Wall clock time and date at job start Tue Mar 31 2020 03:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42904 * 109.46703 * 2 1 4 4 C 1.42905 * 113.99619 * 182.82204 * 3 2 1 5 5 H 1.09005 * 109.46760 * 16.62786 * 4 3 2 6 6 C 1.50700 * 109.46876 * 136.62496 * 4 3 2 7 7 O 1.21280 * 120.00028 * 5.00410 * 6 4 3 8 8 N 1.34783 * 119.99654 * 184.99756 * 6 4 3 9 9 C 1.47417 * 125.64851 * 359.69418 * 8 6 4 10 10 C 1.55127 * 104.72143 * 155.81662 * 9 8 6 11 11 C 1.55161 * 101.48587 * 37.29594 * 10 9 8 12 12 H 1.09001 * 110.86976 * 82.76345 * 11 10 9 13 13 N 1.46493 * 110.72052 * 205.96945 * 11 10 9 14 14 C 1.46502 * 120.00333 * 53.52013 * 13 11 10 15 15 C 1.36938 * 120.00227 * 233.52189 * 13 11 10 16 16 H 1.08000 * 119.99675 * 325.33744 * 15 13 11 17 17 C 1.38807 * 120.00424 * 145.33394 * 15 13 11 18 18 N 1.31618 * 120.00479 * 156.33189 * 17 15 13 19 19 Si 1.86803 * 120.00047 * 336.33246 * 17 15 13 20 20 H 1.48502 * 109.46822 * 95.10228 * 19 17 15 21 21 H 1.48497 * 109.47204 * 215.10535 * 19 17 15 22 22 H 1.48500 * 109.47104 * 335.10500 * 19 17 15 23 23 C 1.47017 * 125.64348 * 180.02562 * 8 6 4 24 24 C 1.52998 * 109.46913 * 256.62605 * 4 3 2 25 25 C 1.53002 * 117.50100 * 10.65986 * 24 4 3 26 26 C 1.52994 * 117.50364 * 301.99902 * 24 4 3 27 27 H 1.08993 * 109.47104 * 299.99806 * 1 2 3 28 28 H 1.08998 * 109.47108 * 60.00288 * 1 2 3 29 29 H 1.09001 * 109.47018 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47076 * 240.00035 * 2 1 3 31 31 H 1.08997 * 109.47279 * 120.00236 * 2 1 3 32 32 H 1.08999 * 110.36990 * 274.74498 * 9 8 6 33 33 H 1.09001 * 110.36952 * 37.06792 * 9 8 6 34 34 H 1.09001 * 111.19598 * 279.19060 * 10 9 8 35 35 H 1.09003 * 110.94323 * 155.29115 * 10 9 8 36 36 H 1.09006 * 109.46722 * 88.25921 * 14 13 11 37 37 H 1.08993 * 109.47517 * 208.25813 * 14 13 11 38 38 H 1.09000 * 109.46919 * 328.26436 * 14 13 11 39 39 H 0.96996 * 120.00302 * 180.02562 * 18 17 15 40 40 H 1.09004 * 109.88406 * 300.43484 * 23 8 6 41 41 H 1.08998 * 109.88801 * 61.45336 * 23 8 6 42 42 H 1.09000 * 115.54503 * 156.32363 * 24 4 3 43 43 H 1.09002 * 117.49554 * 0.02562 * 25 24 4 44 44 H 1.08996 * 117.49802 * 145.01824 * 25 24 4 45 45 H 1.09000 * 117.50069 * 214.98137 * 26 24 4 46 46 H 1.09003 * 117.49542 * 359.97273 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4294 1.4607 -0.0643 5 1 3.8548 0.5128 -0.3941 6 6 3.8032 2.5459 -1.0408 7 8 2.9384 3.2226 -1.5557 8 7 5.0987 2.7646 -1.3418 9 6 6.2464 2.0244 -0.7869 10 6 7.3693 2.1875 -1.8447 11 6 7.1378 3.6467 -2.3186 12 1 7.6092 4.3555 -1.6378 13 7 7.6347 3.8333 -3.6840 14 6 7.1867 2.9399 -4.7551 15 6 8.5180 4.8429 -3.9592 16 1 8.4451 5.7828 -3.4321 17 6 9.5070 4.6584 -4.9154 18 7 10.0416 5.6989 -5.5187 19 14 10.0795 2.9332 -5.3462 20 1 9.3364 2.4480 -6.5369 21 1 11.5339 2.9545 -5.6451 22 1 9.8231 2.0257 -4.1991 23 6 5.6014 3.7855 -2.2726 24 6 3.9762 1.8107 1.3211 25 6 3.0103 1.7236 2.5046 26 6 3.4597 3.0903 1.9820 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 6.5530 2.4577 0.1650 33 1 5.9940 0.9714 -0.6616 34 1 7.2406 1.4844 -2.6677 35 1 8.3532 2.0762 -1.3889 36 1 6.2731 3.3350 -5.1995 37 1 7.9616 2.8707 -5.5185 38 1 6.9919 1.9493 -4.3442 39 1 10.7325 5.5699 -6.1872 40 1 5.1845 3.6191 -3.2659 41 1 5.3270 4.7787 -1.9171 42 1 5.0161 1.5367 1.4990 43 1 1.9854 1.4165 2.2961 44 1 3.4149 1.3927 3.4611 45 1 4.1597 3.6581 2.5949 46 1 2.7307 3.6831 1.4295 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190204698.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:05 Heat of formation + Delta-G solvation = -36.307402 kcal Electronic energy + Delta-G solvation = -25165.382120 eV Core-core repulsion = 21670.602884 eV Total energy + Delta-G solvation = -3494.779236 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.49681 -39.77884 -38.55444 -37.10014 -36.58306 -33.83764 -32.39402 -31.68241 -30.16277 -28.56700 -28.01095 -25.26836 -24.11167 -23.80787 -23.18426 -21.96311 -20.98749 -20.37396 -18.99830 -18.22089 -18.02545 -17.64241 -17.38330 -16.59512 -16.52458 -15.79905 -15.76270 -15.11173 -15.05798 -14.90880 -14.64759 -14.36926 -14.06818 -13.93165 -13.46375 -13.42132 -13.25896 -13.19357 -12.99677 -12.57608 -12.41884 -12.39624 -12.33069 -12.28082 -12.14313 -12.03920 -11.64743 -11.59815 -11.43263 -11.26232 -10.83144 -10.67092 -10.37445 -9.67996 -8.88885 -8.21534 -5.58913 1.33269 1.43499 1.51495 1.55691 1.70988 2.42664 2.70613 2.85794 3.01381 3.30557 3.52951 3.62702 3.74308 3.86982 3.96941 4.14602 4.19578 4.21979 4.24522 4.30635 4.34901 4.39152 4.42758 4.49573 4.51320 4.68027 4.70553 4.80513 4.82083 4.83070 4.96152 4.97663 5.00610 5.03334 5.19480 5.20777 5.24365 5.26253 5.34051 5.35450 5.88280 6.11666 6.14790 6.52927 6.90948 7.11571 7.57852 7.98442 8.98052 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.027994 B = 0.003530 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.977345 B = 7930.273274 C = 8152.800573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.382 6.382 4 C 0.114 3.886 5 H 0.119 0.881 6 C 0.519 3.481 7 O -0.584 6.584 8 N -0.606 5.606 9 C 0.104 3.896 10 C -0.147 4.147 11 C 0.167 3.833 12 H 0.083 0.917 13 N -0.608 5.608 14 C 0.106 3.894 15 C -0.267 4.267 16 H 0.043 0.957 17 C -0.023 4.023 18 N -0.949 5.949 19 Si 0.952 3.048 20 H -0.280 1.280 21 H -0.310 1.310 22 H -0.245 1.245 23 C 0.100 3.900 24 C -0.176 4.176 25 C -0.143 4.143 26 C -0.186 4.186 27 H 0.061 0.939 28 H 0.045 0.955 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.013 0.987 37 H 0.033 0.967 38 H 0.068 0.932 39 H 0.264 0.736 40 H 0.046 0.954 41 H 0.044 0.956 42 H 0.147 0.853 43 H 0.095 0.905 44 H 0.120 0.880 45 H 0.106 0.894 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.213 -18.261 17.750 28.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.301 6.301 4 C 0.053 3.947 5 H 0.137 0.863 6 C 0.308 3.692 7 O -0.463 6.463 8 N -0.341 5.341 9 C -0.018 4.018 10 C -0.187 4.187 11 C 0.059 3.941 12 H 0.101 0.899 13 N -0.331 5.331 14 C -0.038 4.038 15 C -0.396 4.396 16 H 0.061 0.939 17 C -0.220 4.220 18 N -0.593 5.593 19 Si 0.781 3.219 20 H -0.208 1.208 21 H -0.239 1.239 22 H -0.168 1.168 23 C -0.025 4.025 24 C -0.194 4.194 25 C -0.179 4.179 26 C -0.223 4.223 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.126 0.874 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.031 0.969 37 H 0.051 0.949 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.165 0.835 43 H 0.113 0.887 44 H 0.138 0.862 45 H 0.124 0.876 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.780 -17.707 17.392 27.917 hybrid contribution 0.514 0.213 -1.128 1.258 sum -12.266 -17.494 16.263 26.852 Atomic orbital electron populations 1.21759 0.93125 1.03454 1.02340 1.22884 0.96318 0.82243 1.01493 1.88011 1.19067 1.28660 1.94358 1.21321 0.83369 0.97087 0.92962 0.86346 1.20972 0.80661 0.85387 0.82150 1.90681 1.49577 1.50912 1.55178 1.48457 1.05661 1.35958 1.44019 1.22696 0.83878 0.97991 0.97222 1.23338 0.99610 0.96965 0.98777 1.21545 0.89714 0.97057 0.85799 0.89928 1.44041 1.50224 1.35204 1.03618 1.21402 0.97145 0.94061 0.91226 1.18684 1.07390 0.92017 1.21506 0.93913 1.26071 0.97046 1.00748 0.98116 1.70024 1.30009 1.32252 1.27015 0.85757 0.75400 0.81909 0.78865 1.20750 1.23882 1.16791 1.22333 0.96811 0.90809 0.92565 1.22790 1.01101 1.04192 0.91356 1.22977 0.99609 0.98502 0.96858 1.22847 1.03827 0.91402 1.04243 0.91984 0.93593 0.88559 0.92825 0.90563 0.88614 0.87379 0.90784 0.88400 0.96890 0.94913 0.91409 0.92711 0.93579 0.93717 0.83532 0.88666 0.86214 0.87565 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 10.28 71.98 0.74 -1.40 16 2 C 0.05 0.72 6.06 71.98 0.44 1.16 16 3 O -0.38 -9.19 8.00 -129.99 -1.04 -10.23 16 4 C 0.11 2.40 2.37 29.85 0.07 2.47 16 5 H 0.12 1.75 7.11 -2.38 -0.02 1.73 16 6 C 0.52 16.12 6.94 87.66 0.61 16.73 16 7 O -0.58 -24.61 16.83 15.96 0.27 -24.34 16 8 N -0.61 -17.28 3.32 -811.37 -2.70 -19.98 16 9 C 0.10 1.99 5.48 86.93 0.48 2.47 16 10 C -0.15 -3.81 6.62 32.06 0.21 -3.60 16 11 C 0.17 5.99 3.44 46.18 0.16 6.15 16 12 H 0.08 3.06 7.95 -2.39 -0.02 3.04 16 13 N -0.61 -27.65 2.54 -696.15 -1.77 -29.42 16 14 C 0.11 4.41 8.49 127.77 1.08 5.49 16 15 C -0.27 -14.86 9.88 84.03 0.83 -14.02 16 16 H 0.04 2.65 8.06 -2.91 -0.02 2.62 16 17 C -0.02 -1.34 5.29 84.86 0.45 -0.89 16 18 N -0.95 -59.01 13.97 21.65 0.30 -58.71 16 19 Si 0.95 44.50 25.02 68.60 1.72 46.21 16 20 H -0.28 -12.65 6.63 99.48 0.66 -11.99 16 21 H -0.31 -14.76 7.11 99.48 0.71 -14.06 16 22 H -0.24 -10.33 7.11 99.48 0.71 -9.62 16 23 C 0.10 3.60 6.51 86.73 0.56 4.17 16 24 C -0.18 -2.83 5.11 -10.80 -0.06 -2.88 16 25 C -0.14 -2.05 9.88 30.62 0.30 -1.75 16 26 C -0.19 -3.70 9.84 30.62 0.30 -3.40 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 0.78 8.08 -2.39 -0.02 0.76 16 31 H 0.08 0.81 8.12 -2.39 -0.02 0.79 16 32 H 0.10 1.45 7.76 -2.39 -0.02 1.43 16 33 H 0.11 1.31 7.33 -2.39 -0.02 1.29 16 34 H 0.07 1.97 6.00 -2.39 -0.01 1.96 16 35 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.01 0.55 7.84 -2.38 -0.02 0.53 16 37 H 0.03 1.47 3.05 -2.39 -0.01 1.46 16 38 H 0.07 2.34 5.99 -2.39 -0.01 2.33 16 39 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 40 H 0.05 1.87 6.97 -2.38 -0.02 1.86 16 41 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.15 1.53 7.08 -2.39 -0.02 1.51 16 43 H 0.09 1.54 6.77 -2.39 -0.02 1.52 16 44 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -76.64 358.27 3.87 -72.76 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.91 Total: 12.99 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 6.18 Total: 10.70 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -4.16 Total: -108.10 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -0.77 Total: -34.57 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.72 Total: 46.21 kcal Total: -76.64 3.87 -72.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190204698.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.456 kcal (2) G-P(sol) polarization free energy of solvation -76.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds