Wall clock time and date at job start Tue Mar 31 2020 03:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36939 * 119.99829 * 2 1 4 4 H 1.08006 * 119.99861 * 161.16261 * 3 2 1 5 5 C 1.38811 * 120.00210 * 340.88715 * 3 2 1 6 6 N 1.31620 * 119.99947 * 346.74236 * 5 3 2 7 7 Si 1.86793 * 120.00102 * 166.74076 * 5 3 2 8 8 H 1.48493 * 109.47373 * 90.00013 * 7 5 3 9 9 H 1.48498 * 109.47240 * 210.00402 * 7 5 3 10 10 H 1.48506 * 109.47174 * 330.00041 * 7 5 3 11 11 C 1.46496 * 119.99966 * 179.97438 * 2 1 3 12 12 H 1.09006 * 110.63880 * 183.14698 * 11 2 1 13 13 C 1.55161 * 110.72063 * 306.48046 * 11 2 1 14 14 C 1.54909 * 101.57932 * 153.86722 * 13 11 2 15 15 N 1.47427 * 104.83266 * 322.98681 * 14 13 11 16 16 C 1.34773 * 125.64662 * 204.09455 * 15 14 13 17 17 O 1.21286 * 119.99848 * 180.02562 * 16 15 14 18 18 C 1.50700 * 120.00361 * 0.04237 * 16 15 14 19 19 C 1.52997 * 109.47134 * 180.02562 * 18 16 15 20 20 O 1.42901 * 109.47259 * 180.02562 * 19 18 16 21 21 C 1.42890 * 114.00399 * 180.02562 * 20 19 18 22 22 C 1.53001 * 109.47381 * 179.97438 * 21 20 19 23 23 C 1.53003 * 117.49878 * 243.61962 * 22 21 20 24 24 C 1.52996 * 60.00211 * 252.50994 * 23 22 21 25 25 C 1.47017 * 108.70099 * 24.13320 * 15 14 13 26 26 H 1.08999 * 109.46781 * 84.81706 * 1 2 3 27 27 H 1.08999 * 109.46797 * 204.81691 * 1 2 3 28 28 H 1.08999 * 109.46740 * 324.82068 * 1 2 3 29 29 H 0.96995 * 120.00579 * 179.97438 * 6 5 3 30 30 H 1.09000 * 111.00040 * 271.94096 * 13 11 2 31 31 H 1.08993 * 111.00357 * 35.79243 * 13 11 2 32 32 H 1.09003 * 110.36028 * 204.15384 * 14 13 11 33 33 H 1.08997 * 110.45957 * 81.88023 * 14 13 11 34 34 H 1.08998 * 109.46945 * 300.00291 * 18 16 15 35 35 H 1.08998 * 109.46807 * 60.00333 * 18 16 15 36 36 H 1.09000 * 109.46941 * 300.00177 * 19 18 16 37 37 H 1.08992 * 109.47303 * 60.00129 * 19 18 16 38 38 H 1.09007 * 109.47231 * 299.99887 * 21 20 19 39 39 H 1.09003 * 109.47485 * 59.99570 * 21 20 19 40 40 H 1.09001 * 115.54865 * 29.32752 * 22 21 20 41 41 H 1.09002 * 117.49555 * 0.02562 * 23 22 21 42 42 H 1.08997 * 117.49826 * 145.01480 * 23 22 21 43 43 H 1.08995 * 117.50109 * 252.51179 * 24 23 22 44 44 H 1.09003 * 117.50056 * 107.48615 * 24 23 22 45 45 H 1.09000 * 109.88222 * 239.52222 * 25 15 14 46 46 H 1.09002 * 110.01173 * 118.42424 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1864 1.2110 0.3020 5 6 1.5131 2.3550 -0.3936 6 7 0.3510 2.2964 -1.0089 7 14 2.3055 4.0112 -0.0501 8 1 3.1723 4.3921 -1.1940 9 1 1.2479 5.0375 0.1328 10 1 3.1262 3.9208 1.1843 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0921 0.0565 13 6 1.7248 -2.1750 1.1679 14 6 2.0499 -3.5860 0.6173 15 7 1.7501 -3.5071 -0.8240 16 6 1.4407 -4.5496 -1.6201 17 8 1.2120 -4.3668 -2.7971 18 6 1.3784 -5.9423 -1.0478 19 6 1.0099 -6.9324 -2.1545 20 8 0.9503 -8.2530 -1.6118 21 6 0.6124 -9.2597 -2.5679 22 6 0.5784 -10.6258 -1.8798 23 6 1.5953 -11.6731 -2.3380 24 6 0.1195 -11.8249 -2.7121 25 6 1.8456 -2.1030 -1.2491 26 1 -0.3633 0.0928 -1.0235 27 1 -0.3633 -0.9328 0.4313 28 1 -0.3633 0.8400 0.5921 29 1 -0.0941 3.1132 -1.2836 30 1 2.2915 -1.9698 2.0760 31 1 0.6550 -2.0608 1.3426 32 1 1.4183 -4.3346 1.0957 33 1 3.1024 -3.8227 0.7736 34 1 2.3503 -6.2080 -0.6319 35 1 0.6244 -5.9786 -0.2615 36 1 0.0382 -6.6668 -2.5708 37 1 1.7641 -6.8960 -2.9405 38 1 -0.3673 -9.0424 -2.9935 39 1 1.3589 -9.2718 -3.3621 40 1 0.3091 -10.6136 -0.8236 41 1 2.2887 -11.3887 -3.1295 42 1 1.9954 -12.3501 -1.5833 43 1 -0.4513 -12.6016 -2.2034 44 1 -0.1582 -11.6404 -3.7499 45 1 0.8902 -1.7736 -1.6576 46 1 2.6276 -1.9930 -2.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190146329.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:29 Heat of formation + Delta-G solvation = -29.385113 kcal Electronic energy + Delta-G solvation = -23660.551340 eV Core-core repulsion = 20166.072277 eV Total energy + Delta-G solvation = -3494.479063 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.86654 -38.67612 -37.54521 -36.73182 -34.81420 -32.12913 -31.33100 -29.70725 -28.08618 -27.08372 -26.06804 -24.31046 -22.78322 -22.62080 -22.33266 -21.00331 -19.26333 -18.90536 -17.47065 -17.09097 -16.61350 -16.36368 -15.84445 -15.51564 -15.08220 -14.91372 -14.61993 -14.04855 -13.63537 -13.47530 -13.30985 -13.16949 -12.61473 -12.42662 -12.17624 -11.96586 -11.87091 -11.72986 -11.66908 -11.49804 -11.25351 -10.92945 -10.82003 -10.79722 -10.58308 -10.51979 -10.43790 -10.29861 -9.90898 -9.82230 -9.71673 -9.64946 -8.58609 -8.32215 -6.87593 -5.76997 -3.21713 2.80868 2.91271 3.35528 3.36864 3.42776 3.44370 3.66156 4.42885 4.45340 4.51464 4.61415 4.69236 4.90255 4.96160 4.99049 5.02609 5.18520 5.24682 5.25770 5.29708 5.32361 5.40171 5.49551 5.51922 5.59938 5.65187 5.70922 5.72293 5.80270 5.84492 5.88236 5.98463 6.32254 6.35596 6.51464 6.65395 6.81621 6.85150 6.98354 7.36843 7.69136 7.78232 7.79351 8.30941 8.36303 9.17354 9.80172 10.27324 11.27666 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.048602 B = 0.002249 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.969031 B =12446.868991 C =12627.943227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.587 5.587 3 C -0.260 4.260 4 H 0.072 0.928 5 C 0.001 3.999 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.280 1.280 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.100 3.900 15 N -0.611 5.611 16 C 0.526 3.474 17 O -0.549 6.549 18 C -0.133 4.133 19 C 0.079 3.921 20 O -0.389 6.389 21 C 0.095 3.905 22 C -0.153 4.153 23 C -0.178 4.178 24 C -0.175 4.175 25 C 0.086 3.914 26 H 0.029 0.971 27 H 0.001 0.999 28 H 0.048 0.952 29 H 0.253 0.747 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.072 0.928 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.351 -23.687 1.706 23.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.308 5.308 3 C -0.389 4.389 4 H 0.090 0.910 5 C -0.197 4.197 6 N -0.551 5.551 7 Si 0.738 3.262 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.205 1.205 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.194 4.194 14 C -0.023 4.023 15 N -0.345 5.345 16 C 0.315 3.685 17 O -0.428 6.428 18 C -0.173 4.173 19 C 0.002 3.998 20 O -0.309 6.309 21 C 0.018 3.982 22 C -0.171 4.171 23 C -0.215 4.215 24 C -0.212 4.212 25 C -0.039 4.039 26 H 0.047 0.953 27 H 0.020 0.980 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.132 0.868 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.091 0.909 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.117 -23.480 1.166 23.536 hybrid contribution 0.293 0.992 -0.173 1.049 sum 1.410 -22.488 0.993 22.554 Atomic orbital electron populations 1.20832 0.82234 0.95666 0.99593 1.43968 1.02030 0.99904 1.84854 1.19250 0.96304 0.84573 1.38761 0.91014 1.24998 0.97556 0.98503 0.98635 1.70099 1.16796 1.26780 1.41422 0.86214 0.78243 0.83720 0.78073 1.21424 1.21577 1.20509 1.21345 0.96371 0.85934 0.90138 0.90341 1.23350 1.02892 0.93179 0.99951 1.22355 1.00219 0.99188 0.80561 1.48549 1.67923 1.07969 1.10072 1.19988 0.77015 0.85609 0.85936 1.90709 1.50318 1.85584 1.16180 1.21424 1.04883 0.91266 0.99757 1.22122 1.01414 0.81057 0.95191 1.87779 1.91352 1.15700 1.36070 1.21970 0.99322 0.86184 0.90717 1.22154 1.05081 0.89286 1.00607 1.23078 0.92371 1.02416 1.03645 1.22979 0.97718 0.99730 1.00774 1.22952 1.02331 0.78587 1.00028 0.95263 0.98049 0.93297 0.93624 0.90315 0.90319 0.91182 0.91483 0.88285 0.88236 0.92332 0.92410 0.92772 0.93118 0.86792 0.88640 0.88598 0.88381 0.88627 0.90921 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.90 7.79 59.85 0.47 4.37 16 2 N -0.59 -14.21 2.94 -171.38 -0.50 -14.71 16 3 C -0.26 -6.92 9.67 -15.06 -0.15 -7.07 16 4 H 0.07 1.84 7.80 -52.48 -0.41 1.44 16 5 C 0.00 0.04 5.11 -17.43 -0.09 -0.05 16 6 N -0.91 -26.18 10.50 55.49 0.58 -25.60 16 7 Si 0.91 21.53 29.57 -169.99 -5.03 16.50 16 8 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 11 C 0.17 3.35 3.45 -66.10 -0.23 3.12 16 12 H 0.08 1.49 7.90 -51.93 -0.41 1.08 16 13 C -0.15 -2.35 6.59 -24.58 -0.16 -2.52 16 14 C 0.10 1.27 6.69 -2.53 -0.02 1.25 16 15 N -0.61 -9.84 3.33 -170.52 -0.57 -10.40 16 16 C 0.53 8.45 7.85 -10.99 -0.09 8.37 16 17 O -0.55 -10.94 16.31 5.55 0.09 -10.85 16 18 C -0.13 -1.57 5.08 -27.88 -0.14 -1.71 16 19 C 0.08 0.94 5.23 37.16 0.19 1.14 16 20 O -0.39 -4.46 10.34 -35.23 -0.36 -4.83 16 21 C 0.09 0.88 6.22 37.16 0.23 1.11 16 22 C -0.15 -1.23 6.06 -90.62 -0.55 -1.78 16 23 C -0.18 -1.21 10.18 -26.73 -0.27 -1.48 16 24 C -0.17 -1.10 10.25 -26.73 -0.27 -1.38 16 25 C 0.09 1.66 6.51 -3.07 -0.02 1.64 16 26 H 0.03 0.78 7.38 -51.93 -0.38 0.40 16 27 H 0.00 0.02 6.03 -51.93 -0.31 -0.29 16 28 H 0.05 1.28 7.08 -51.93 -0.37 0.91 16 29 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.08 1.29 6.05 -51.93 -0.31 0.98 16 32 H 0.07 0.73 7.48 -51.93 -0.39 0.34 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.10 1.04 7.85 -51.93 -0.41 0.63 16 36 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.44 7.87 -51.93 -0.41 0.03 16 40 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.10 0.62 8.03 -51.93 -0.42 0.20 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 1.63 7.13 -51.93 -0.37 1.26 16 46 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 369.36 15.07 5.57 5.57 Total: -1.00 -31.41 369.36 -9.29 -40.70 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.97 Total: -1.39 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -1.09 Total: 5.02 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.49 Total: -50.71 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.27 Total: -15.67 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.41 -9.29 -40.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190146329.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.311 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds