Wall clock time and date at job start Tue Mar 31 2020 03:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47508 * 2 1 4 4 O 1.42897 * 109.47472 * 239.99284 * 2 1 3 5 5 C 1.42899 * 113.99812 * 90.00231 * 4 2 1 6 6 C 1.53007 * 109.47171 * 180.02562 * 5 4 2 7 7 C 1.53000 * 117.49598 * 243.74421 * 6 5 4 8 8 C 1.52999 * 117.49808 * 175.08753 * 6 5 4 9 9 C 1.50702 * 109.47018 * 119.99510 * 2 1 3 10 10 O 1.21283 * 120.00219 * 107.05551 * 9 2 1 11 11 N 1.34781 * 120.00267 * 287.05665 * 9 2 1 12 12 C 1.47020 * 125.64538 * 5.17722 * 11 9 2 13 13 C 1.54323 * 107.27321 * 178.98572 * 12 11 9 14 14 C 1.55160 * 102.94176 * 337.81235 * 13 12 11 15 15 H 1.09007 * 110.99664 * 277.38568 * 14 13 12 16 16 N 1.46496 * 111.00709 * 153.57407 * 14 13 12 17 17 C 1.46500 * 120.00037 * 301.45536 * 16 14 13 18 18 C 1.36933 * 120.00024 * 121.17326 * 16 14 13 19 19 H 1.08001 * 119.99997 * 325.62681 * 18 16 14 20 20 C 1.38810 * 119.99860 * 145.62405 * 18 16 14 21 21 N 1.31626 * 119.99906 * 158.25040 * 20 18 16 22 22 Si 1.86803 * 120.00274 * 338.24770 * 20 18 16 23 23 H 1.48503 * 109.46961 * 95.37393 * 22 20 18 24 24 H 1.48492 * 109.47331 * 215.37940 * 22 20 18 25 25 H 1.48505 * 109.46859 * 335.37985 * 22 20 18 26 26 C 1.47423 * 125.65017 * 185.23482 * 11 9 2 27 27 H 1.09005 * 109.46975 * 185.53463 * 1 2 3 28 28 H 1.09004 * 109.47197 * 305.53093 * 1 2 3 29 29 H 1.08995 * 109.47089 * 65.53642 * 1 2 3 30 30 H 1.09005 * 109.46943 * 299.99993 * 5 4 2 31 31 H 1.08991 * 109.47161 * 60.00059 * 5 4 2 32 32 H 1.09003 * 115.54871 * 29.41403 * 6 5 4 33 33 H 1.08998 * 117.50055 * 0.02562 * 7 6 5 34 34 H 1.08998 * 117.49414 * 145.01706 * 7 6 5 35 35 H 1.09001 * 117.49865 * 214.97781 * 8 6 5 36 36 H 1.09003 * 117.49922 * 359.96857 * 8 6 5 37 37 H 1.09005 * 109.88316 * 59.56757 * 12 11 9 38 38 H 1.08995 * 109.88461 * 298.40576 * 12 11 9 39 39 H 1.08994 * 110.72641 * 219.44401 * 13 12 11 40 40 H 1.09001 * 110.71504 * 96.17087 * 13 12 11 41 41 H 1.08993 * 109.47597 * 86.17010 * 17 16 14 42 42 H 1.08999 * 109.47047 * 206.18093 * 17 16 14 43 43 H 1.09004 * 109.46450 * 326.17358 * 17 16 14 44 44 H 0.97003 * 119.99244 * 179.97438 * 21 20 18 45 45 H 1.08998 * 110.36837 * 85.24208 * 26 11 9 46 46 H 1.08997 * 110.36329 * 322.91576 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6738 -1.1666 5 6 2.2002 0.1827 -2.2940 6 6 2.7081 -0.6411 -3.4791 7 6 4.1062 -0.3230 -4.0130 8 6 2.8688 0.0762 -4.8209 9 6 2.0323 -0.7103 1.2305 10 8 2.5249 -1.8145 1.1348 11 7 1.9341 -0.1186 2.4375 12 6 1.2666 1.1622 2.7121 13 6 1.3839 1.4242 4.2284 14 6 1.6162 0.0045 4.8095 15 1 0.6721 -0.5262 4.9335 16 7 2.3494 0.0689 6.0761 17 6 3.6734 0.6941 6.1251 18 6 1.7947 -0.4500 7.2155 19 1 0.7272 -0.3953 7.3697 20 6 2.6046 -1.0464 8.1722 21 7 2.1836 -1.1569 9.4144 22 14 4.2917 -1.6922 7.6968 23 1 5.3182 -0.6612 7.9944 24 1 4.5872 -2.9234 8.4726 25 1 4.3109 -2.0052 6.2453 26 6 2.4794 -0.6479 3.7008 27 1 -0.3633 -1.0229 0.0991 28 1 -0.3634 0.5972 0.8363 29 1 -0.3633 0.4256 -0.9354 30 1 1.2538 0.6544 -2.5588 31 1 2.9320 0.9511 -2.0450 32 1 2.3860 -1.6823 -3.5003 33 1 4.6643 0.4728 -3.5198 34 1 4.7037 -1.1549 -4.3858 35 1 2.6529 -0.4932 -5.7250 36 1 2.6122 1.1349 -4.8596 37 1 0.2164 1.1016 2.4265 38 1 1.7577 1.9624 2.1586 39 1 0.4612 1.8542 4.6180 40 1 2.2334 2.0726 4.4431 41 1 3.5629 1.7679 6.2759 42 1 4.2459 0.2685 6.9492 43 1 4.1965 0.5110 5.1865 44 1 2.7495 -1.5740 10.0829 45 1 3.5242 -0.3585 3.8139 46 1 2.3799 -1.7329 3.7318 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189231230.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:44 Heat of formation + Delta-G solvation = -38.058075 kcal Electronic energy + Delta-G solvation = -24496.873465 eV Core-core repulsion = 21002.018315 eV Total energy + Delta-G solvation = -3494.855151 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.38352 -39.65369 -38.77914 -37.43762 -36.70220 -33.93918 -32.77747 -31.38808 -29.53582 -28.13920 -28.08601 -26.17504 -24.50072 -23.40737 -23.26282 -21.76738 -21.06649 -20.40502 -19.02873 -18.50179 -17.89305 -17.62453 -16.99321 -16.85971 -16.57800 -15.77406 -15.54530 -15.44176 -14.86595 -14.80953 -14.59516 -14.37495 -14.20507 -14.05579 -13.96930 -13.52552 -13.45292 -13.34712 -13.08215 -12.70127 -12.50885 -12.39531 -12.33012 -12.21897 -12.05583 -11.99442 -11.61274 -11.46342 -11.40846 -11.29617 -10.91674 -10.68190 -10.40975 -9.72041 -8.85088 -8.23700 -5.60385 1.25417 1.40033 1.47772 1.48789 1.61629 2.36777 2.62185 2.95878 3.02923 3.25971 3.40927 3.79144 3.83486 3.88779 3.94417 3.95481 4.03086 4.10421 4.17750 4.24086 4.32819 4.36631 4.47150 4.51340 4.60254 4.66490 4.67231 4.76513 4.77405 4.81134 4.87549 4.94877 4.99557 5.00147 5.14302 5.20315 5.21077 5.24164 5.27601 5.37408 5.87939 6.10838 6.13046 6.49065 6.90342 7.06571 7.56662 7.96767 8.95660 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.028833 B = 0.003061 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.871751 B = 9146.141170 C = 9592.406503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.084 3.916 3 H 0.117 0.883 4 O -0.390 6.390 5 C 0.088 3.912 6 C -0.175 4.175 7 C -0.187 4.187 8 C -0.152 4.152 9 C 0.518 3.482 10 O -0.584 6.584 11 N -0.611 5.611 12 C 0.099 3.901 13 C -0.137 4.137 14 C 0.164 3.836 15 H 0.074 0.926 16 N -0.609 5.609 17 C 0.104 3.896 18 C -0.257 4.257 19 H 0.054 0.946 20 C -0.021 4.021 21 N -0.945 5.945 22 Si 0.943 3.057 23 H -0.270 1.270 24 H -0.312 1.312 25 H -0.269 1.269 26 C 0.089 3.911 27 H 0.047 0.953 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.041 0.959 42 H 0.027 0.973 43 H 0.055 0.945 44 H 0.264 0.736 45 H 0.062 0.938 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.732 11.120 -27.074 29.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.023 3.977 3 H 0.135 0.865 4 O -0.309 6.309 5 C 0.012 3.988 6 C -0.194 4.194 7 C -0.224 4.224 8 C -0.188 4.188 9 C 0.307 3.693 10 O -0.463 6.463 11 N -0.345 5.345 12 C -0.022 4.022 13 C -0.176 4.176 14 C 0.056 3.944 15 H 0.092 0.908 16 N -0.332 5.332 17 C -0.040 4.040 18 C -0.387 4.387 19 H 0.072 0.928 20 C -0.218 4.218 21 N -0.589 5.589 22 Si 0.773 3.227 23 H -0.197 1.197 24 H -0.241 1.241 25 H -0.194 1.194 26 C -0.036 4.036 27 H 0.067 0.933 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.059 0.941 42 H 0.045 0.955 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.394 10.271 -27.052 28.970 hybrid contribution 0.977 -0.967 0.690 1.538 sum -0.417 9.304 -26.363 27.959 Atomic orbital electron populations 1.22281 0.91441 1.03284 1.05425 1.21905 0.96513 0.96324 0.82925 0.86529 1.88022 1.86877 1.36052 1.19958 1.22319 1.00687 0.91703 0.84092 1.22143 1.01627 1.00744 0.94861 1.23171 0.90925 1.03887 1.04411 1.23083 1.00493 1.01828 0.93440 1.20957 0.78378 0.85580 0.84377 1.90689 1.47186 1.22079 1.86356 1.48470 1.55865 1.24047 1.06152 1.22463 0.98914 0.84201 0.96645 1.23042 1.03998 0.97266 0.93343 1.21685 0.93979 0.95550 0.83155 0.90797 1.44066 1.18243 1.66551 1.04340 1.21428 0.86270 0.97011 0.99241 1.18745 0.93262 1.31748 0.94911 0.92844 1.25994 1.01815 0.98517 0.95436 1.69962 1.40012 1.47079 1.01878 0.85899 0.81618 0.76969 0.78167 1.19731 1.24129 1.19360 1.22710 0.98606 0.98292 0.83966 0.93349 0.88555 0.88578 0.90349 0.92044 0.88569 0.88244 0.88742 0.87489 0.86948 0.88423 0.88105 0.88677 0.90138 0.94112 0.95495 0.92653 0.92737 0.91951 0.93921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 9.39 71.98 0.68 -1.91 16 2 C 0.08 1.77 2.53 29.85 0.08 1.84 16 3 H 0.12 1.61 7.53 -2.39 -0.02 1.59 16 4 O -0.39 -9.86 9.55 -130.27 -1.24 -11.11 16 5 C 0.09 1.43 6.03 71.98 0.43 1.86 16 6 C -0.18 -2.93 6.05 -10.79 -0.07 -2.99 16 7 C -0.19 -2.69 10.18 30.62 0.31 -2.37 16 8 C -0.15 -1.64 10.25 30.62 0.31 -1.32 16 9 C 0.52 16.31 7.16 87.66 0.63 16.94 16 10 O -0.58 -25.14 16.78 15.67 0.26 -24.88 16 11 N -0.61 -17.49 3.33 -811.79 -2.70 -20.19 16 12 C 0.10 1.87 6.09 86.73 0.53 2.39 16 13 C -0.14 -3.40 6.54 31.78 0.21 -3.19 16 14 C 0.16 5.95 3.55 46.39 0.16 6.11 16 15 H 0.07 2.86 7.96 -2.38 -0.02 2.84 16 16 N -0.61 -27.34 2.58 -695.02 -1.79 -29.13 16 17 C 0.10 4.19 8.38 127.77 1.07 5.26 16 18 C -0.26 -14.17 9.91 84.03 0.83 -13.34 16 19 H 0.05 3.21 8.06 -2.91 -0.02 3.18 16 20 C -0.02 -1.21 5.32 84.86 0.45 -0.76 16 21 N -0.95 -58.52 13.97 21.65 0.30 -58.22 16 22 Si 0.94 46.95 24.86 68.60 1.71 48.65 16 23 H -0.27 -12.59 6.67 99.48 0.66 -11.93 16 24 H -0.31 -15.93 7.11 99.48 0.71 -15.22 16 25 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 26 C 0.09 3.24 6.49 86.86 0.56 3.80 16 27 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.10 1.09 5.66 -2.38 -0.01 1.08 16 29 H 0.10 1.00 7.78 -2.39 -0.02 0.98 16 30 H 0.08 0.88 7.78 -2.38 -0.02 0.86 16 31 H 0.06 0.85 7.82 -2.39 -0.02 0.83 16 32 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.10 1.32 8.03 -2.39 -0.02 1.30 16 34 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.10 1.36 6.03 -2.38 -0.01 1.34 16 38 H 0.10 1.26 8.01 -2.39 -0.02 1.24 16 39 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.08 1.97 7.14 -2.39 -0.02 1.96 16 41 H 0.04 1.47 7.94 -2.39 -0.02 1.45 16 42 H 0.03 1.20 3.00 -2.39 -0.01 1.20 16 43 H 0.06 1.96 6.00 -2.38 -0.01 1.94 16 44 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 45 H 0.06 2.30 5.99 -2.39 -0.01 2.29 16 46 H 0.04 1.81 7.99 -2.39 -0.02 1.79 16 Total: -1.00 -77.11 359.70 3.65 -73.46 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 0.92 Total: 9.10 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 6.19 Total: 12.31 kcal Atomic # 7 Polarization: -103.35 SS G_CDS: -4.19 Total: -107.54 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -0.98 Total: -35.99 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.71 Total: 48.65 kcal Total: -77.11 3.65 -73.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189231230.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.406 kcal (2) G-P(sol) polarization free energy of solvation -77.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds