Wall clock time and date at job start Tue Mar 31 2020 03:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99642 * 2 1 4 4 H 1.09000 * 109.47002 * 329.99631 * 3 2 1 5 5 C 1.52991 * 109.47335 * 90.00027 * 3 2 1 6 6 C 1.53003 * 109.46947 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47361 * 299.99856 * 6 5 3 8 8 C 1.52998 * 109.47069 * 59.99914 * 7 6 5 9 9 C 1.52998 * 109.47406 * 300.00352 * 8 7 6 10 10 H 1.09000 * 109.46807 * 300.00015 * 9 8 7 11 11 C 1.50701 * 109.47319 * 179.97438 * 9 8 7 12 12 O 1.21281 * 120.00334 * 250.25877 * 11 9 8 13 13 N 1.34773 * 119.99598 * 70.26278 * 11 9 8 14 14 C 1.46503 * 119.99813 * 184.14798 * 13 11 9 15 15 C 1.46495 * 120.00363 * 4.14544 * 13 11 9 16 16 C 1.53953 * 113.74518 * 213.06098 * 15 13 11 17 17 N 1.47817 * 86.03578 * 222.08534 * 16 15 13 18 18 C 1.36934 * 134.45263 * 204.64219 * 17 16 15 19 19 H 1.07993 * 120.00022 * 179.86506 * 18 17 16 20 20 C 1.38812 * 120.00228 * 359.86906 * 18 17 16 21 21 N 1.31625 * 119.99909 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00214 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46800 * 60.00341 * 22 20 18 24 24 H 1.48495 * 109.46976 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47156 * 299.99866 * 22 20 18 26 26 C 1.47576 * 91.05314 * 24.54749 * 17 16 15 27 27 H 1.09000 * 109.47358 * 60.00551 * 1 2 3 28 28 H 1.09004 * 109.47085 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47048 * 299.99790 * 1 2 3 30 30 H 1.09000 * 109.47399 * 59.99847 * 5 3 2 31 31 H 1.08995 * 109.47603 * 299.99694 * 5 3 2 32 32 H 1.09009 * 109.46994 * 179.97438 * 6 5 3 33 33 H 1.08997 * 109.47186 * 60.00558 * 6 5 3 34 34 H 1.09004 * 109.47210 * 300.00451 * 7 6 5 35 35 H 1.08999 * 109.47274 * 180.02562 * 7 6 5 36 36 H 1.08998 * 109.47065 * 179.97438 * 8 7 6 37 37 H 1.09004 * 109.46666 * 60.00204 * 8 7 6 38 38 H 1.08997 * 109.47370 * 95.46763 * 14 13 11 39 39 H 1.09007 * 109.47046 * 215.46324 * 14 13 11 40 40 H 1.08999 * 109.47161 * 335.46149 * 14 13 11 41 41 H 1.08998 * 112.94459 * 344.65630 * 15 13 11 42 42 H 1.08997 * 113.76545 * 336.35067 * 16 15 13 43 43 H 1.09001 * 113.76360 * 107.74631 * 16 15 13 44 44 H 0.96998 * 120.00095 * 180.02562 * 21 20 18 45 45 H 1.09000 * 113.77172 * 221.15027 * 26 17 16 46 46 H 1.09002 * 113.76928 * 89.75411 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 -0.5139 5 6 2.2175 1.7715 1.4424 6 6 2.8404 3.1690 1.4423 7 6 4.1891 3.1263 0.7212 8 6 3.9817 2.6602 -0.7212 9 6 3.3589 1.2628 -0.7212 10 1 4.0238 0.5687 -0.2072 11 6 3.1540 0.8040 -2.1420 12 8 2.0325 0.7163 -2.5952 13 7 4.2172 0.4911 -2.9089 14 6 4.0249 0.1329 -4.3164 15 6 5.5650 0.5093 -2.3352 16 6 6.6582 0.9309 -3.3339 17 7 7.4683 -0.1588 -2.7497 18 6 8.8111 -0.4073 -2.6489 19 1 9.1589 -1.3036 -2.1569 20 6 9.7253 0.4928 -3.1789 21 7 9.3014 1.5854 -3.7780 22 14 11.5572 0.1541 -3.0408 23 1 11.8767 -1.1256 -3.7231 24 1 12.3145 1.2588 -3.6818 25 1 11.9364 0.0594 -1.6081 26 6 6.2495 -0.8695 -2.3169 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 2.8828 1.0776 1.9563 31 1 1.2568 1.8016 1.9563 32 1 2.9877 3.5012 2.4700 33 1 2.1754 3.8631 0.9284 34 1 4.8541 2.4321 1.2352 35 1 4.6330 4.1218 0.7216 36 1 4.9425 2.6302 -1.2350 37 1 3.3167 3.3544 -1.2352 38 1 4.1730 1.0150 -4.9394 39 1 4.7454 -0.6354 -4.5975 40 1 3.0136 -0.2476 -4.4596 41 1 5.6142 1.0363 -1.3824 42 1 6.3875 0.7665 -4.3768 43 1 7.0611 1.9268 -3.1496 44 1 9.9402 2.2142 -4.1488 45 1 6.3267 -1.3085 -1.3222 46 1 5.8585 -1.5640 -3.0605 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044356349.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:36 Heat of formation + Delta-G solvation = -31.894431 kcal Electronic energy + Delta-G solvation = -25696.968579 eV Core-core repulsion = 22202.380704 eV Total energy + Delta-G solvation = -3494.587875 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.46234 -38.62786 -37.46126 -36.33372 -34.06583 -31.88401 -31.40637 -30.00606 -27.66569 -26.93951 -26.23780 -24.85541 -23.65986 -22.79328 -22.25243 -20.20697 -19.79671 -18.45298 -17.15834 -16.69824 -16.54208 -15.83052 -15.28605 -15.09208 -14.81960 -14.72658 -14.35413 -13.95590 -13.78769 -13.67459 -13.26883 -13.00435 -12.63356 -12.42770 -12.09769 -11.96096 -11.71991 -11.60308 -11.56155 -11.44708 -11.25364 -10.96513 -10.93474 -10.86104 -10.74597 -10.58271 -10.36687 -10.30442 -10.11757 -9.60239 -9.49179 -9.21565 -8.84633 -8.08693 -6.96166 -5.83316 -3.16275 2.97316 3.34384 3.37806 3.42003 3.43394 3.77791 4.38984 4.54695 4.60292 4.87554 4.99383 5.11569 5.14145 5.18133 5.24298 5.32659 5.33553 5.35686 5.40117 5.47731 5.50049 5.65142 5.70652 5.73085 5.77992 5.86143 5.91449 5.95186 6.00060 6.01098 6.07419 6.08343 6.18065 6.25384 6.32218 6.42599 6.51424 6.90159 7.11573 7.17487 7.28858 7.44958 7.85625 7.90312 8.55100 8.97788 9.64034 10.50496 11.33774 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.020653 B = 0.004165 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.438137 B = 6720.321675 C = 7388.080081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.377 6.377 3 C 0.112 3.888 4 H 0.066 0.934 5 C -0.141 4.141 6 C -0.117 4.117 7 C -0.120 4.120 8 C -0.114 4.114 9 C -0.104 4.104 10 H 0.102 0.898 11 C 0.524 3.476 12 O -0.550 6.550 13 N -0.599 5.599 14 C 0.087 3.913 15 C 0.076 3.924 16 C 0.158 3.842 17 N -0.606 5.606 18 C -0.224 4.224 19 H 0.081 0.919 20 C -0.005 4.005 21 N -0.921 5.921 22 Si 0.913 3.087 23 H -0.285 1.285 24 H -0.289 1.289 25 H -0.283 1.283 26 C 0.107 3.893 27 H 0.044 0.956 28 H 0.079 0.921 29 H 0.033 0.967 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.114 0.886 42 H 0.034 0.966 43 H 0.077 0.923 44 H 0.255 0.745 45 H 0.047 0.953 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.734 2.585 8.407 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.295 6.295 3 C 0.054 3.946 4 H 0.084 0.916 5 C -0.179 4.179 6 C -0.155 4.155 7 C -0.157 4.157 8 C -0.152 4.152 9 C -0.125 4.125 10 H 0.120 0.880 11 C 0.312 3.688 12 O -0.428 6.428 13 N -0.331 5.331 14 C -0.056 4.056 15 C -0.028 4.028 16 C 0.032 3.968 17 N -0.333 5.333 18 C -0.352 4.352 19 H 0.099 0.901 20 C -0.202 4.202 21 N -0.568 5.568 22 Si 0.743 3.257 23 H -0.212 1.212 24 H -0.215 1.215 25 H -0.210 1.210 26 C -0.020 4.020 27 H 0.063 0.937 28 H 0.098 0.902 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.132 0.868 42 H 0.052 0.948 43 H 0.096 0.904 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -14.851 2.440 8.094 17.089 hybrid contribution 0.966 -0.109 -0.127 0.980 sum -13.885 2.331 7.967 16.177 Atomic orbital electron populations 1.22669 0.81393 1.02200 0.99528 1.87885 1.19461 1.27267 1.94882 1.21807 0.93340 0.85245 0.94229 0.91571 1.22059 1.01385 0.97381 0.97038 1.21518 0.96931 0.96372 1.00680 1.21562 0.97176 1.01954 0.95051 1.21635 1.01908 0.93719 0.97939 1.21423 0.98088 0.99346 0.93634 0.88011 1.20385 0.84248 0.76722 0.87399 1.90605 1.23618 1.54013 1.74613 1.47963 1.07110 1.67074 1.10962 1.21564 1.02310 1.00505 0.81220 1.24242 0.79346 0.99438 0.99803 1.22643 0.85231 0.95378 0.93529 1.45740 0.99722 1.21811 1.66024 1.18948 0.79117 1.05217 1.31898 0.90118 1.24781 0.98078 0.97031 1.00271 1.69795 1.33088 1.11682 1.42186 0.86186 0.84613 0.77161 0.77714 1.21155 1.21522 1.20989 1.22987 0.87199 0.93903 0.97959 0.93708 0.90214 0.94833 0.90923 0.91787 0.91599 0.91950 0.91252 0.91190 0.89566 0.91347 0.92862 0.91194 0.90935 0.86838 0.94792 0.90436 0.93487 0.93451 0.94533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.82 101.05 1.09 1.54 16 2 O -0.38 -5.48 9.51 -49.48 -0.47 -5.95 16 3 C 0.11 1.45 1.57 -26.73 -0.04 1.41 16 4 H 0.07 0.89 7.63 -51.93 -0.40 0.49 16 5 C -0.14 -1.45 5.54 -26.73 -0.15 -1.60 16 6 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 7 C -0.12 -1.23 5.92 -26.73 -0.16 -1.38 16 8 C -0.11 -1.40 4.82 -26.73 -0.13 -1.53 16 9 C -0.10 -1.44 1.41 -91.77 -0.13 -1.57 16 10 H 0.10 1.44 7.36 -51.93 -0.38 1.06 16 11 C 0.52 8.81 6.71 -10.99 -0.07 8.73 16 12 O -0.55 -10.46 14.99 -8.69 -0.13 -10.59 16 13 N -0.60 -10.12 3.09 -175.73 -0.54 -10.66 16 14 C 0.09 1.38 9.04 59.85 0.54 1.92 16 15 C 0.08 1.37 3.49 -70.13 -0.24 1.13 16 16 C 0.16 3.53 6.94 -2.83 -0.02 3.51 16 17 N -0.61 -14.94 3.70 -177.85 -0.66 -15.60 16 18 C -0.22 -6.10 10.70 -15.06 -0.16 -6.26 16 19 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 20 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 21 N -0.92 -26.35 11.39 55.49 0.63 -25.72 16 22 Si 0.91 21.56 29.55 -169.99 -5.02 16.54 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 C 0.11 2.14 8.50 -2.97 -0.03 2.12 16 27 H 0.04 0.54 8.08 -51.93 -0.42 0.12 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.03 0.31 7.87 -51.92 -0.41 -0.10 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.60 7.87 -51.93 -0.41 0.19 16 32 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.17 5.90 -51.93 -0.31 0.86 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 39 H 0.07 1.12 6.65 -51.93 -0.35 0.77 16 40 H 0.07 1.14 7.22 -51.93 -0.37 0.76 16 41 H 0.11 1.93 4.65 -51.93 -0.24 1.69 16 42 H 0.03 0.78 6.62 -51.93 -0.34 0.43 16 43 H 0.08 1.90 7.16 -51.93 -0.37 1.53 16 44 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.04 0.73 7.17 -51.93 -0.37 0.36 16 LS Contribution 354.01 15.07 5.33 5.33 Total: -1.00 -31.25 354.01 -8.33 -39.58 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -7.72 Total: 0.51 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 0.25 Total: 6.55 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.57 Total: -51.98 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.60 Total: -16.54 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.25 -8.33 -39.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044356349.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.684 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds