1.60 16 6 C -0.12 -1.07 5.92 -26.73 -0.16 -1.22 16 7 C -0.12 -1.22 5.92 -26.73 -0.16 -1.37 16 8 C -0.11 -1.39 4.86 -26.76 -0.13 -1.52 16 9 C -0.10 -1.44 1.42 -91.80 -0.13 -1.57 16 10 H 0.10 1.45 7.39 -51.93 -0.38 1.07 16 11 C 0.53 8.86 6.60 -10.99 -0.07 8.79 16 12 O -0.55 -10.50 15.27 -3.39 -0.05 -10.56 16 13 N -0.60 -10.12 3.11 -173.71 -0.54 -10.66 16 14 C 0.09 1.40 9.11 59.84 0.54 1.94 16 15 C 0.07 1.28 3.80 -67.81 -0.26 1.03 16 16 C 0.11 2.13 8.28 -8.51 -0.07 2.06 16 17 N -0.60 -14.96 3.78 -184.79 -0.70 -15.65 16 18 C -0.22 -5.98 10.75 -15.06 -0.16 -6.14 16 19 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 20 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 21 N -0.92 -26.42 11.51 55.49 0.64 -25.78 16 22 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.15 3.38 6.77 -8.51 -0.06 3.32 16 27 H 0.03 0.32 7.87 -51.93 -0.41 -0.09 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.53 8.09 -51.92 -0.42 0.11 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.59 7.87 -51.93 -0.41 0.19 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.13 5.97 -51.93 -0.31 0.82 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 1.10 7.36 -51.93 -0.38 0.72 16 40 H 0.07 1.14 6.40 -51.93 -0.33 0.80 16 41 H 0.12 2.01 4.67 -51.93 -0.24 1.77 16 42 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.04 0.71 7.30 -51.93 -0.38 0.33 16 44 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.03 0.75 6.38 -51.93 -0.33 0.42 16 46 H 0.08 1.89 7.12 -51.93 -0.37 1.52 16 LS Contribution 354.51 15.07 5.34 5.34 Total: -1.00 -31.36 354.51 -8.32 -39.68 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -7.71 Total: 0.61 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 0.15 Total: 6.41 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.60 Total: -52.09 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.48 Total: -16.45 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.36 -8.32 -39.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044356346.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.064 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds