Wall clock time and date at job start Tue Mar 31 2020 03:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42906 * 113.99964 * 2 1 4 4 H 1.09000 * 109.47207 * 29.99979 * 3 2 1 5 5 C 1.52999 * 109.46703 * 269.99997 * 3 2 1 6 6 C 1.53010 * 109.46682 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.46869 * 60.00065 * 6 5 3 8 8 C 1.52995 * 109.47200 * 299.99762 * 7 6 5 9 9 C 1.53001 * 109.46815 * 150.00082 * 3 2 1 10 10 H 1.08995 * 109.47116 * 60.00410 * 9 3 2 11 11 C 1.50693 * 109.47228 * 299.99725 * 9 3 2 12 12 O 1.21288 * 120.00102 * 342.93674 * 11 9 3 13 13 N 1.34780 * 120.00376 * 162.92992 * 11 9 3 14 14 C 1.46491 * 120.00536 * 183.86152 * 13 11 9 15 15 C 1.46505 * 119.99329 * 3.86069 * 13 11 9 16 16 C 1.53498 * 114.20485 * 245.49089 * 15 13 11 17 17 N 1.47068 * 87.98620 * 220.34576 * 16 15 13 18 18 C 1.36932 * 136.05793 * 207.08422 * 17 16 15 19 19 H 1.08001 * 119.99814 * 0.02562 * 18 17 16 20 20 C 1.38817 * 120.00076 * 180.02562 * 18 17 16 21 21 N 1.31614 * 119.99579 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00133 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47156 * 59.99795 * 22 20 18 24 24 H 1.48494 * 109.47210 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46925 * 300.00073 * 22 20 18 26 26 C 1.47069 * 87.88190 * 27.12403 * 17 16 15 27 27 H 1.09003 * 109.47547 * 59.99619 * 1 2 3 28 28 H 1.08996 * 109.47336 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46911 * 299.99980 * 1 2 3 30 30 H 1.08995 * 109.47738 * 299.99902 * 5 3 2 31 31 H 1.08994 * 109.47172 * 60.00561 * 5 3 2 32 32 H 1.08994 * 109.47011 * 180.02562 * 6 5 3 33 33 H 1.09000 * 109.47174 * 299.99949 * 6 5 3 34 34 H 1.08995 * 109.47116 * 60.00417 * 7 6 5 35 35 H 1.09001 * 109.46884 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.47157 * 300.00307 * 8 7 6 37 37 H 1.09001 * 109.47066 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.47187 * 266.00381 * 14 13 11 39 39 H 1.09001 * 109.47380 * 26.00114 * 14 13 11 40 40 H 1.08996 * 109.47447 * 146.00325 * 14 13 11 41 41 H 1.09006 * 113.41610 * 18.69205 * 15 13 11 42 42 H 1.09006 * 113.46497 * 105.56441 * 16 15 13 43 43 H 1.08993 * 113.47014 * 335.13469 * 16 15 13 44 44 H 0.97004 * 120.00010 * 179.97438 * 21 20 18 45 45 H 1.08992 * 113.47083 * 87.65944 * 26 17 16 46 46 H 1.09000 * 113.46570 * 218.09961 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 2.8406 3.1689 -1.4425 7 6 4.1893 3.1260 -0.7215 8 6 3.9819 2.6601 0.7210 9 6 3.3589 1.2632 0.7212 10 1 4.0242 0.5694 0.2074 11 6 3.1546 0.8044 2.1420 12 8 2.0470 0.8336 2.6354 13 7 4.2026 0.3613 2.8645 14 6 3.9913 -0.1637 4.2156 15 6 5.5532 0.4049 2.2984 16 6 6.1824 -0.9755 2.0645 17 7 7.4542 -0.4210 2.5521 18 6 8.7838 -0.6834 2.3563 19 1 9.0849 -1.4808 1.6931 20 6 9.7448 0.0756 3.0103 21 7 9.3778 1.0470 3.8189 22 14 11.5586 -0.2820 2.7427 23 1 11.8887 -0.1167 1.3043 24 1 12.3734 0.6614 3.5496 25 1 11.8555 -1.6753 3.1618 26 6 6.6695 0.5388 3.3434 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 2.8829 1.0775 -1.9564 31 1 1.2569 1.8014 -1.9563 32 1 2.9879 3.5010 -2.4701 33 1 2.1757 3.8630 -0.9286 34 1 4.8542 2.4319 -1.2355 35 1 4.6333 4.1215 -0.7218 36 1 3.3170 3.3543 1.2350 37 1 4.9427 2.6300 1.2348 38 1 4.1407 0.6342 4.9430 39 1 2.9749 -0.5479 4.3013 40 1 4.7012 -0.9682 4.4080 41 1 5.6471 1.0878 1.4540 42 1 6.2103 -1.2675 1.0146 43 1 5.7729 -1.7539 2.7082 44 1 10.0492 1.5771 4.2762 45 1 6.3899 0.1638 4.3278 46 1 7.1117 1.5344 3.3810 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044356346.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:25 Heat of formation + Delta-G solvation = -47.482707 kcal Electronic energy + Delta-G solvation = -25675.245883 eV Core-core repulsion = 22179.982050 eV Total energy + Delta-G solvation = -3495.263833 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.76964 -40.09265 -38.95899 -37.30003 -35.70393 -33.89965 -32.40084 -30.92845 -29.57890 -28.27652 -27.23655 -26.38925 -25.35463 -24.04537 -23.21692 -21.64154 -20.95519 -19.90270 -18.84649 -18.21002 -17.67081 -17.17980 -16.80429 -16.40415 -16.24025 -15.89636 -15.70779 -15.46479 -14.97354 -14.64471 -14.47913 -14.30246 -13.97358 -13.74435 -13.52111 -13.39852 -13.13450 -13.04427 -12.89749 -12.81157 -12.61569 -12.60282 -12.27081 -12.11811 -11.97980 -11.92349 -11.76771 -11.47554 -11.36499 -11.26867 -10.88550 -10.70324 -10.33496 -9.56572 -8.95719 -7.91731 -5.26292 1.49000 1.51785 1.57967 1.60755 1.97467 2.49814 2.80419 3.28582 3.31210 3.56572 3.65595 3.71942 3.98242 4.02499 4.16627 4.22275 4.24311 4.27953 4.38459 4.40962 4.45659 4.48643 4.54220 4.60678 4.62695 4.75697 4.82399 4.84253 4.86156 4.87702 4.92784 5.04614 5.13835 5.18371 5.20186 5.25018 5.29475 5.39579 5.45871 5.49680 5.56032 5.88252 6.31495 6.42965 6.88788 7.16465 7.57866 8.55469 9.25490 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.020241 B = 0.004164 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.020151 B = 6722.353271 C = 7386.077209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.404 6.404 3 C 0.111 3.889 4 H 0.060 0.940 5 C -0.134 4.134 6 C -0.113 4.113 7 C -0.117 4.117 8 C -0.110 4.110 9 C -0.101 4.101 10 H 0.100 0.900 11 C 0.524 3.476 12 O -0.573 6.573 13 N -0.599 5.599 14 C 0.087 3.913 15 C 0.106 3.894 16 C 0.107 3.893 17 N -0.631 5.631 18 C -0.232 4.232 19 H 0.088 0.912 20 C -0.060 4.060 21 N -0.950 5.950 22 Si 0.980 3.020 23 H -0.273 1.273 24 H -0.295 1.295 25 H -0.279 1.279 26 C 0.150 3.850 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.033 0.967 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.131 0.869 42 H 0.058 0.942 43 H 0.041 0.959 44 H 0.250 0.750 45 H 0.027 0.973 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.341 3.441 -10.276 18.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.324 6.324 3 C 0.053 3.947 4 H 0.078 0.922 5 C -0.172 4.172 6 C -0.150 4.150 7 C -0.155 4.155 8 C -0.147 4.147 9 C -0.122 4.122 10 H 0.118 0.882 11 C 0.313 3.687 12 O -0.453 6.453 13 N -0.330 5.330 14 C -0.055 4.055 15 C 0.001 3.999 16 C -0.020 4.020 17 N -0.357 5.357 18 C -0.359 4.359 19 H 0.106 0.894 20 C -0.254 4.254 21 N -0.598 5.598 22 Si 0.808 3.192 23 H -0.198 1.198 24 H -0.221 1.221 25 H -0.205 1.205 26 C 0.024 3.976 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.149 0.851 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.045 0.955 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.453 3.310 -9.961 18.681 hybrid contribution 0.982 -0.236 0.700 1.229 sum -14.471 3.074 -9.261 17.453 Atomic orbital electron populations 1.22813 0.79995 1.03180 1.00167 1.87841 1.21104 1.28281 1.95139 1.21896 0.92311 0.84678 0.95812 0.92183 1.22015 1.02276 0.97909 0.94968 1.21512 0.96060 0.95724 1.01741 1.21567 0.98121 1.02433 0.93363 1.21580 1.00714 0.92829 0.99610 1.21479 0.99183 1.00123 0.91453 0.88156 1.20915 0.83316 0.75979 0.88464 1.90594 1.25148 1.56323 1.73251 1.47884 1.06983 1.61768 1.16351 1.21593 1.02218 0.99143 0.82540 1.23494 0.79170 0.98711 0.98529 1.22937 0.85242 0.95163 0.98619 1.45562 0.99977 1.38198 1.51998 1.19258 0.80034 1.14039 1.22594 0.89409 1.25614 1.02165 0.98378 0.99193 1.69990 1.33338 1.23274 1.33245 0.85133 0.79250 0.77088 0.77735 1.19838 1.22094 1.20544 1.22356 0.87365 0.94992 0.92904 0.92433 0.89145 0.94832 0.91100 0.90345 0.89621 0.91382 0.91286 0.90030 0.91212 0.91199 0.92547 0.90735 0.91176 0.85140 0.92342 0.94159 0.94116 0.95547 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.82 113.37 1.23 1.96 16 2 O -0.40 -11.17 9.68 -140.43 -1.36 -12.53 16 3 C 0.11 2.71 1.58 30.59 0.05 2.75 16 4 H 0.06 1.54 7.57 -2.39 -0.02 1.52 16 5 C -0.13 -2.41 5.54 30.60 0.17 -2.24 16 6 C -0.11 -1.71 5.92 30.60 0.18 -1.53 16 7 C -0.12 -2.11 5.92 30.59 0.18 -1.93 16 8 C -0.11 -2.54 4.86 30.58 0.15 -2.39 16 9 C -0.10 -2.70 1.42 -11.56 -0.02 -2.72 16 10 H 0.10 2.72 7.39 -2.39 -0.02 2.70 16 11 C 0.52 17.32 6.60 87.65 0.58 17.89 16 12 O -0.57 -21.60 15.27 5.49 0.08 -21.52 16 13 N -0.60 -20.07 3.11 -821.89 -2.55 -22.62 16 14 C 0.09 2.78 9.11 127.77 1.16 3.94 16 15 C 0.11 3.81 3.80 45.46 0.17 3.98 16 16 C 0.11 4.22 8.28 83.18 0.69 4.91 16 17 N -0.63 -31.32 3.78 -738.55 -2.79 -34.11 16 18 C -0.23 -12.58 10.75 84.04 0.90 -11.67 16 19 H 0.09 4.54 7.83 -2.91 -0.02 4.51 16 20 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 21 N -0.95 -55.62 11.51 21.65 0.25 -55.38 16 22 Si 0.98 44.27 29.55 68.60 2.03 46.30 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 25 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 26 C 0.15 6.86 6.77 83.18 0.56 7.42 16 27 H 0.06 0.94 7.87 -2.39 -0.02 0.92 16 28 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.03 0.77 8.09 -2.38 -0.02 0.75 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.20 7.87 -2.39 -0.02 1.19 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.82 5.97 -2.39 -0.01 1.80 16 38 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.07 2.31 7.36 -2.39 -0.02 2.29 16 40 H 0.07 2.23 6.40 -2.39 -0.02 2.21 16 41 H 0.13 4.39 4.67 -2.38 -0.01 4.38 16 42 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 43 H 0.04 1.58 7.30 -2.39 -0.02 1.56 16 44 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 45 H 0.03 1.24 6.38 -2.39 -0.02 1.22 16 46 H 0.05 2.39 7.12 -2.39 -0.02 2.37 16 Total: -1.00 -66.90 354.51 3.08 -63.82 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.95 Total: 18.49 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: 6.48 Total: 17.54 kcal Atomic # 7 Polarization: -107.01 SS G_CDS: -5.10 Total: -112.10 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -1.28 Total: -34.05 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -66.90 3.08 -63.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044356346.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.340 kcal (2) G-P(sol) polarization free energy of solvation -66.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds