Wall clock time and date at job start Tue Mar 31 2020 03:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42904 * 109.46703 * 2 1 4 4 C 1.42905 * 113.99619 * 182.82204 * 3 2 1 5 5 H 1.09005 * 109.46760 * 16.62786 * 4 3 2 6 6 C 1.50700 * 109.46876 * 136.62496 * 4 3 2 7 7 O 1.21280 * 120.00028 * 5.00410 * 6 4 3 8 8 N 1.34783 * 119.99654 * 184.99756 * 6 4 3 9 9 C 1.47417 * 125.64851 * 359.69418 * 8 6 4 10 10 C 1.55127 * 104.72143 * 155.81662 * 9 8 6 11 11 C 1.55161 * 101.48587 * 37.29594 * 10 9 8 12 12 H 1.09001 * 110.86976 * 82.76345 * 11 10 9 13 13 N 1.46493 * 110.72052 * 205.96945 * 11 10 9 14 14 C 1.46502 * 120.00333 * 53.52013 * 13 11 10 15 15 C 1.36938 * 120.00227 * 233.52189 * 13 11 10 16 16 H 1.08000 * 119.99675 * 325.33744 * 15 13 11 17 17 C 1.38807 * 120.00424 * 145.33394 * 15 13 11 18 18 N 1.31618 * 120.00479 * 156.33189 * 17 15 13 19 19 Si 1.86803 * 120.00047 * 336.33246 * 17 15 13 20 20 H 1.48502 * 109.46822 * 95.10228 * 19 17 15 21 21 H 1.48497 * 109.47204 * 215.10535 * 19 17 15 22 22 H 1.48500 * 109.47104 * 335.10500 * 19 17 15 23 23 C 1.47017 * 125.64348 * 180.02562 * 8 6 4 24 24 C 1.52998 * 109.46913 * 256.62605 * 4 3 2 25 25 C 1.53002 * 117.50100 * 10.65986 * 24 4 3 26 26 C 1.52994 * 117.50364 * 301.99902 * 24 4 3 27 27 H 1.08993 * 109.47104 * 299.99806 * 1 2 3 28 28 H 1.08998 * 109.47108 * 60.00288 * 1 2 3 29 29 H 1.09001 * 109.47018 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47076 * 240.00035 * 2 1 3 31 31 H 1.08997 * 109.47279 * 120.00236 * 2 1 3 32 32 H 1.08999 * 110.36990 * 274.74498 * 9 8 6 33 33 H 1.09001 * 110.36952 * 37.06792 * 9 8 6 34 34 H 1.09001 * 111.19598 * 279.19060 * 10 9 8 35 35 H 1.09003 * 110.94323 * 155.29115 * 10 9 8 36 36 H 1.09006 * 109.46722 * 88.25921 * 14 13 11 37 37 H 1.08993 * 109.47517 * 208.25813 * 14 13 11 38 38 H 1.09000 * 109.46919 * 328.26436 * 14 13 11 39 39 H 0.96996 * 120.00302 * 180.02562 * 18 17 15 40 40 H 1.09004 * 109.88406 * 300.43484 * 23 8 6 41 41 H 1.08998 * 109.88801 * 61.45336 * 23 8 6 42 42 H 1.09000 * 115.54503 * 156.32363 * 24 4 3 43 43 H 1.09002 * 117.49554 * 0.02562 * 25 24 4 44 44 H 1.08996 * 117.49802 * 145.01824 * 25 24 4 45 45 H 1.09000 * 117.50069 * 214.98137 * 26 24 4 46 46 H 1.09003 * 117.49542 * 359.97273 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4294 1.4607 -0.0643 5 1 3.8548 0.5128 -0.3941 6 6 3.8032 2.5459 -1.0408 7 8 2.9384 3.2226 -1.5557 8 7 5.0987 2.7646 -1.3418 9 6 6.2464 2.0244 -0.7869 10 6 7.3693 2.1875 -1.8447 11 6 7.1378 3.6467 -2.3186 12 1 7.6092 4.3555 -1.6378 13 7 7.6347 3.8333 -3.6840 14 6 7.1867 2.9399 -4.7551 15 6 8.5180 4.8429 -3.9592 16 1 8.4451 5.7828 -3.4321 17 6 9.5070 4.6584 -4.9154 18 7 10.0416 5.6989 -5.5187 19 14 10.0795 2.9332 -5.3462 20 1 9.3364 2.4480 -6.5369 21 1 11.5339 2.9545 -5.6451 22 1 9.8231 2.0257 -4.1991 23 6 5.6014 3.7855 -2.2726 24 6 3.9762 1.8107 1.3211 25 6 3.0103 1.7236 2.5046 26 6 3.4597 3.0903 1.9820 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 6.5530 2.4577 0.1650 33 1 5.9940 0.9714 -0.6616 34 1 7.2406 1.4844 -2.6677 35 1 8.3532 2.0762 -1.3889 36 1 6.2731 3.3350 -5.1995 37 1 7.9616 2.8707 -5.5185 38 1 6.9919 1.9493 -4.3442 39 1 10.7325 5.5699 -6.1872 40 1 5.1845 3.6191 -3.2659 41 1 5.3270 4.7787 -1.9171 42 1 5.0161 1.5367 1.4990 43 1 1.9854 1.4165 2.2961 44 1 3.4149 1.3927 3.4611 45 1 4.1597 3.6581 2.5949 46 1 2.7307 3.6831 1.4295 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190204698.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:06 Heat of formation + Delta-G solvation = -15.433213 kcal Electronic energy + Delta-G solvation = -25164.476947 eV Core-core repulsion = 21670.602884 eV Total energy + Delta-G solvation = -3493.874063 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.37051 -38.66907 -37.21258 -36.29208 -34.95981 -31.94172 -31.56903 -30.29180 -28.98328 -27.37440 -26.16975 -23.76191 -23.20829 -22.56002 -22.44763 -21.10091 -19.50460 -19.19312 -17.29490 -17.00055 -16.92124 -16.47198 -16.06573 -15.39683 -15.10789 -15.03082 -14.33739 -14.09238 -13.73499 -13.18204 -13.13586 -12.98634 -12.74241 -12.57509 -12.49542 -12.35975 -12.15715 -11.91895 -11.74582 -11.54302 -11.42988 -11.38860 -11.01385 -10.91387 -10.70462 -10.55326 -10.52549 -10.22713 -10.02157 -9.97424 -9.61422 -9.29508 -8.58350 -8.40184 -6.97585 -6.05837 -3.45723 2.69102 2.82775 3.26742 3.41983 3.46052 3.48857 3.76160 4.38153 4.46135 4.53888 4.63590 4.77091 4.80281 4.89767 4.92223 5.00908 5.06679 5.10737 5.12050 5.19855 5.36004 5.40768 5.42068 5.51810 5.60536 5.65094 5.70688 5.72074 5.85170 5.86823 5.96242 6.06777 6.07717 6.20306 6.31618 6.38886 6.44897 6.60495 6.68302 6.77260 6.91295 7.69744 7.94434 8.28857 8.34066 8.88200 9.63061 10.00797 11.09495 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.027994 B = 0.003530 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.977345 B = 7930.273274 C = 8152.800573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.353 6.353 4 C 0.109 3.891 5 H 0.088 0.912 6 C 0.526 3.474 7 O -0.526 6.526 8 N -0.609 5.609 9 C 0.100 3.900 10 C -0.158 4.158 11 C 0.173 3.827 12 H 0.089 0.911 13 N -0.596 5.596 14 C 0.106 3.894 15 C -0.275 4.275 16 H 0.082 0.918 17 C 0.036 3.964 18 N -0.896 5.896 19 Si 0.883 3.117 20 H -0.287 1.287 21 H -0.302 1.302 22 H -0.270 1.270 23 C 0.091 3.909 24 C -0.180 4.180 25 C -0.164 4.164 26 C -0.164 4.164 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.018 0.982 37 H 0.048 0.952 38 H 0.033 0.967 39 H 0.264 0.736 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.118 0.882 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.418 -13.924 15.339 24.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.271 6.271 4 C 0.047 3.953 5 H 0.105 0.895 6 C 0.313 3.687 7 O -0.402 6.402 8 N -0.345 5.345 9 C -0.023 4.023 10 C -0.198 4.198 11 C 0.064 3.936 12 H 0.107 0.893 13 N -0.318 5.318 14 C -0.038 4.038 15 C -0.403 4.403 16 H 0.100 0.900 17 C -0.165 4.165 18 N -0.537 5.537 19 Si 0.714 3.286 20 H -0.215 1.215 21 H -0.231 1.231 22 H -0.194 1.194 23 C -0.033 4.033 24 C -0.199 4.199 25 C -0.201 4.201 26 C -0.201 4.201 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.037 0.963 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.136 0.864 43 H 0.120 0.880 44 H 0.111 0.889 45 H 0.113 0.887 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.970 -13.313 14.927 23.839 hybrid contribution 0.723 -1.259 -0.404 1.507 sum -12.247 -14.573 14.523 23.944 Atomic orbital electron populations 1.21724 0.93454 1.02144 1.03411 1.22637 0.95923 0.83638 1.00115 1.88018 1.18518 1.26262 1.94280 1.21272 0.83169 0.97796 0.93070 0.89458 1.20014 0.81293 0.85104 0.82285 1.90711 1.47922 1.48581 1.52939 1.48410 1.04737 1.36614 1.44763 1.22432 0.86523 0.95796 0.97571 1.23443 0.97510 1.00890 0.97949 1.21454 0.90084 0.94054 0.88057 0.89258 1.44011 1.50767 1.35662 1.01334 1.21364 0.98077 0.92650 0.91713 1.18805 1.06929 0.92040 1.22501 0.90002 1.25398 0.96659 0.96738 0.97735 1.69882 1.28681 1.29674 1.25474 0.86876 0.76734 0.86848 0.78156 1.21513 1.23051 1.19437 1.22700 0.97121 0.90538 0.92981 1.22665 0.99550 1.05288 0.92399 1.22924 1.00010 1.00884 0.96251 1.22912 1.03501 0.90560 1.03111 0.91817 0.91598 0.91094 0.93300 0.93080 0.91171 0.91518 0.90655 0.90008 0.96334 0.93423 0.94890 0.92580 0.91164 0.91745 0.86430 0.87969 0.88894 0.88697 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.16 0.38 -0.82 16 2 C 0.05 0.49 6.06 37.16 0.23 0.72 16 3 O -0.35 -4.52 8.00 -55.09 -0.44 -4.96 16 4 C 0.11 1.31 2.37 -27.88 -0.07 1.24 16 5 H 0.09 0.87 7.11 -51.93 -0.37 0.50 16 6 C 0.53 8.46 6.94 -10.98 -0.08 8.38 16 7 O -0.53 -10.76 16.83 -14.30 -0.24 -11.00 16 8 N -0.61 -9.28 3.32 -170.39 -0.57 -9.84 16 9 C 0.10 1.20 5.48 -2.42 -0.01 1.19 16 10 C -0.16 -2.36 6.62 -24.46 -0.16 -2.52 16 11 C 0.17 3.19 3.44 -66.10 -0.23 2.96 16 12 H 0.09 1.66 7.95 -51.93 -0.41 1.24 16 13 N -0.60 -13.63 2.54 -171.39 -0.43 -14.06 16 14 C 0.11 2.29 8.49 59.85 0.51 2.80 16 15 C -0.27 -7.45 9.88 -15.06 -0.15 -7.60 16 16 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 17 C 0.04 1.00 5.29 -17.43 -0.09 0.91 16 18 N -0.90 -26.93 13.97 55.49 0.78 -26.16 16 19 Si 0.88 21.63 25.02 -169.99 -4.25 17.38 16 20 H -0.29 -6.90 6.63 56.52 0.37 -6.52 16 21 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 C 0.09 1.62 6.51 -3.07 -0.02 1.60 16 24 C -0.18 -1.80 5.11 -90.62 -0.46 -2.27 16 25 C -0.16 -1.47 9.88 -26.69 -0.26 -1.73 16 26 C -0.16 -1.76 9.84 -26.70 -0.26 -2.02 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.05 0.38 8.12 -51.93 -0.42 -0.04 16 32 H 0.07 0.73 7.76 -51.93 -0.40 0.33 16 33 H 0.07 0.64 7.33 -51.93 -0.38 0.26 16 34 H 0.07 1.19 6.00 -51.93 -0.31 0.88 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.02 0.39 7.84 -51.93 -0.41 -0.01 16 37 H 0.05 1.11 3.05 -51.93 -0.16 0.95 16 38 H 0.03 0.62 5.99 -51.93 -0.31 0.31 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.07 1.39 6.97 -51.93 -0.36 1.03 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.12 0.98 7.08 -51.93 -0.37 0.61 16 43 H 0.10 0.97 6.77 -51.93 -0.35 0.62 16 44 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 358.27 15.07 5.40 5.40 Total: -1.00 -32.73 358.27 -8.08 -40.81 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -7.64 Total: -0.41 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -0.68 Total: 2.84 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: -0.23 Total: -50.06 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.68 Total: -15.96 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.25 Total: 17.38 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.73 -8.08 -40.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190204698.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.381 kcal (2) G-P(sol) polarization free energy of solvation -32.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds