Wall clock time and date at job start Tue Mar 31 2020 03:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 113.99940 * 2 1 4 4 C 1.53002 * 109.46693 * 179.97438 * 3 2 1 5 5 C 1.52998 * 115.55443 * 294.96015 * 4 3 2 6 6 C 1.50703 * 109.46795 * 279.68105 * 5 4 3 7 7 O 1.21276 * 120.00336 * 357.20728 * 6 5 4 8 8 N 1.34777 * 119.99386 * 177.20182 * 6 5 4 9 9 C 1.47013 * 125.65201 * 0.03007 * 8 6 5 10 10 C 1.54332 * 107.40484 * 178.82461 * 9 8 6 11 11 C 1.55397 * 102.82440 * 337.97817 * 10 9 8 12 12 H 1.09004 * 110.89239 * 277.26028 * 11 10 9 13 13 N 1.46499 * 111.07342 * 153.48744 * 11 10 9 14 14 C 1.46504 * 119.99630 * 307.65910 * 13 11 10 15 15 C 1.36936 * 120.00537 * 127.65975 * 13 11 10 16 16 H 1.07999 * 119.99980 * 22.31909 * 15 13 11 17 17 C 1.38814 * 119.99998 * 202.32185 * 15 13 11 18 18 N 1.31611 * 120.00168 * 15.03737 * 17 15 13 19 19 Si 1.86800 * 119.99817 * 195.03112 * 17 15 13 20 20 H 1.48499 * 109.47006 * 90.00252 * 19 17 15 21 21 H 1.48500 * 109.46976 * 210.00501 * 19 17 15 22 22 H 1.48505 * 109.47192 * 330.00206 * 19 17 15 23 23 C 1.47429 * 125.64303 * 179.97438 * 8 6 5 24 24 C 1.53003 * 117.51412 * 80.66432 * 4 3 2 25 25 C 1.52998 * 60.00267 * 107.47829 * 24 4 3 26 26 H 1.09011 * 109.46794 * 300.00174 * 1 2 3 27 27 H 1.08993 * 109.46971 * 59.99702 * 1 2 3 28 28 H 1.08987 * 109.47086 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46675 * 60.00531 * 3 2 1 30 30 H 1.08994 * 109.47205 * 299.99689 * 3 2 1 31 31 H 1.09002 * 109.47136 * 159.68652 * 5 4 3 32 32 H 1.08997 * 109.46971 * 39.67923 * 5 4 3 33 33 H 1.08999 * 109.88547 * 298.31789 * 9 8 6 34 34 H 1.08998 * 109.88649 * 59.33200 * 9 8 6 35 35 H 1.09000 * 110.71638 * 96.24016 * 10 9 8 36 36 H 1.08991 * 110.72319 * 219.52101 * 10 9 8 37 37 H 1.09009 * 109.46919 * 95.18534 * 14 13 11 38 38 H 1.08999 * 109.47008 * 215.17777 * 14 13 11 39 39 H 1.08997 * 109.47317 * 335.18380 * 14 13 11 40 40 H 0.96999 * 120.00119 * 180.02562 * 18 17 15 41 41 H 1.09003 * 110.36657 * 322.99919 * 23 8 6 42 42 H 1.08994 * 110.37005 * 85.32728 * 23 8 6 43 43 H 1.09007 * 117.49649 * 214.96594 * 24 4 3 44 44 H 1.09000 * 117.50237 * 359.97438 * 24 4 3 45 45 H 1.09003 * 117.49543 * 252.51193 * 25 24 4 46 46 H 1.09000 * 117.50201 * 107.48822 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1469 0.5521 1.2524 6 6 4.2293 1.5840 2.3476 7 8 3.8849 2.7266 2.1314 8 7 4.6857 1.2371 3.5673 9 6 5.1346 -0.1054 3.9643 10 6 5.5948 -0.0221 5.4350 11 6 5.9064 1.4898 5.6139 12 1 6.9050 1.7269 5.2468 13 7 5.7540 1.8971 7.0128 14 6 4.5145 1.5946 7.7329 15 6 6.7699 2.5606 7.6474 16 1 7.5083 3.0969 7.0698 17 6 6.8508 2.5439 9.0331 18 7 6.1503 1.6688 9.7227 19 14 7.9542 3.7634 9.9190 20 1 7.1837 4.9950 10.2268 21 1 8.4461 3.1584 11.1828 22 1 9.1098 4.1063 9.0516 23 6 4.8187 2.1414 4.7241 24 6 4.2232 0.9091 -1.3380 25 6 4.3322 2.2919 -0.6924 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0275 0.0005 29 1 1.6886 1.8464 0.8901 30 1 1.6887 1.8464 -0.8900 31 1 5.1473 0.1855 1.0226 32 1 3.5223 -0.2783 1.5819 33 1 4.3111 -0.8137 3.8732 34 1 5.9656 -0.4202 3.3332 35 1 4.7952 -0.3327 6.1075 36 1 6.4894 -0.6241 5.5938 37 1 4.6359 0.6661 8.2909 38 1 4.2882 2.4067 8.4237 39 1 3.6973 1.4858 7.0198 40 1 6.2065 1.6573 10.6909 41 1 5.1385 3.1309 4.3973 42 1 3.8748 2.2063 5.2653 43 1 5.1113 0.2771 -1.3269 44 1 3.5891 0.8135 -2.2194 45 1 3.7696 3.1062 -1.1491 46 1 5.2918 2.5697 -0.2565 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190067466.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:49 Heat of formation + Delta-G solvation = -26.335313 kcal Electronic energy + Delta-G solvation = -24634.343178 eV Core-core repulsion = 21139.996364 eV Total energy + Delta-G solvation = -3494.346814 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.07066 -38.67996 -37.36498 -36.49082 -34.77548 -31.74266 -30.09603 -29.45956 -28.27656 -27.35095 -26.05112 -25.63115 -23.52114 -22.49824 -22.26886 -20.01477 -19.28530 -18.52040 -17.05691 -16.82091 -16.44448 -16.19506 -16.02106 -15.63703 -14.92380 -14.69538 -14.41994 -14.07033 -13.64066 -13.38673 -13.31148 -12.71500 -12.50613 -12.48522 -12.45190 -12.07823 -11.84329 -11.82279 -11.55261 -11.32003 -11.18907 -10.95457 -10.79981 -10.51013 -10.49685 -10.44193 -10.24423 -10.13128 -9.89492 -9.85372 -9.81387 -9.40014 -8.60164 -8.28785 -6.82449 -5.77717 -3.24112 2.89240 3.14154 3.37105 3.42666 3.44296 3.45972 3.93228 4.46158 4.52672 4.60762 4.73402 4.82921 5.02204 5.05042 5.08551 5.16588 5.28481 5.31458 5.34997 5.43753 5.45041 5.53431 5.55033 5.58137 5.67748 5.75893 5.80259 5.86366 5.90510 5.96609 6.03618 6.05161 6.31683 6.40520 6.57675 6.65712 6.75795 6.88156 6.97401 7.31908 7.66989 7.77210 7.85429 8.33193 8.44692 9.17408 9.80226 10.28672 11.26906 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.028222 B = 0.003056 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.881652 B = 9159.036038 C = 9505.091131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.101 3.899 4 C -0.107 4.107 5 C -0.097 4.097 6 C 0.524 3.476 7 O -0.543 6.543 8 N -0.615 5.615 9 C 0.102 3.898 10 C -0.151 4.151 11 C 0.173 3.827 12 H 0.077 0.923 13 N -0.585 5.585 14 C 0.159 3.841 15 C -0.261 4.261 16 H 0.070 0.930 17 C 0.005 3.995 18 N -0.904 5.904 19 Si 0.906 3.094 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.086 3.914 24 C -0.169 4.169 25 C -0.144 4.144 26 H 0.041 0.959 27 H 0.038 0.962 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.034 0.966 38 H 0.041 0.959 39 H 0.002 0.998 40 H 0.253 0.747 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.031 -5.443 -19.451 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C 0.024 3.976 4 C -0.108 4.108 5 C -0.137 4.137 6 C 0.313 3.687 7 O -0.421 6.421 8 N -0.349 5.349 9 C -0.021 4.021 10 C -0.191 4.191 11 C 0.062 3.938 12 H 0.095 0.905 13 N -0.305 5.305 14 C 0.015 3.985 15 C -0.390 4.390 16 H 0.088 0.912 17 C -0.194 4.194 18 N -0.548 5.548 19 Si 0.736 3.264 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.204 1.204 23 C -0.038 4.038 24 C -0.206 4.206 25 C -0.181 4.181 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.020 0.980 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.137 -4.992 -19.400 21.265 hybrid contribution 0.287 0.687 0.702 1.023 sum -6.850 -4.306 -18.698 20.374 Atomic orbital electron populations 1.22721 0.81206 1.02619 0.99940 1.87857 1.19394 1.28143 1.95424 1.21952 0.90745 0.84272 1.00599 1.20874 0.92392 1.04686 0.92825 1.21126 1.02498 0.97859 0.92231 1.20254 0.77119 0.89324 0.82027 1.90669 1.49163 1.20934 1.81315 1.48533 1.63580 1.11952 1.10876 1.22047 0.98557 0.84077 0.97442 1.23246 1.01955 1.00891 0.93009 1.21454 0.95924 0.90374 0.86017 0.90466 1.43819 1.14698 1.65802 1.06215 1.20803 0.84419 1.00464 0.92828 1.19231 1.06086 1.24247 0.89457 0.91210 1.24998 0.99203 0.98223 0.96968 1.70075 1.44211 1.34493 1.06037 0.86235 0.80158 0.80879 0.79142 1.21426 1.21751 1.20425 1.22977 1.01043 0.94002 0.85824 1.23113 1.02436 0.99693 0.95403 1.22877 1.01568 0.91711 1.01963 0.94058 0.94291 0.89666 0.92217 0.93279 0.88937 0.88178 0.92085 0.91949 0.90543 0.90495 0.94812 0.94007 0.97980 0.93667 0.91092 0.91623 0.88627 0.88695 0.88741 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.49 10.44 -35.23 -0.37 -4.86 16 3 C 0.10 1.16 5.75 37.16 0.21 1.38 16 4 C -0.11 -1.23 1.28 -154.50 -0.20 -1.43 16 5 C -0.10 -1.16 4.81 -27.88 -0.13 -1.30 16 6 C 0.52 8.21 7.75 -10.98 -0.09 8.13 16 7 O -0.54 -10.14 15.36 5.56 0.09 -10.06 16 8 N -0.62 -9.82 3.33 -170.52 -0.57 -10.38 16 9 C 0.10 1.38 6.48 -3.06 -0.02 1.36 16 10 C -0.15 -2.50 6.53 -24.76 -0.16 -2.66 16 11 C 0.17 3.43 3.53 -65.65 -0.23 3.20 16 12 H 0.08 1.55 7.96 -51.93 -0.41 1.14 16 13 N -0.59 -14.23 2.96 -170.88 -0.51 -14.73 16 14 C 0.16 3.81 7.58 59.85 0.45 4.26 16 15 C -0.26 -7.02 9.60 -15.06 -0.14 -7.17 16 16 H 0.07 1.84 7.87 -52.49 -0.41 1.43 16 17 C 0.00 0.13 5.06 -17.43 -0.09 0.05 16 18 N -0.90 -25.81 10.79 55.49 0.60 -25.21 16 19 Si 0.91 21.61 29.58 -169.99 -5.03 16.58 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 C 0.09 1.60 6.47 -2.53 -0.02 1.59 16 24 C -0.17 -1.59 9.90 -26.73 -0.26 -1.85 16 25 C -0.14 -1.57 8.95 -26.73 -0.24 -1.81 16 26 H 0.04 0.34 8.14 -51.92 -0.42 -0.08 16 27 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 0.59 8.14 -51.94 -0.42 0.17 16 29 H 0.06 0.79 7.94 -51.93 -0.41 0.37 16 30 H 0.05 0.50 8.09 -51.93 -0.42 0.08 16 31 H 0.09 0.95 7.95 -51.93 -0.41 0.53 16 32 H 0.10 1.16 7.89 -51.93 -0.41 0.75 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.35 7.01 -51.93 -0.36 0.98 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.03 0.87 7.35 -51.92 -0.38 0.48 16 38 H 0.04 1.08 7.35 -51.93 -0.38 0.70 16 39 H 0.00 0.04 6.39 -51.93 -0.33 -0.29 16 40 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.07 1.41 8.04 -51.93 -0.42 0.99 16 42 H 0.07 1.30 6.43 -51.93 -0.33 0.97 16 43 H 0.10 0.80 8.08 -51.92 -0.42 0.38 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 368.40 15.07 5.55 5.55 Total: -1.00 -30.86 368.40 -8.09 -38.94 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -8.05 Total: -0.97 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 0.20 Total: 5.14 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.47 Total: -50.33 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.28 Total: -14.92 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.86 -8.09 -38.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190067466.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.610 kcal (2) G-P(sol) polarization free energy of solvation -30.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds