Wall clock time and date at job start Tue Mar 31 2020 03:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99839 * 2 1 4 4 C 1.53004 * 109.46713 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46920 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47241 * 179.97438 * 5 4 3 7 7 O 1.21279 * 119.99476 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99830 * 180.02562 * 6 5 4 9 9 C 1.46502 * 119.99447 * 180.02562 * 8 6 5 10 10 C 1.54320 * 112.36421 * 299.33693 * 9 8 6 11 11 C 1.55058 * 103.93678 * 262.39503 * 10 9 8 12 12 C 1.55046 * 102.10897 * 319.94369 * 11 10 9 13 13 C 1.54321 * 103.94132 * 40.05769 * 12 11 10 14 14 H 1.08996 * 111.69109 * 97.20777 * 13 12 11 15 15 C 1.53775 * 109.06328 * 221.17134 * 13 12 11 16 16 N 1.47212 * 106.38427 * 94.88978 * 15 13 12 17 17 C 1.36938 * 126.70266 * 211.28074 * 16 15 13 18 18 H 1.08003 * 119.99838 * 162.12287 * 17 16 15 19 19 C 1.38809 * 120.00053 * 342.12229 * 17 16 15 20 20 N 1.31622 * 120.00110 * 159.76608 * 19 17 16 21 21 Si 1.86801 * 120.00282 * 339.76883 * 19 17 16 22 22 H 1.48504 * 109.47237 * 84.67888 * 21 19 17 23 23 H 1.48494 * 109.47415 * 204.68263 * 21 19 17 24 24 H 1.48499 * 109.46777 * 324.68216 * 21 19 17 25 25 C 1.47212 * 106.59502 * 31.27925 * 16 15 13 26 26 H 1.09005 * 109.47281 * 59.99930 * 1 2 3 27 27 H 1.09000 * 109.47222 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47179 * 299.99773 * 1 2 3 29 29 H 1.08994 * 109.46833 * 60.00285 * 3 2 1 30 30 H 1.08997 * 109.47015 * 300.00356 * 3 2 1 31 31 H 1.08994 * 109.47511 * 60.00366 * 4 3 2 32 32 H 1.09003 * 109.47050 * 299.99495 * 4 3 2 33 33 H 1.09004 * 109.46640 * 59.99848 * 5 4 3 34 34 H 1.08997 * 109.46796 * 300.00014 * 5 4 3 35 35 H 0.97000 * 120.00337 * 359.97438 * 8 6 5 36 36 H 1.08996 * 110.53441 * 143.78233 * 10 9 8 37 37 H 1.09003 * 110.53008 * 21.00435 * 10 9 8 38 38 H 1.08995 * 110.90475 * 201.73772 * 11 10 9 39 39 H 1.09007 * 110.89991 * 78.14479 * 11 10 9 40 40 H 1.09005 * 110.53753 * 158.67344 * 12 11 10 41 41 H 1.09005 * 110.53240 * 281.44325 * 12 11 10 42 42 H 1.09006 * 110.07201 * 214.12196 * 15 13 12 43 43 H 1.09007 * 110.07570 * 335.60060 * 15 13 12 44 44 H 0.97004 * 120.00051 * 180.02562 * 20 19 17 45 45 H 1.09001 * 110.07316 * 87.94971 * 25 16 15 46 46 H 1.08998 * 110.07728 * 209.49220 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6601 2.4634 0.0000 7 8 6.1816 1.3684 -0.0009 8 7 6.4240 3.5737 0.0010 9 6 7.8844 3.4580 0.0005 10 6 8.4149 2.7131 1.2436 11 6 8.8328 3.8509 2.2106 12 6 9.4838 4.8752 1.2457 13 6 8.5708 4.8464 0.0018 14 1 7.8429 5.6575 0.0176 15 6 9.4441 4.8902 -1.2632 16 7 9.6379 3.4925 -1.6826 17 6 10.7336 2.9735 -2.3191 18 1 10.9003 1.9064 -2.3237 19 6 11.6301 3.8188 -2.9583 20 7 12.8528 3.4065 -3.2178 21 14 11.1013 5.5415 -3.4502 22 1 11.2686 6.4595 -2.2950 23 1 11.9393 6.0123 -4.5821 24 1 9.6754 5.5221 -3.8646 25 6 8.4237 2.7617 -1.2840 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8463 0.8900 30 1 1.6885 1.8464 -0.8899 31 1 3.8568 0.6439 -0.8908 32 1 3.8574 0.6436 0.8892 33 1 3.8364 3.1227 0.8905 34 1 3.8358 3.1238 -0.8895 35 1 6.0068 4.4495 0.0014 36 1 9.2759 2.0980 0.9822 37 1 7.6286 2.1030 1.6881 38 1 9.5559 3.4927 2.9432 39 1 7.9614 4.2812 2.7044 40 1 9.4909 5.8697 1.6918 41 1 10.4956 4.5649 0.9847 42 1 8.9364 5.4497 -2.0490 43 1 10.4060 5.3510 -1.0381 44 1 13.4794 3.9973 -3.6642 45 1 7.6757 2.8197 -2.0747 46 1 8.6661 1.7201 -1.0733 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111619050.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:58 Heat of formation + Delta-G solvation = -64.719923 kcal Electronic energy + Delta-G solvation = -24921.709710 eV Core-core repulsion = 21425.698415 eV Total energy + Delta-G solvation = -3496.011295 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.35491 -38.62811 -38.00791 -34.64007 -33.74588 -33.48285 -31.70966 -29.77217 -28.69198 -27.61324 -25.89103 -25.17198 -24.13652 -22.26877 -21.06620 -20.71769 -19.61154 -19.01535 -17.39274 -16.78165 -16.58408 -16.33860 -15.94903 -15.33013 -15.06520 -15.04246 -14.38465 -14.04938 -13.87847 -13.71977 -13.41911 -13.30763 -12.92291 -12.40909 -12.30962 -12.01393 -11.97726 -11.52665 -11.30214 -11.26359 -11.12660 -11.08103 -10.92746 -10.76290 -10.68155 -10.39075 -10.37726 -10.09322 -9.96145 -9.89415 -9.54150 -9.39671 -8.88723 -8.62104 -7.04768 -5.91202 -3.22624 2.79436 3.12597 3.32314 3.47498 3.49468 3.62725 4.54739 4.57078 4.71499 4.72365 4.83631 4.92129 4.99915 5.01304 5.07705 5.10631 5.15067 5.17119 5.27545 5.33010 5.42629 5.44117 5.63205 5.65767 5.72391 5.84156 5.90266 5.93328 5.95914 6.10195 6.17007 6.20749 6.32601 6.44974 6.53789 6.59015 6.69830 6.74206 6.76161 6.87384 6.99409 7.68807 7.70758 8.33978 8.42265 8.85063 9.70264 10.21176 11.25000 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.021976 B = 0.003499 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.783567 B = 7999.339689 C = 8524.593674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.061 3.939 4 C -0.104 4.104 5 C -0.137 4.137 6 C 0.511 3.489 7 O -0.528 6.528 8 N -0.713 5.713 9 C 0.158 3.842 10 C -0.110 4.110 11 C -0.123 4.123 12 C -0.114 4.114 13 C -0.106 4.106 14 H 0.077 0.923 15 C 0.112 3.888 16 N -0.601 5.601 17 C -0.234 4.234 18 H 0.095 0.905 19 C 0.019 3.981 20 N -0.911 5.911 21 Si 0.884 3.116 22 H -0.286 1.286 23 H -0.303 1.303 24 H -0.276 1.276 25 C 0.143 3.857 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.396 0.604 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.080 0.920 42 H 0.023 0.977 43 H 0.068 0.932 44 H 0.263 0.737 45 H 0.019 0.981 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.900 2.732 10.559 24.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.015 4.015 4 C -0.142 4.142 5 C -0.178 4.178 6 C 0.297 3.703 7 O -0.403 6.403 8 N -0.364 5.364 9 C 0.070 3.930 10 C -0.149 4.149 11 C -0.161 4.161 12 C -0.152 4.152 13 C -0.126 4.126 14 H 0.095 0.905 15 C -0.014 4.014 16 N -0.326 5.326 17 C -0.361 4.361 18 H 0.112 0.888 19 C -0.179 4.179 20 N -0.555 5.555 21 Si 0.714 3.286 22 H -0.213 1.213 23 H -0.231 1.231 24 H -0.201 1.201 25 C 0.016 3.984 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.230 0.770 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.041 0.959 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.037 0.963 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.139 1.733 10.406 23.625 hybrid contribution -0.736 1.873 -0.495 2.072 sum -21.876 3.606 9.911 24.285 Atomic orbital electron populations 1.22739 0.81124 1.02781 0.99862 1.87907 1.19588 1.28055 1.95387 1.22565 0.94294 0.84653 1.00018 1.21215 0.91835 0.95975 1.05175 1.21545 0.92684 0.99249 1.04293 1.20476 0.89047 0.84587 0.76237 1.90738 1.74848 1.26390 1.48371 1.45992 1.06419 1.08535 1.75454 1.22006 0.77922 0.95834 0.97191 1.22620 1.01109 0.97116 0.94039 1.22580 0.99596 0.96506 0.97373 1.22496 0.99907 0.98528 0.94284 1.22791 0.97281 0.95220 0.97285 0.90476 1.21858 0.97983 0.88885 0.92681 1.44727 1.15997 1.04129 1.67707 1.18670 0.96532 0.94099 1.26817 0.88784 1.24957 0.95726 0.97636 0.99547 1.69816 1.03499 1.37051 1.45175 0.86978 0.78000 0.85840 0.77752 1.21305 1.23096 1.20133 1.21867 0.88581 0.96034 0.91944 0.94102 0.89629 0.94164 0.93371 0.93291 0.90091 0.90247 0.89027 0.88890 0.76982 0.90005 0.91400 0.91745 0.92288 0.92142 0.90170 0.95939 0.91425 0.92735 0.96281 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.14 10.70 -35.23 -0.38 -4.52 16 3 C 0.06 0.53 5.94 37.16 0.22 0.75 16 4 C -0.10 -1.08 4.87 -26.73 -0.13 -1.21 16 5 C -0.14 -1.23 5.70 -27.88 -0.16 -1.39 16 6 C 0.51 6.90 7.18 -10.99 -0.08 6.82 16 7 O -0.53 -9.37 14.06 5.56 0.08 -9.30 16 8 N -0.71 -9.31 5.24 -44.71 -0.23 -9.54 16 9 C 0.16 2.62 0.94 -128.67 -0.12 2.50 16 10 C -0.11 -1.80 5.57 -24.95 -0.14 -1.94 16 11 C -0.12 -1.69 6.92 -24.56 -0.17 -1.86 16 12 C -0.11 -1.75 6.22 -24.96 -0.16 -1.90 16 13 C -0.11 -1.73 3.62 -88.53 -0.32 -2.05 16 14 H 0.08 1.04 7.71 -51.93 -0.40 0.64 16 15 C 0.11 2.40 4.07 -3.25 -0.01 2.39 16 16 N -0.60 -14.76 3.21 -169.90 -0.55 -15.30 16 17 C -0.23 -6.75 10.67 -15.06 -0.16 -6.91 16 18 H 0.09 2.90 8.06 -52.48 -0.42 2.47 16 19 C 0.02 0.57 5.45 -17.43 -0.09 0.47 16 20 N -0.91 -28.35 13.97 55.49 0.78 -27.58 16 21 Si 0.88 22.67 24.36 -169.99 -4.14 18.53 16 22 H -0.29 -6.96 6.36 56.52 0.36 -6.60 16 23 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 24 H -0.28 -6.99 6.49 56.52 0.37 -6.62 16 25 C 0.14 3.06 5.47 -2.19 -0.01 3.05 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 32 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.40 3.86 8.29 -40.82 -0.34 3.52 16 36 H 0.08 1.53 7.57 -51.93 -0.39 1.14 16 37 H 0.07 1.11 6.69 -51.93 -0.35 0.76 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.08 1.44 7.58 -51.93 -0.39 1.04 16 42 H 0.02 0.50 6.16 -51.93 -0.32 0.18 16 43 H 0.07 1.55 5.22 -51.92 -0.27 1.28 16 44 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 45 H 0.02 0.43 8.08 -51.93 -0.42 0.01 16 46 H 0.06 1.40 7.63 -51.93 -0.40 1.01 16 LS Contribution 354.04 15.07 5.34 5.34 Total: -1.00 -34.12 354.04 -7.31 -41.44 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.98 Total: 0.88 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -0.22 Total: 0.05 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 0.00 Total: -52.42 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.30 Total: -13.82 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.14 Total: 18.53 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.12 -7.31 -41.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111619050.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.282 kcal (2) G-P(sol) polarization free energy of solvation -34.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds