Wall clock time and date at job start Tue Mar 31 2020 03:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 H 1.08995 * 109.46903 * 30.00207 * 3 2 1 5 5 C 1.52996 * 109.47002 * 269.99932 * 3 2 1 6 6 C 1.50695 * 109.46756 * 149.99884 * 3 2 1 7 7 O 1.21282 * 120.00478 * 5.00123 * 6 3 2 8 8 N 1.34776 * 120.00054 * 184.99870 * 6 3 2 9 9 C 1.46501 * 120.00382 * 179.97438 * 8 6 3 10 10 C 1.53007 * 109.46988 * 180.02562 * 9 8 6 11 11 C 1.53517 * 111.15830 * 299.11342 * 10 9 8 12 12 C 1.54185 * 106.58608 * 240.88147 * 11 10 9 13 13 C 1.54738 * 104.35030 * 335.43399 * 12 11 10 14 14 C 1.54667 * 111.22587 * 180.02562 * 10 9 8 15 15 H 1.09001 * 112.39858 * 19.49468 * 14 10 9 16 16 N 1.47254 * 106.10485 * 256.41039 * 14 10 9 17 17 C 1.36937 * 126.52460 * 150.11007 * 16 14 10 18 18 H 1.08001 * 119.99195 * 0.02562 * 17 16 14 19 19 C 1.38803 * 120.00249 * 179.97438 * 17 16 14 20 20 N 1.31626 * 119.99978 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00079 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47184 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47414 * 119.99943 * 21 19 17 24 24 H 1.48504 * 109.47058 * 239.99687 * 21 19 17 25 25 C 1.47158 * 106.95602 * 330.07184 * 16 14 10 26 26 C 1.53671 * 111.17331 * 62.60811 * 10 9 8 27 27 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 28 28 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 29 29 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47516 * 299.99900 * 5 3 2 31 31 H 1.09001 * 109.47114 * 60.00397 * 5 3 2 32 32 H 1.09004 * 109.46921 * 180.02562 * 5 3 2 33 33 H 0.97010 * 119.99554 * 0.02562 * 8 6 3 34 34 H 1.08996 * 109.46994 * 300.00079 * 9 8 6 35 35 H 1.09002 * 109.46802 * 60.00401 * 9 8 6 36 36 H 1.08998 * 110.03992 * 0.99324 * 11 10 9 37 37 H 1.08999 * 110.03808 * 122.43679 * 11 10 9 38 38 H 1.09000 * 110.79796 * 216.50357 * 12 11 10 39 39 H 1.08999 * 110.10902 * 94.02469 * 12 11 10 40 40 H 1.09005 * 110.64877 * 278.62412 * 13 12 11 41 41 H 1.08998 * 110.65103 * 155.54031 * 13 12 11 42 42 H 0.97002 * 119.99556 * 180.02562 * 20 19 17 43 43 H 1.08997 * 110.08946 * 150.06645 * 25 16 14 44 44 H 1.09001 * 110.09546 * 271.65948 * 25 16 14 45 45 H 1.09006 * 110.22347 * 241.06165 * 26 10 9 46 46 H 1.09002 * 110.23347 * 3.01024 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2178 1.7713 -1.4425 6 6 3.3386 1.2638 0.7104 7 8 3.7897 0.2044 1.0914 8 7 4.0255 2.4038 0.9224 9 6 5.3167 2.3634 1.6136 10 6 5.8807 3.7815 1.7238 11 6 6.1073 4.3971 0.3358 12 6 7.6153 4.7005 0.2298 13 6 8.0798 4.8538 1.6979 14 6 7.2472 3.7858 2.4483 15 1 7.7210 2.8042 2.4472 16 7 6.9853 4.2780 3.8112 17 6 7.6789 3.9468 4.9446 18 1 8.5104 3.2600 4.8873 19 6 7.3139 4.4946 6.1666 20 7 6.3014 5.3328 6.2360 21 14 8.2604 4.0433 7.7125 22 1 9.3456 3.0900 7.3679 23 1 8.8490 5.2697 8.3083 24 1 7.3388 3.4111 8.6904 25 6 5.8371 5.1941 3.7235 26 6 4.9623 4.6802 2.5666 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 2.8830 1.0774 -1.9563 31 1 1.2569 1.8015 -1.9563 32 1 2.6616 2.7669 -1.4425 33 1 3.6646 3.2512 0.6180 34 1 5.1814 1.9480 2.6121 35 1 6.0105 1.7387 1.0510 36 1 5.7997 3.6949 -0.4390 37 1 5.5449 5.3262 0.2430 38 1 7.7863 5.6242 -0.3230 39 1 8.1321 3.8689 -0.2491 40 1 7.8510 5.8521 2.0711 41 1 9.1455 4.6435 1.7878 42 1 6.0466 5.7158 7.0900 43 1 5.2728 5.1775 4.6558 44 1 6.1811 6.2065 3.5114 45 1 4.5998 5.5157 1.9677 46 1 4.1236 4.1028 2.9557 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107305285.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:38 Heat of formation + Delta-G solvation = -62.911500 kcal Electronic energy + Delta-G solvation = -25312.659220 eV Core-core repulsion = 21816.726344 eV Total energy + Delta-G solvation = -3495.932876 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.18682 -39.22261 -37.55467 -34.73269 -33.91718 -32.07127 -31.43916 -30.14340 -27.97097 -27.01987 -26.81652 -24.87147 -23.78952 -23.23266 -20.59733 -20.48470 -19.54196 -18.41730 -17.45783 -17.11563 -16.78007 -15.78503 -15.21014 -15.10920 -14.87773 -14.64223 -14.27090 -13.85251 -13.61358 -13.49343 -13.41243 -12.91831 -12.81912 -12.59971 -12.45341 -12.00871 -11.86839 -11.62245 -11.37621 -11.19782 -10.99005 -10.80381 -10.63570 -10.52684 -10.27449 -10.16414 -10.07112 -10.00537 -9.86450 -9.61815 -9.49339 -9.40403 -8.83595 -8.66308 -6.87029 -5.63459 -3.08413 2.71425 2.90373 3.40143 3.46297 3.48256 3.87100 4.48289 4.56634 4.71424 4.81014 4.96559 5.00678 5.04378 5.09161 5.14027 5.27591 5.43151 5.44479 5.50050 5.56586 5.62967 5.75640 5.81844 5.91543 5.94759 6.06895 6.10275 6.14371 6.19229 6.32054 6.41719 6.45211 6.48666 6.66442 6.69453 6.79631 6.84188 6.89889 7.08210 7.50600 7.62962 7.64073 7.86170 8.34346 8.41883 9.22064 9.83004 10.49550 11.36952 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.017590 B = 0.004071 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.442530 B = 6875.887972 C = 7791.704126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.069 3.931 4 H 0.086 0.914 5 C -0.169 4.169 6 C 0.509 3.491 7 O -0.522 6.522 8 N -0.720 5.720 9 C 0.143 3.857 10 C -0.087 4.087 11 C -0.111 4.111 12 C -0.122 4.122 13 C -0.135 4.135 14 C 0.168 3.832 15 H 0.065 0.935 16 N -0.588 5.588 17 C -0.217 4.217 18 H 0.079 0.921 19 C -0.012 4.012 20 N -0.921 5.921 21 Si 0.914 3.086 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.137 3.863 26 C -0.130 4.130 27 H 0.044 0.956 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.398 0.602 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.251 0.749 43 H 0.121 0.879 44 H 0.006 0.994 45 H 0.053 0.947 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.357 -2.000 -15.913 18.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.007 3.993 4 H 0.103 0.897 5 C -0.227 4.227 6 C 0.294 3.706 7 O -0.397 6.397 8 N -0.373 5.373 9 C 0.020 3.980 10 C -0.089 4.089 11 C -0.149 4.149 12 C -0.161 4.161 13 C -0.176 4.176 14 C 0.059 3.941 15 H 0.083 0.917 16 N -0.309 5.309 17 C -0.346 4.346 18 H 0.096 0.904 19 C -0.207 4.207 20 N -0.570 5.570 21 Si 0.745 3.255 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.011 3.989 26 C -0.169 4.169 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.232 0.768 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.138 0.862 44 H 0.024 0.976 45 H 0.072 0.928 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.895 -2.925 -15.331 17.964 hybrid contribution 0.056 0.593 0.585 0.835 sum -8.839 -2.332 -14.746 17.350 Atomic orbital electron populations 1.22877 0.80789 1.03164 0.99989 1.88058 1.19514 1.25279 1.94926 1.21955 0.93874 0.86765 0.96712 0.89655 1.22217 1.03254 1.02094 0.95117 1.20308 0.86088 0.84361 0.79872 1.90727 1.69169 1.29827 1.49996 1.45996 1.22411 1.08916 1.59960 1.21393 0.82678 0.96714 0.97193 1.22023 0.98283 0.93242 0.95304 1.22210 0.97086 0.99777 0.95798 1.22264 0.95562 1.00276 0.97960 1.23025 0.99537 1.01511 0.93486 1.21669 0.91154 0.95457 0.85832 0.91718 1.44577 1.34515 1.50525 1.01264 1.19160 1.09370 1.21664 0.84378 0.90350 1.24758 0.98783 0.99428 0.97708 1.69644 1.29201 1.34450 1.23706 0.86001 0.78855 0.77509 0.83178 1.20506 1.21823 1.21784 1.21863 0.88413 0.90578 0.98001 1.22716 0.98289 0.97470 0.98430 0.93768 0.93945 0.89227 0.91070 0.91366 0.90847 0.76765 0.90857 0.91878 0.92321 0.92005 0.92573 0.92455 0.91238 0.92654 0.93809 0.86210 0.97650 0.92821 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.33 16 2 O -0.36 -4.67 9.89 -55.09 -0.54 -5.22 16 3 C 0.07 0.76 3.13 -27.89 -0.09 0.67 16 4 H 0.09 0.75 7.79 -51.93 -0.40 0.34 16 5 C -0.17 -1.40 9.48 37.16 0.35 -1.05 16 6 C 0.51 7.61 7.18 -10.99 -0.08 7.53 16 7 O -0.52 -10.39 16.51 -14.31 -0.24 -10.62 16 8 N -0.72 -9.59 4.80 -60.29 -0.29 -9.88 16 9 C 0.14 2.32 4.27 -4.04 -0.02 2.30 16 10 C -0.09 -1.41 0.65 -153.01 -0.10 -1.51 16 11 C -0.11 -1.47 5.62 -25.84 -0.15 -1.61 16 12 C -0.12 -1.70 6.83 -25.20 -0.17 -1.87 16 13 C -0.14 -2.39 6.37 -24.86 -0.16 -2.55 16 14 C 0.17 3.32 3.59 -65.68 -0.24 3.08 16 15 H 0.06 1.30 7.95 -51.93 -0.41 0.89 16 16 N -0.59 -14.38 2.98 -161.97 -0.48 -14.86 16 17 C -0.22 -5.92 10.33 -15.06 -0.16 -6.08 16 18 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 19 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 20 N -0.92 -26.40 10.06 55.49 0.56 -25.84 16 21 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 C 0.14 3.19 5.68 -3.22 -0.02 3.17 16 26 C -0.13 -2.31 5.81 -25.92 -0.15 -2.47 16 27 H 0.04 0.34 8.09 -51.93 -0.42 -0.08 16 28 H 0.04 0.27 7.87 -51.93 -0.41 -0.14 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.45 7.87 -51.93 -0.41 0.04 16 32 H 0.07 0.49 7.92 -51.93 -0.41 0.08 16 33 H 0.40 4.21 7.64 -40.82 -0.31 3.89 16 34 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.69 7.47 -51.93 -0.39 0.30 16 37 H 0.06 0.77 7.10 -51.93 -0.37 0.40 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.37 7.28 -51.93 -0.38 0.99 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.12 3.22 5.46 -51.93 -0.28 2.93 16 44 H 0.01 0.14 7.71 -51.93 -0.40 -0.26 16 45 H 0.05 0.83 7.11 -51.93 -0.37 0.46 16 46 H 0.06 1.00 7.62 -51.93 -0.40 0.60 16 LS Contribution 358.37 15.07 5.40 5.40 Total: -1.00 -32.53 358.37 -8.45 -40.98 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -7.87 Total: 2.48 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 0.03 Total: 0.54 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.21 Total: -50.58 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.78 Total: -15.84 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.53 -8.45 -40.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107305285.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.931 kcal (2) G-P(sol) polarization free energy of solvation -32.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds