Wall clock time and date at job start Tue Mar 31 2020 03:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36939 * 119.99829 * 2 1 4 4 H 1.08006 * 119.99861 * 161.16261 * 3 2 1 5 5 C 1.38811 * 120.00210 * 340.88715 * 3 2 1 6 6 N 1.31620 * 119.99947 * 346.74236 * 5 3 2 7 7 Si 1.86793 * 120.00102 * 166.74076 * 5 3 2 8 8 H 1.48493 * 109.47373 * 90.00013 * 7 5 3 9 9 H 1.48498 * 109.47240 * 210.00402 * 7 5 3 10 10 H 1.48506 * 109.47174 * 330.00041 * 7 5 3 11 11 C 1.46496 * 119.99966 * 179.97438 * 2 1 3 12 12 H 1.09006 * 110.63880 * 183.14698 * 11 2 1 13 13 C 1.55161 * 110.72063 * 306.48046 * 11 2 1 14 14 C 1.54909 * 101.57932 * 153.86722 * 13 11 2 15 15 N 1.47427 * 104.83266 * 322.98681 * 14 13 11 16 16 C 1.34773 * 125.64662 * 204.09455 * 15 14 13 17 17 O 1.21286 * 119.99848 * 180.02562 * 16 15 14 18 18 C 1.50700 * 120.00361 * 0.04237 * 16 15 14 19 19 C 1.52997 * 109.47134 * 180.02562 * 18 16 15 20 20 O 1.42901 * 109.47259 * 180.02562 * 19 18 16 21 21 C 1.42890 * 114.00399 * 180.02562 * 20 19 18 22 22 C 1.53001 * 109.47381 * 179.97438 * 21 20 19 23 23 C 1.53003 * 117.49878 * 243.61962 * 22 21 20 24 24 C 1.52996 * 60.00211 * 252.50994 * 23 22 21 25 25 C 1.47017 * 108.70099 * 24.13320 * 15 14 13 26 26 H 1.08999 * 109.46781 * 84.81706 * 1 2 3 27 27 H 1.08999 * 109.46797 * 204.81691 * 1 2 3 28 28 H 1.08999 * 109.46740 * 324.82068 * 1 2 3 29 29 H 0.96995 * 120.00579 * 179.97438 * 6 5 3 30 30 H 1.09000 * 111.00040 * 271.94096 * 13 11 2 31 31 H 1.08993 * 111.00357 * 35.79243 * 13 11 2 32 32 H 1.09003 * 110.36028 * 204.15384 * 14 13 11 33 33 H 1.08997 * 110.45957 * 81.88023 * 14 13 11 34 34 H 1.08998 * 109.46945 * 300.00291 * 18 16 15 35 35 H 1.08998 * 109.46807 * 60.00333 * 18 16 15 36 36 H 1.09000 * 109.46941 * 300.00177 * 19 18 16 37 37 H 1.08992 * 109.47303 * 60.00129 * 19 18 16 38 38 H 1.09007 * 109.47231 * 299.99887 * 21 20 19 39 39 H 1.09003 * 109.47485 * 59.99570 * 21 20 19 40 40 H 1.09001 * 115.54865 * 29.32752 * 22 21 20 41 41 H 1.09002 * 117.49555 * 0.02562 * 23 22 21 42 42 H 1.08997 * 117.49826 * 145.01480 * 23 22 21 43 43 H 1.08995 * 117.50109 * 252.51179 * 24 23 22 44 44 H 1.09003 * 117.50056 * 107.48615 * 24 23 22 45 45 H 1.09000 * 109.88222 * 239.52222 * 25 15 14 46 46 H 1.09002 * 110.01173 * 118.42424 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1864 1.2110 0.3020 5 6 1.5131 2.3550 -0.3936 6 7 0.3510 2.2964 -1.0089 7 14 2.3055 4.0112 -0.0501 8 1 3.1723 4.3921 -1.1940 9 1 1.2479 5.0375 0.1328 10 1 3.1262 3.9208 1.1843 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0921 0.0565 13 6 1.7248 -2.1750 1.1679 14 6 2.0499 -3.5860 0.6173 15 7 1.7501 -3.5071 -0.8240 16 6 1.4407 -4.5496 -1.6201 17 8 1.2120 -4.3668 -2.7971 18 6 1.3784 -5.9423 -1.0478 19 6 1.0099 -6.9324 -2.1545 20 8 0.9503 -8.2530 -1.6118 21 6 0.6124 -9.2597 -2.5679 22 6 0.5784 -10.6258 -1.8798 23 6 1.5953 -11.6731 -2.3380 24 6 0.1195 -11.8249 -2.7121 25 6 1.8456 -2.1030 -1.2491 26 1 -0.3633 0.0928 -1.0235 27 1 -0.3633 -0.9328 0.4313 28 1 -0.3633 0.8400 0.5921 29 1 -0.0941 3.1132 -1.2836 30 1 2.2915 -1.9698 2.0760 31 1 0.6550 -2.0608 1.3426 32 1 1.4183 -4.3346 1.0957 33 1 3.1024 -3.8227 0.7736 34 1 2.3503 -6.2080 -0.6319 35 1 0.6244 -5.9786 -0.2615 36 1 0.0382 -6.6668 -2.5708 37 1 1.7641 -6.8960 -2.9405 38 1 -0.3673 -9.0424 -2.9935 39 1 1.3589 -9.2718 -3.3621 40 1 0.3091 -10.6136 -0.8236 41 1 2.2887 -11.3887 -3.1295 42 1 1.9954 -12.3501 -1.5833 43 1 -0.4513 -12.6016 -2.2034 44 1 -0.1582 -11.6404 -3.7499 45 1 0.8902 -1.7736 -1.6576 46 1 2.6276 -1.9930 -2.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190146329.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:28 Heat of formation + Delta-G solvation = -48.416301 kcal Electronic energy + Delta-G solvation = -23661.376594 eV Core-core repulsion = 20166.072277 eV Total energy + Delta-G solvation = -3495.304317 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.17074 -39.50644 -38.89811 -37.47117 -36.56016 -33.63172 -32.69657 -31.16518 -29.48970 -28.10840 -27.89479 -25.67416 -24.18481 -23.54288 -23.23971 -21.63898 -20.87298 -20.10827 -18.97031 -18.51181 -17.70179 -17.37006 -17.20500 -16.64823 -16.30352 -16.12040 -15.76891 -15.25111 -15.04859 -14.84575 -14.49693 -14.34325 -14.19291 -13.86808 -13.60221 -13.28947 -13.13591 -12.74823 -12.60075 -12.56955 -12.45996 -12.40386 -12.36273 -12.18506 -12.10291 -12.01858 -11.78328 -11.40992 -11.34960 -11.17908 -11.00211 -10.63541 -10.49629 -9.67204 -8.86889 -7.83908 -5.30752 1.47919 1.48476 1.55852 1.58297 1.80304 2.49528 2.59653 2.94753 3.28496 3.54695 3.59846 3.80727 3.84981 3.96071 3.97675 4.01858 4.09671 4.28442 4.29200 4.31727 4.36668 4.47108 4.49399 4.50690 4.64858 4.69037 4.77864 4.78609 4.81348 4.82430 4.91191 5.02047 5.05200 5.21799 5.22367 5.24261 5.24796 5.33174 5.44536 5.62815 5.71514 6.14843 6.29013 6.54631 7.07764 7.12608 7.83764 8.26827 9.19623 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.048602 B = 0.002249 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.969031 B =12446.868991 C =12627.943227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.603 5.603 3 C -0.263 4.263 4 H 0.082 0.918 5 C -0.059 4.059 6 N -0.943 5.943 7 Si 0.973 3.027 8 H -0.288 1.288 9 H -0.296 1.296 10 H -0.265 1.265 11 C 0.165 3.835 12 H 0.084 0.916 13 C -0.141 4.141 14 C 0.104 3.896 15 N -0.612 5.612 16 C 0.522 3.478 17 O -0.597 6.597 18 C -0.119 4.119 19 C 0.082 3.918 20 O -0.395 6.395 21 C 0.089 3.911 22 C -0.169 4.169 23 C -0.178 4.178 24 C -0.166 4.166 25 C 0.097 3.903 26 H -0.008 1.008 27 H 0.032 0.968 28 H 0.023 0.977 29 H 0.247 0.753 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.100 0.900 45 H 0.033 0.967 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.692 -26.029 3.754 26.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.325 5.325 3 C -0.393 4.393 4 H 0.099 0.901 5 C -0.254 4.254 6 N -0.590 5.590 7 Si 0.801 3.199 8 H -0.215 1.215 9 H -0.223 1.223 10 H -0.189 1.189 11 C 0.056 3.944 12 H 0.102 0.898 13 C -0.181 4.181 14 C -0.017 4.017 15 N -0.345 5.345 16 C 0.312 3.688 17 O -0.479 6.479 18 C -0.158 4.158 19 C 0.005 3.995 20 O -0.315 6.315 21 C 0.013 3.987 22 C -0.187 4.187 23 C -0.215 4.215 24 C -0.203 4.203 25 C -0.029 4.029 26 H 0.010 0.990 27 H 0.050 0.950 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.120 0.880 31 H 0.086 0.914 32 H 0.125 0.875 33 H 0.115 0.885 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.128 0.872 41 H 0.115 0.885 42 H 0.123 0.877 43 H 0.128 0.872 44 H 0.119 0.881 45 H 0.051 0.949 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.494 -25.880 3.260 26.203 hybrid contribution -0.099 1.615 -0.846 1.826 sum 2.394 -24.265 2.413 24.502 Atomic orbital electron populations 1.20473 0.82821 0.96009 0.97070 1.44167 1.02032 1.01155 1.85102 1.19677 0.96718 0.85632 1.37244 0.90058 1.25819 0.98338 1.01989 0.99209 1.70289 1.18434 1.27000 1.43253 0.85182 0.77132 0.79376 0.78187 1.21518 1.22283 1.18920 1.21586 0.96347 0.84679 0.91812 0.89752 1.23230 1.02357 0.93532 0.98958 1.22616 1.02906 0.98280 0.77940 1.48612 1.67786 1.06340 1.11778 1.20811 0.75611 0.87036 0.85325 1.90691 1.52276 1.86431 1.18524 1.21368 1.07049 0.87691 0.99701 1.22003 1.00581 0.81706 0.95211 1.87755 1.91433 1.15547 1.36735 1.22132 0.99521 0.86339 0.90745 1.22137 1.06869 0.89057 1.00610 1.23165 0.92655 1.01825 1.03810 1.23078 0.97541 0.98799 1.00880 1.22506 0.99569 0.81237 0.99626 0.98964 0.94981 0.95865 0.94377 0.87994 0.91441 0.87519 0.88469 0.85607 0.85987 0.93513 0.93234 0.92602 0.92778 0.87161 0.88520 0.87738 0.87226 0.88123 0.94865 0.93852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.04 7.79 127.77 1.00 10.03 16 2 N -0.60 -29.45 2.94 -696.13 -2.04 -31.49 16 3 C -0.26 -14.07 9.67 84.03 0.81 -13.26 16 4 H 0.08 4.11 7.80 -2.91 -0.02 4.09 16 5 C -0.06 -3.30 5.11 84.86 0.43 -2.86 16 6 N -0.94 -56.54 10.50 21.65 0.23 -56.31 16 7 Si 0.97 44.82 29.57 68.60 2.03 46.85 16 8 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 9 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 10 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 11 C 0.16 6.22 3.45 46.18 0.16 6.38 16 12 H 0.08 3.08 7.90 -2.38 -0.02 3.06 16 13 C -0.14 -3.88 6.59 31.99 0.21 -3.67 16 14 C 0.10 2.18 6.69 86.85 0.58 2.76 16 15 N -0.61 -18.59 3.33 -811.80 -2.70 -21.29 16 16 C 0.52 16.06 7.85 87.66 0.69 16.75 16 17 O -0.60 -24.17 16.31 -3.05 -0.05 -24.22 16 18 C -0.12 -2.43 5.08 29.85 0.15 -2.28 16 19 C 0.08 1.85 5.23 71.98 0.38 2.23 16 20 O -0.39 -8.33 10.34 -148.98 -1.54 -9.87 16 21 C 0.09 1.54 6.22 71.98 0.45 1.99 16 22 C -0.17 -2.43 6.06 -10.79 -0.07 -2.50 16 23 C -0.18 -2.07 10.18 30.59 0.31 -1.76 16 24 C -0.17 -1.78 10.25 30.59 0.31 -1.46 16 25 C 0.10 3.79 6.51 86.73 0.56 4.35 16 26 H -0.01 -0.45 7.38 -2.39 -0.02 -0.47 16 27 H 0.03 1.36 6.03 -2.39 -0.01 1.35 16 28 H 0.02 1.24 7.08 -2.39 -0.02 1.22 16 29 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.07 2.03 6.05 -2.39 -0.01 2.01 16 32 H 0.11 1.57 7.48 -2.39 -0.02 1.56 16 33 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.12 2.02 7.85 -2.39 -0.02 2.00 16 36 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 37 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 38 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.05 0.88 7.87 -2.39 -0.02 0.86 16 40 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.10 1.09 8.03 -2.39 -0.02 1.08 16 42 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.03 1.56 7.13 -2.39 -0.02 1.54 16 46 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -71.46 369.36 2.84 -68.62 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.94 Total: 11.02 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: 5.98 Total: 16.69 kcal Atomic # 7 Polarization: -104.57 SS G_CDS: -4.52 Total: -109.09 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -1.59 Total: -34.09 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -71.46 2.84 -68.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190146329.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.207 kcal (2) G-P(sol) polarization free energy of solvation -71.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds