Wall clock time and date at job start Tue Mar 31 2020 03:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47442 * 2 1 4 4 C 1.52995 * 109.47329 * 119.99971 * 2 1 3 5 5 O 1.42904 * 109.47081 * 64.99708 * 4 2 1 6 6 C 1.42893 * 114.00334 * 180.02562 * 5 4 2 7 7 H 1.09005 * 109.46931 * 330.00122 * 6 5 4 8 8 C 1.52999 * 109.47320 * 89.99718 * 6 5 4 9 9 C 1.50700 * 109.47266 * 210.00251 * 6 5 4 10 10 O 1.21280 * 119.99961 * 0.02562 * 9 6 5 11 11 N 1.34785 * 119.99971 * 179.97438 * 9 6 5 12 12 C 1.46496 * 119.99808 * 179.97438 * 11 9 6 13 13 H 1.08996 * 115.51531 * 9.59159 * 12 11 9 14 14 C 1.53000 * 117.44320 * 224.23997 * 12 11 9 15 15 H 1.09000 * 119.54049 * 4.12542 * 14 12 11 16 16 C 1.57692 * 116.10882 * 161.64328 * 14 12 11 17 17 N 1.48147 * 104.67665 * 87.30947 * 16 14 12 18 18 C 1.36930 * 127.83676 * 139.77240 * 17 16 14 19 19 H 1.08001 * 120.00316 * 344.33804 * 18 17 16 20 20 C 1.38819 * 120.00007 * 164.33835 * 18 17 16 21 21 N 1.31620 * 119.99791 * 350.56802 * 20 18 17 22 22 Si 1.86797 * 120.00195 * 170.56785 * 20 18 17 23 23 H 1.48505 * 109.46909 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47320 * 119.99928 * 22 20 18 25 25 H 1.48504 * 109.47141 * 240.00289 * 22 20 18 26 26 C 1.48146 * 104.32271 * 319.77126 * 17 16 14 27 27 C 1.53003 * 117.44056 * 155.00177 * 12 11 9 28 28 H 1.09004 * 119.53613 * 355.88355 * 27 12 11 29 29 H 1.09000 * 109.47242 * 59.99556 * 1 2 3 30 30 H 1.08994 * 109.47229 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46792 * 300.00138 * 1 2 3 32 32 H 1.08996 * 109.47028 * 240.00208 * 2 1 3 33 33 H 1.08991 * 109.47535 * 180.02562 * 3 2 1 34 34 H 1.09009 * 109.46745 * 300.00170 * 3 2 1 35 35 H 1.09008 * 109.47021 * 59.99744 * 3 2 1 36 36 H 1.09003 * 109.47408 * 305.00012 * 4 2 1 37 37 H 1.08998 * 109.47376 * 184.99686 * 4 2 1 38 38 H 1.09001 * 109.46983 * 179.97438 * 8 6 5 39 39 H 1.08998 * 109.47354 * 300.00674 * 8 6 5 40 40 H 1.09005 * 109.46788 * 60.00316 * 8 6 5 41 41 H 0.96999 * 120.00103 * 0.02562 * 11 9 6 42 42 H 1.09005 * 110.92180 * 328.22821 * 16 14 12 43 43 H 1.09002 * 109.93433 * 205.89156 * 16 14 12 44 44 H 0.96993 * 120.00075 * 179.97438 * 21 20 18 45 45 H 1.08994 * 110.41169 * 280.80078 * 26 17 16 46 46 H 1.08997 * 110.40296 * 158.36490 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.6619 -2.0981 1.1920 6 6 2.0913 -2.8661 2.3179 7 1 3.0165 -2.4461 2.7127 8 6 1.0118 -2.8299 3.4016 9 6 2.3284 -4.2922 1.8924 10 8 2.1480 -4.6186 0.7384 11 7 2.7421 -5.2046 2.7941 12 6 2.9720 -6.5910 2.3805 13 1 2.9460 -6.7709 1.3058 14 6 2.4377 -7.6969 3.2929 15 1 1.8521 -7.4313 4.1730 16 6 2.2907 -9.1247 2.6399 17 7 3.6167 -9.7595 2.8229 18 6 3.8866 -11.0588 3.1604 19 1 3.1065 -11.6836 3.5697 20 6 5.1629 -11.5729 2.9766 21 7 6.0621 -10.8796 2.3109 22 14 5.6042 -13.2488 3.6738 23 1 4.4258 -13.8190 4.3750 24 1 6.0089 -14.1539 2.5684 25 1 6.7287 -13.1053 4.6331 26 6 4.5845 -8.6696 2.5577 27 6 3.9534 -7.4209 3.2107 28 1 4.4969 -6.9497 4.0297 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8900 36 1 1.6054 -0.2617 2.1370 37 1 3.1263 -0.6444 1.2951 38 1 1.3392 -3.4161 4.2602 39 1 0.8402 -1.7985 3.7093 40 1 0.0866 -3.2500 3.0068 41 1 2.8867 -4.9434 3.7170 42 1 2.0505 -9.0450 1.5796 43 1 1.5214 -9.6944 3.1613 44 1 6.9540 -11.2386 2.1828 45 1 4.7026 -8.5187 1.4848 46 1 5.5461 -8.8947 3.0190 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113964936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:29 Heat of formation + Delta-G solvation = -33.938814 kcal Electronic energy + Delta-G solvation = -23806.715895 eV Core-core repulsion = 20312.039369 eV Total energy + Delta-G solvation = -3494.676526 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.09040 -38.74103 -37.78832 -35.37748 -34.49092 -32.85615 -31.35028 -30.01242 -27.44168 -27.02268 -26.53170 -25.74940 -24.29945 -21.76069 -20.69292 -20.48303 -20.03976 -19.29211 -17.36036 -17.24182 -16.78426 -16.24643 -15.69156 -15.09397 -14.96921 -14.68990 -14.23502 -13.91730 -13.61191 -13.23804 -13.23296 -12.95835 -12.73860 -12.67578 -12.58446 -12.39464 -12.22130 -11.69201 -11.49954 -11.46946 -11.36127 -11.17416 -10.98338 -10.86446 -10.85232 -10.35548 -10.20679 -10.13714 -10.07246 -9.74653 -9.50972 -9.20262 -8.74759 -8.32557 -6.87659 -5.80677 -3.14816 2.60151 2.75280 3.37384 3.43421 3.46103 3.66805 4.30799 4.45422 4.47244 4.54407 4.61978 4.67402 4.76685 4.86272 5.05930 5.15783 5.16703 5.27845 5.30140 5.35687 5.37171 5.39788 5.44881 5.55673 5.57713 5.64359 5.73812 5.77028 5.80686 5.86302 5.99134 6.08306 6.14543 6.23182 6.51371 6.69290 6.74802 6.88877 6.92221 7.34447 7.52412 7.57419 7.70979 8.19378 8.29266 9.10056 9.72814 10.49944 11.33886 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.044187 B = 0.002377 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.516486 B =11774.934780 C =11959.098741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.145 4.145 4 C 0.063 3.937 5 O -0.353 6.353 6 C 0.073 3.927 7 H 0.086 0.914 8 C -0.170 4.170 9 C 0.515 3.485 10 O -0.517 6.517 11 N -0.696 5.696 12 C 0.095 3.905 13 H 0.132 0.868 14 C -0.185 4.185 15 H 0.107 0.893 16 C 0.157 3.843 17 N -0.593 5.593 18 C -0.226 4.226 19 H 0.078 0.922 20 C -0.006 4.006 21 N -0.915 5.915 22 Si 0.913 3.087 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.185 3.815 27 C -0.180 4.180 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.397 0.603 42 H 0.031 0.969 43 H 0.050 0.950 44 H 0.254 0.746 45 H 0.027 0.973 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.201 23.608 2.374 25.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.013 4.013 5 O -0.271 6.271 6 C 0.011 3.989 7 H 0.103 0.897 8 C -0.228 4.228 9 C 0.300 3.700 10 O -0.391 6.391 11 N -0.347 5.347 12 C -0.011 4.011 13 H 0.149 0.851 14 C -0.206 4.206 15 H 0.125 0.875 16 C 0.030 3.970 17 N -0.316 5.316 18 C -0.354 4.354 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.561 5.561 22 Si 0.743 3.257 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.059 3.941 27 C -0.201 4.201 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.231 0.769 42 H 0.049 0.951 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.045 0.955 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.254 23.088 1.351 24.556 hybrid contribution 0.569 -0.480 1.225 1.433 sum -7.686 22.608 2.575 24.017 Atomic orbital electron populations 1.21785 0.94484 1.02650 1.01246 1.21092 0.96890 0.95474 0.97996 1.21789 1.01111 0.95197 1.02190 1.22708 0.98472 0.81854 0.98290 1.88048 1.77626 1.19817 1.41657 1.21863 0.98503 0.90530 0.88008 0.89670 1.22240 0.99761 1.03155 0.97626 1.20308 0.77158 0.86608 0.85974 1.90731 1.49477 1.80420 1.18424 1.45331 1.68335 1.08884 1.12151 1.21889 1.03519 0.77452 0.98228 0.85077 1.25093 0.97928 0.96105 1.01496 0.87548 1.21700 0.89915 0.88826 0.96547 1.45134 0.99415 1.06523 1.80561 1.19036 0.96032 0.85687 1.34679 0.90447 1.24915 0.97236 0.98481 0.99723 1.69909 1.04728 1.38149 1.43287 0.86033 0.78112 0.83244 0.78273 1.20348 1.21666 1.21638 1.21065 0.94658 0.81899 0.96463 1.24640 0.92933 1.00183 1.02344 0.88106 0.92804 0.91623 0.93038 0.90060 0.92489 0.91961 0.92571 0.93224 0.93223 0.90959 0.91345 0.90932 0.76870 0.95140 0.93113 0.93567 0.95545 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.09 37.16 0.34 -0.83 16 2 C -0.10 -0.79 3.16 -90.62 -0.29 -1.08 16 3 C -0.15 -0.88 9.19 37.16 0.34 -0.54 16 4 C 0.06 0.55 5.13 37.16 0.19 0.75 16 5 O -0.35 -4.33 9.05 -55.14 -0.50 -4.83 16 6 C 0.07 0.77 3.14 -27.88 -0.09 0.68 16 7 H 0.09 0.69 7.79 -51.93 -0.40 0.29 16 8 C -0.17 -1.36 9.42 37.16 0.35 -1.01 16 9 C 0.51 7.54 7.23 -10.98 -0.08 7.46 16 10 O -0.52 -10.12 16.07 -14.35 -0.23 -10.35 16 11 N -0.70 -9.33 5.46 -53.81 -0.29 -9.62 16 12 C 0.09 1.62 5.92 -67.93 -0.40 1.21 16 13 H 0.13 2.59 7.40 -51.93 -0.38 2.20 16 14 C -0.18 -3.28 7.34 -87.38 -0.64 -3.92 16 15 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 16 C 0.16 3.35 7.09 -0.57 0.00 3.35 16 17 N -0.59 -15.27 3.38 -166.73 -0.56 -15.83 16 18 C -0.23 -6.30 10.35 -15.06 -0.16 -6.46 16 19 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 20 C -0.01 -0.18 5.40 -17.43 -0.09 -0.28 16 21 N -0.91 -26.84 10.88 55.49 0.60 -26.23 16 22 Si 0.91 21.90 29.56 -169.99 -5.03 16.88 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 C 0.19 4.47 5.70 -2.41 -0.01 4.45 16 27 C -0.18 -3.37 6.98 -89.22 -0.62 -3.99 16 28 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.65 7.82 -51.93 -0.41 0.24 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 35 H 0.06 0.30 8.14 -51.92 -0.42 -0.13 16 36 H 0.05 0.35 7.87 -51.93 -0.41 -0.06 16 37 H 0.05 0.40 8.09 -51.93 -0.42 -0.02 16 38 H 0.07 0.46 7.56 -51.93 -0.39 0.07 16 39 H 0.07 0.44 7.87 -51.93 -0.41 0.03 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.40 3.99 8.24 -40.82 -0.34 3.65 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.09 2.42 6.53 -51.93 -0.34 2.08 16 LS Contribution 373.90 15.07 5.63 5.63 Total: -1.00 -33.26 373.90 -9.66 -42.92 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -8.12 Total: 1.62 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -1.17 Total: -0.20 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.25 Total: -51.69 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.73 Total: -15.17 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.26 -9.66 -42.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113964936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.985 kcal (2) G-P(sol) polarization free energy of solvation -33.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds