Wall clock time and date at job start Tue Mar 31 2020 03:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47442 * 2 1 4 4 C 1.52995 * 109.47329 * 119.99971 * 2 1 3 5 5 O 1.42904 * 109.47081 * 64.99708 * 4 2 1 6 6 C 1.42893 * 114.00334 * 180.02562 * 5 4 2 7 7 H 1.09005 * 109.46931 * 330.00122 * 6 5 4 8 8 C 1.52999 * 109.47320 * 89.99718 * 6 5 4 9 9 C 1.50700 * 109.47266 * 210.00251 * 6 5 4 10 10 O 1.21280 * 119.99961 * 0.02562 * 9 6 5 11 11 N 1.34785 * 119.99971 * 179.97438 * 9 6 5 12 12 C 1.46496 * 119.99808 * 179.97438 * 11 9 6 13 13 H 1.08996 * 115.51531 * 9.59159 * 12 11 9 14 14 C 1.53000 * 117.44320 * 224.23997 * 12 11 9 15 15 H 1.09000 * 119.54049 * 4.12542 * 14 12 11 16 16 C 1.57692 * 116.10882 * 161.64328 * 14 12 11 17 17 N 1.48147 * 104.67665 * 87.30947 * 16 14 12 18 18 C 1.36930 * 127.83676 * 139.77240 * 17 16 14 19 19 H 1.08001 * 120.00316 * 344.33804 * 18 17 16 20 20 C 1.38819 * 120.00007 * 164.33835 * 18 17 16 21 21 N 1.31620 * 119.99791 * 350.56802 * 20 18 17 22 22 Si 1.86797 * 120.00195 * 170.56785 * 20 18 17 23 23 H 1.48505 * 109.46909 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47320 * 119.99928 * 22 20 18 25 25 H 1.48504 * 109.47141 * 240.00289 * 22 20 18 26 26 C 1.48146 * 104.32271 * 319.77126 * 17 16 14 27 27 C 1.53003 * 117.44056 * 155.00177 * 12 11 9 28 28 H 1.09004 * 119.53613 * 355.88355 * 27 12 11 29 29 H 1.09000 * 109.47242 * 59.99556 * 1 2 3 30 30 H 1.08994 * 109.47229 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46792 * 300.00138 * 1 2 3 32 32 H 1.08996 * 109.47028 * 240.00208 * 2 1 3 33 33 H 1.08991 * 109.47535 * 180.02562 * 3 2 1 34 34 H 1.09009 * 109.46745 * 300.00170 * 3 2 1 35 35 H 1.09008 * 109.47021 * 59.99744 * 3 2 1 36 36 H 1.09003 * 109.47408 * 305.00012 * 4 2 1 37 37 H 1.08998 * 109.47376 * 184.99686 * 4 2 1 38 38 H 1.09001 * 109.46983 * 179.97438 * 8 6 5 39 39 H 1.08998 * 109.47354 * 300.00674 * 8 6 5 40 40 H 1.09005 * 109.46788 * 60.00316 * 8 6 5 41 41 H 0.96999 * 120.00103 * 0.02562 * 11 9 6 42 42 H 1.09005 * 110.92180 * 328.22821 * 16 14 12 43 43 H 1.09002 * 109.93433 * 205.89156 * 16 14 12 44 44 H 0.96993 * 120.00075 * 179.97438 * 21 20 18 45 45 H 1.08994 * 110.41169 * 280.80078 * 26 17 16 46 46 H 1.08997 * 110.40296 * 158.36490 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.6619 -2.0981 1.1920 6 6 2.0913 -2.8661 2.3179 7 1 3.0165 -2.4461 2.7127 8 6 1.0118 -2.8299 3.4016 9 6 2.3284 -4.2922 1.8924 10 8 2.1480 -4.6186 0.7384 11 7 2.7421 -5.2046 2.7941 12 6 2.9720 -6.5910 2.3805 13 1 2.9460 -6.7709 1.3058 14 6 2.4377 -7.6969 3.2929 15 1 1.8521 -7.4313 4.1730 16 6 2.2907 -9.1247 2.6399 17 7 3.6167 -9.7595 2.8229 18 6 3.8866 -11.0588 3.1604 19 1 3.1065 -11.6836 3.5697 20 6 5.1629 -11.5729 2.9766 21 7 6.0621 -10.8796 2.3109 22 14 5.6042 -13.2488 3.6738 23 1 4.4258 -13.8190 4.3750 24 1 6.0089 -14.1539 2.5684 25 1 6.7287 -13.1053 4.6331 26 6 4.5845 -8.6696 2.5577 27 6 3.9534 -7.4209 3.2107 28 1 4.4969 -6.9497 4.0297 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8900 36 1 1.6054 -0.2617 2.1370 37 1 3.1263 -0.6444 1.2951 38 1 1.3392 -3.4161 4.2602 39 1 0.8402 -1.7985 3.7093 40 1 0.0866 -3.2500 3.0068 41 1 2.8867 -4.9434 3.7170 42 1 2.0505 -9.0450 1.5796 43 1 1.5214 -9.6944 3.1613 44 1 6.9540 -11.2386 2.1828 45 1 4.7026 -8.5187 1.4848 46 1 5.5461 -8.8947 3.0190 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113964936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:27 Heat of formation + Delta-G solvation = -55.082168 kcal Electronic energy + Delta-G solvation = -23807.632739 eV Core-core repulsion = 20312.039369 eV Total energy + Delta-G solvation = -3495.593371 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.28665 -40.05516 -38.88109 -36.13359 -36.04761 -34.46108 -32.64791 -31.45852 -28.81508 -27.99979 -27.64934 -27.14842 -25.33097 -23.35030 -22.01178 -21.53367 -21.11552 -20.88938 -18.87472 -18.25922 -18.23781 -17.35627 -16.77975 -16.52836 -16.05935 -15.95308 -15.48828 -15.03179 -14.96737 -14.71269 -14.61803 -13.91614 -13.79597 -13.61513 -13.37686 -13.32541 -13.20138 -13.11143 -12.92247 -12.87096 -12.74991 -12.40128 -12.09362 -11.98468 -11.97603 -11.89698 -11.78118 -11.69393 -11.49579 -11.02414 -10.87941 -10.73634 -10.46210 -9.73356 -8.94343 -7.93229 -5.30278 1.46202 1.47161 1.47374 1.58992 1.69458 2.47254 2.82628 2.85937 3.27488 3.52490 3.64986 3.81314 3.87554 3.94076 3.95483 4.00604 4.06577 4.11429 4.23234 4.29764 4.47614 4.50543 4.63222 4.71281 4.73863 4.79110 4.83095 4.84903 4.88243 4.96900 5.01725 5.06261 5.21810 5.25580 5.26371 5.38915 5.40835 5.43744 5.44976 5.51996 5.62988 6.13754 6.15057 6.52985 6.98724 7.19527 7.65509 8.44170 9.21091 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.044187 B = 0.002377 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.516486 B =11774.934780 C =11959.098741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 C -0.140 4.140 4 C 0.059 3.941 5 O -0.387 6.387 6 C 0.077 3.923 7 H 0.118 0.882 8 C -0.164 4.164 9 C 0.510 3.490 10 O -0.575 6.575 11 N -0.677 5.677 12 C 0.111 3.889 13 H 0.099 0.901 14 C -0.162 4.162 15 H 0.145 0.855 16 C 0.147 3.853 17 N -0.617 5.617 18 C -0.240 4.240 19 H 0.084 0.916 20 C -0.065 4.065 21 N -0.949 5.949 22 Si 0.983 3.017 23 H -0.263 1.263 24 H -0.294 1.294 25 H -0.289 1.289 26 C 0.188 3.812 27 C -0.177 4.177 28 H 0.130 0.870 29 H 0.059 0.941 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.053 0.947 41 H 0.420 0.580 42 H 0.018 0.982 43 H 0.063 0.937 44 H 0.250 0.750 45 H -0.007 1.007 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.134 25.614 5.109 27.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 C -0.197 4.197 4 C -0.017 4.017 5 O -0.306 6.306 6 C 0.016 3.984 7 H 0.135 0.865 8 C -0.222 4.222 9 C 0.297 3.703 10 O -0.453 6.453 11 N -0.329 5.329 12 C 0.004 3.996 13 H 0.117 0.883 14 C -0.183 4.183 15 H 0.162 0.838 16 C 0.021 3.979 17 N -0.341 5.341 18 C -0.368 4.368 19 H 0.102 0.898 20 C -0.258 4.258 21 N -0.597 5.597 22 Si 0.811 3.189 23 H -0.187 1.187 24 H -0.221 1.221 25 H -0.215 1.215 26 C 0.062 3.938 27 C -0.198 4.198 28 H 0.148 0.852 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.072 0.928 41 H 0.258 0.742 42 H 0.036 0.964 43 H 0.082 0.918 44 H 0.059 0.941 45 H 0.011 0.989 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.215 25.134 4.135 27.088 hybrid contribution 0.819 -1.075 0.267 1.378 sum -8.397 24.059 4.402 25.860 Atomic orbital electron populations 1.21751 0.94511 1.01311 1.02278 1.21139 0.96933 0.96684 0.97110 1.21746 1.01306 0.93591 1.03053 1.22908 0.99154 0.80369 0.99275 1.88025 1.78115 1.21578 1.42898 1.21974 1.00964 0.87353 0.88078 0.86469 1.22246 0.97874 1.04997 0.97043 1.21252 0.75552 0.88363 0.85093 1.90713 1.51973 1.81614 1.21029 1.45085 1.67592 1.06962 1.13277 1.21391 1.02188 0.79524 0.96525 0.88321 1.25008 0.97178 0.94003 1.02135 0.83756 1.21838 0.88449 0.91135 0.96449 1.45436 1.01375 1.06562 1.80688 1.19438 0.96341 0.86917 1.34139 0.89842 1.25802 0.97248 1.02349 1.00419 1.70111 1.04833 1.39886 1.44833 0.84948 0.78034 0.78653 0.77265 1.18701 1.22067 1.21521 1.20803 0.93924 0.84378 0.94687 1.24317 0.93399 0.98950 1.03100 0.85236 0.92219 0.94068 0.91574 0.92393 0.92143 0.91592 0.91219 0.90853 0.92479 0.88746 0.89026 0.92752 0.74200 0.96414 0.91826 0.94063 0.98911 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.09 71.98 0.65 -1.50 16 2 C -0.10 -1.54 3.16 -10.80 -0.03 -1.58 16 3 C -0.14 -1.41 9.19 71.98 0.66 -0.75 16 4 C 0.06 0.90 5.13 71.98 0.37 1.27 16 5 O -0.39 -9.03 9.05 -129.94 -1.18 -10.21 16 6 C 0.08 1.44 3.14 29.85 0.09 1.53 16 7 H 0.12 1.43 7.79 -2.38 -0.02 1.41 16 8 C -0.16 -2.03 9.42 71.98 0.68 -1.35 16 9 C 0.51 14.34 7.23 87.66 0.63 14.97 16 10 O -0.58 -23.06 16.07 16.01 0.26 -22.80 16 11 N -0.68 -16.53 5.46 -442.53 -2.41 -18.95 16 12 C 0.11 3.69 5.92 44.99 0.27 3.96 16 13 H 0.10 4.05 7.40 -2.39 -0.02 4.03 16 14 C -0.16 -5.43 7.34 -8.70 -0.06 -5.49 16 15 H 0.14 3.83 8.14 -2.39 -0.02 3.81 16 16 C 0.15 6.27 7.09 87.72 0.62 6.89 16 17 N -0.62 -32.37 3.38 -681.41 -2.30 -34.68 16 18 C -0.24 -13.53 10.35 84.04 0.87 -12.66 16 19 H 0.08 4.48 7.85 -2.91 -0.02 4.46 16 20 C -0.06 -3.69 5.40 84.86 0.46 -3.23 16 21 N -0.95 -57.66 10.88 21.65 0.24 -57.43 16 22 Si 0.98 45.56 29.56 68.60 2.03 47.58 16 23 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 26 C 0.19 9.41 5.70 86.54 0.49 9.91 16 27 C -0.18 -6.45 6.98 -9.88 -0.07 -6.52 16 28 H 0.13 4.02 8.14 -2.39 -0.02 4.00 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.04 0.82 7.82 -2.39 -0.02 0.80 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 36 H 0.07 0.77 7.87 -2.39 -0.02 0.75 16 37 H 0.06 0.78 8.09 -2.39 -0.02 0.76 16 38 H 0.09 0.75 7.56 -2.39 -0.02 0.73 16 39 H 0.09 0.75 7.87 -2.39 -0.02 0.73 16 40 H 0.05 0.89 8.14 -2.38 -0.02 0.88 16 41 H 0.42 6.64 8.24 -92.71 -0.76 5.88 16 42 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 43 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 45 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 46 H 0.06 3.35 6.53 -2.39 -0.02 3.33 16 Total: -1.00 -76.94 373.90 2.44 -74.50 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.18 Total: 16.53 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 5.63 Total: 5.45 kcal Atomic # 7 Polarization: -106.57 SS G_CDS: -4.48 Total: -111.05 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -0.92 Total: -33.01 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -76.94 2.44 -74.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113964936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.415 kcal (2) G-P(sol) polarization free energy of solvation -76.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds