Wall clock time and date at job start Tue Mar 31 2020 03:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 H 1.08995 * 109.46903 * 30.00207 * 3 2 1 5 5 C 1.52996 * 109.47002 * 269.99932 * 3 2 1 6 6 C 1.50695 * 109.46756 * 149.99884 * 3 2 1 7 7 O 1.21282 * 120.00478 * 5.00123 * 6 3 2 8 8 N 1.34776 * 120.00054 * 184.99870 * 6 3 2 9 9 C 1.46501 * 120.00382 * 179.97438 * 8 6 3 10 10 C 1.53007 * 109.46988 * 180.02562 * 9 8 6 11 11 C 1.53517 * 111.15830 * 299.11342 * 10 9 8 12 12 C 1.54185 * 106.58608 * 240.88147 * 11 10 9 13 13 C 1.54738 * 104.35030 * 335.43399 * 12 11 10 14 14 C 1.54667 * 111.22587 * 180.02562 * 10 9 8 15 15 H 1.09001 * 112.39858 * 19.49468 * 14 10 9 16 16 N 1.47254 * 106.10485 * 256.41039 * 14 10 9 17 17 C 1.36937 * 126.52460 * 150.11007 * 16 14 10 18 18 H 1.08001 * 119.99195 * 0.02562 * 17 16 14 19 19 C 1.38803 * 120.00249 * 179.97438 * 17 16 14 20 20 N 1.31626 * 119.99978 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00079 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47184 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47414 * 119.99943 * 21 19 17 24 24 H 1.48504 * 109.47058 * 239.99687 * 21 19 17 25 25 C 1.47158 * 106.95602 * 330.07184 * 16 14 10 26 26 C 1.53671 * 111.17331 * 62.60811 * 10 9 8 27 27 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 28 28 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 29 29 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47516 * 299.99900 * 5 3 2 31 31 H 1.09001 * 109.47114 * 60.00397 * 5 3 2 32 32 H 1.09004 * 109.46921 * 180.02562 * 5 3 2 33 33 H 0.97010 * 119.99554 * 0.02562 * 8 6 3 34 34 H 1.08996 * 109.46994 * 300.00079 * 9 8 6 35 35 H 1.09002 * 109.46802 * 60.00401 * 9 8 6 36 36 H 1.08998 * 110.03992 * 0.99324 * 11 10 9 37 37 H 1.08999 * 110.03808 * 122.43679 * 11 10 9 38 38 H 1.09000 * 110.79796 * 216.50357 * 12 11 10 39 39 H 1.08999 * 110.10902 * 94.02469 * 12 11 10 40 40 H 1.09005 * 110.64877 * 278.62412 * 13 12 11 41 41 H 1.08998 * 110.65103 * 155.54031 * 13 12 11 42 42 H 0.97002 * 119.99556 * 180.02562 * 20 19 17 43 43 H 1.08997 * 110.08946 * 150.06645 * 25 16 14 44 44 H 1.09001 * 110.09546 * 271.65948 * 25 16 14 45 45 H 1.09006 * 110.22347 * 241.06165 * 26 10 9 46 46 H 1.09002 * 110.23347 * 3.01024 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2178 1.7713 -1.4425 6 6 3.3386 1.2638 0.7104 7 8 3.7897 0.2044 1.0914 8 7 4.0255 2.4038 0.9224 9 6 5.3167 2.3634 1.6136 10 6 5.8807 3.7815 1.7238 11 6 6.1073 4.3971 0.3358 12 6 7.6153 4.7005 0.2298 13 6 8.0798 4.8538 1.6979 14 6 7.2472 3.7858 2.4483 15 1 7.7210 2.8042 2.4472 16 7 6.9853 4.2780 3.8112 17 6 7.6789 3.9468 4.9446 18 1 8.5104 3.2600 4.8873 19 6 7.3139 4.4946 6.1666 20 7 6.3014 5.3328 6.2360 21 14 8.2604 4.0433 7.7125 22 1 9.3456 3.0900 7.3679 23 1 8.8490 5.2697 8.3083 24 1 7.3388 3.4111 8.6904 25 6 5.8371 5.1941 3.7235 26 6 4.9623 4.6802 2.5666 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 2.8830 1.0774 -1.9563 31 1 1.2569 1.8015 -1.9563 32 1 2.6616 2.7669 -1.4425 33 1 3.6646 3.2512 0.6180 34 1 5.1814 1.9480 2.6121 35 1 6.0105 1.7387 1.0510 36 1 5.7997 3.6949 -0.4390 37 1 5.5449 5.3262 0.2430 38 1 7.7863 5.6242 -0.3230 39 1 8.1321 3.8689 -0.2491 40 1 7.8510 5.8521 2.0711 41 1 9.1455 4.6435 1.7878 42 1 6.0466 5.7158 7.0900 43 1 5.2728 5.1775 4.6558 44 1 6.1811 6.2065 3.5114 45 1 4.5998 5.5157 1.9677 46 1 4.1236 4.1028 2.9557 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107305285.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:37 Heat of formation + Delta-G solvation = -84.299370 kcal Electronic energy + Delta-G solvation = -25313.586668 eV Core-core repulsion = 21816.726344 eV Total energy + Delta-G solvation = -3496.860324 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 2.98 seconds Orbital eigenvalues (eV) -41.46445 -40.49966 -38.52459 -36.30630 -35.39369 -33.38904 -32.82933 -31.63063 -29.41097 -28.44637 -27.67187 -26.05337 -25.56648 -24.32327 -22.12380 -21.77754 -20.94314 -19.77306 -19.02191 -18.36030 -17.87688 -16.94985 -16.78780 -16.30339 -16.12361 -15.89719 -15.54593 -15.28938 -15.13402 -14.89981 -14.37529 -14.14312 -14.07748 -13.59858 -13.56403 -13.34924 -13.26508 -12.86736 -12.82442 -12.73174 -12.49805 -12.14969 -12.09515 -11.97528 -11.82024 -11.60036 -11.56645 -11.42609 -11.33532 -11.04154 -11.02194 -10.70602 -10.49339 -10.09754 -8.85409 -7.72885 -5.19130 1.44735 1.45766 1.55376 1.57574 1.89192 2.49271 3.03822 3.31341 3.53467 3.68548 3.73269 3.77615 3.94770 4.01394 4.08120 4.33712 4.40554 4.47818 4.49414 4.56444 4.56960 4.65058 4.65860 4.73263 4.78081 4.85752 4.87230 4.91879 4.97898 5.08523 5.15368 5.19581 5.23891 5.27785 5.38841 5.46203 5.50518 5.52870 5.61018 5.71182 5.90442 6.08886 6.41387 6.58286 7.14471 7.24032 7.82575 8.48531 9.24976 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.017590 B = 0.004071 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.442530 B = 6875.887972 C = 7791.704126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.399 6.399 3 C 0.071 3.929 4 H 0.114 0.886 5 C -0.163 4.163 6 C 0.504 3.496 7 O -0.581 6.581 8 N -0.702 5.702 9 C 0.154 3.846 10 C -0.072 4.072 11 C -0.102 4.102 12 C -0.112 4.112 13 C -0.131 4.131 14 C 0.153 3.847 15 H 0.054 0.946 16 N -0.610 5.610 17 C -0.228 4.228 18 H 0.076 0.924 19 C -0.067 4.067 20 N -0.946 5.946 21 Si 0.973 3.027 22 H -0.270 1.270 23 H -0.292 1.292 24 H -0.294 1.294 25 C 0.139 3.861 26 C -0.116 4.116 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.054 0.946 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.417 0.583 34 H 0.031 0.969 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.046 0.954 41 H 0.049 0.951 42 H 0.245 0.755 43 H 0.082 0.918 44 H -0.015 1.015 45 H 0.089 0.911 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.500 -1.324 -18.911 21.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.318 6.318 3 C 0.010 3.990 4 H 0.131 0.869 5 C -0.220 4.220 6 C 0.291 3.709 7 O -0.461 6.461 8 N -0.356 5.356 9 C 0.030 3.970 10 C -0.073 4.073 11 C -0.140 4.140 12 C -0.150 4.150 13 C -0.171 4.171 14 C 0.045 3.955 15 H 0.072 0.928 16 N -0.332 5.332 17 C -0.358 4.358 18 H 0.094 0.906 19 C -0.259 4.259 20 N -0.596 5.596 21 Si 0.803 3.197 22 H -0.194 1.194 23 H -0.219 1.219 24 H -0.221 1.221 25 C 0.014 3.986 26 C -0.155 4.155 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.254 0.746 34 H 0.049 0.951 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.100 0.900 44 H 0.003 0.997 45 H 0.108 0.892 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.052 -2.221 -18.388 21.073 hybrid contribution 0.427 0.350 1.541 1.637 sum -9.625 -1.871 -16.847 19.492 Atomic orbital electron populations 1.23090 0.78655 1.04121 1.01494 1.88009 1.21947 1.26633 1.95215 1.22087 0.91675 0.86915 0.98303 0.86855 1.22223 1.04441 1.02618 0.92741 1.21199 0.87275 0.83508 0.78949 1.90701 1.70841 1.32002 1.52512 1.45771 1.21213 1.09682 1.58947 1.21057 0.84181 0.96381 0.95379 1.21860 0.95582 0.93079 0.96827 1.22201 0.97001 1.01089 0.93690 1.22228 0.95801 1.02058 0.94899 1.22863 0.98891 0.99096 0.96256 1.21986 0.93745 0.95437 0.84323 0.92834 1.44805 1.34939 1.50951 1.02497 1.19463 1.09377 1.21117 0.85813 0.90597 1.25503 1.00013 1.00031 1.00335 1.69911 1.30480 1.35533 1.23709 0.85070 0.77791 0.77159 0.79725 1.19447 1.21872 1.22120 1.21640 0.88517 0.89930 0.98562 1.22574 0.97209 0.98713 0.97003 0.93147 0.91427 0.88762 0.92650 0.89054 0.88591 0.74574 0.95068 0.91915 0.89682 0.89876 0.90280 0.91095 0.93524 0.93219 0.94486 0.90002 0.99686 0.89245 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.82 113.37 1.23 1.55 16 2 O -0.40 -9.78 9.89 -129.99 -1.28 -11.06 16 3 C 0.07 1.40 3.13 29.85 0.09 1.49 16 4 H 0.11 1.56 7.79 -2.39 -0.02 1.54 16 5 C -0.16 -2.06 9.48 71.98 0.68 -1.38 16 6 C 0.50 14.44 7.18 87.66 0.63 15.07 16 7 O -0.58 -23.51 16.51 15.96 0.26 -23.25 16 8 N -0.70 -17.18 4.80 -463.05 -2.22 -19.41 16 9 C 0.15 4.89 4.27 86.38 0.37 5.26 16 10 C -0.07 -2.21 0.65 -51.21 -0.03 -2.25 16 11 C -0.10 -2.26 5.62 31.17 0.18 -2.08 16 12 C -0.11 -2.69 6.83 31.59 0.22 -2.47 16 13 C -0.13 -4.52 6.37 31.81 0.20 -4.32 16 14 C 0.15 6.06 3.59 46.04 0.17 6.22 16 15 H 0.05 2.21 7.95 -2.39 -0.02 2.19 16 16 N -0.61 -30.85 2.98 -666.35 -1.99 -32.83 16 17 C -0.23 -12.90 10.33 84.03 0.87 -12.03 16 18 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 19 C -0.07 -3.82 5.49 84.86 0.47 -3.35 16 20 N -0.95 -56.45 10.06 21.65 0.22 -56.23 16 21 Si 0.97 46.66 29.55 68.60 2.03 48.69 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 24 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 25 C 0.14 6.66 5.68 86.55 0.49 7.15 16 26 C -0.12 -3.99 5.81 31.12 0.18 -3.81 16 27 H 0.05 0.65 8.09 -2.39 -0.02 0.63 16 28 H 0.07 0.63 7.87 -2.38 -0.02 0.61 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 0.77 7.87 -2.39 -0.02 0.75 16 32 H 0.10 0.77 7.92 -2.38 -0.02 0.75 16 33 H 0.42 7.11 7.64 -92.70 -0.71 6.40 16 34 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.08 1.52 7.47 -2.39 -0.02 1.50 16 37 H 0.08 1.57 7.10 -2.39 -0.02 1.56 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.05 1.82 7.28 -2.38 -0.02 1.80 16 41 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 43 H 0.08 4.60 5.46 -2.39 -0.01 4.59 16 44 H -0.01 -0.75 7.71 -2.39 -0.02 -0.77 16 45 H 0.09 2.45 7.11 -2.38 -0.02 2.43 16 46 H 0.05 1.83 7.62 -2.39 -0.02 1.81 16 Total: -1.00 -76.70 358.37 2.99 -73.70 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.25 Total: 15.33 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 5.73 Total: 5.06 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -3.99 Total: -108.47 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -1.02 Total: -34.31 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -76.70 2.99 -73.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107305285.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.596 kcal (2) G-P(sol) polarization free energy of solvation -76.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.98 seconds