Wall clock time and date at job start Tue Mar 31 2020 03:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47097 * 2 1 4 4 C 1.42898 * 113.99740 * 184.79141 * 3 2 1 5 5 C 1.53003 * 109.47229 * 175.20973 * 4 3 2 6 6 C 1.50701 * 115.55011 * 295.09584 * 5 4 3 7 7 O 1.21287 * 120.00108 * 99.86960 * 6 5 4 8 8 N 1.34779 * 120.00143 * 279.87477 * 6 5 4 9 9 C 1.47297 * 125.78966 * 354.98952 * 8 6 5 10 10 C 1.54323 * 107.30094 * 178.92874 * 9 8 6 11 11 C 1.55156 * 102.94474 * 337.81580 * 10 9 8 12 12 H 1.08998 * 111.00294 * 277.43119 * 11 10 9 13 13 N 1.46502 * 111.03136 * 153.59287 * 11 10 9 14 14 C 1.46494 * 120.00277 * 307.78419 * 13 11 10 15 15 C 1.36938 * 119.99804 * 127.79041 * 13 11 10 16 16 H 1.08001 * 120.00207 * 22.19429 * 15 13 11 17 17 C 1.38811 * 119.99804 * 202.20124 * 15 13 11 18 18 N 1.31616 * 120.00040 * 11.34463 * 17 15 13 19 19 Si 1.86799 * 119.99592 * 191.34522 * 17 15 13 20 20 H 1.48505 * 109.47399 * 60.00030 * 19 17 15 21 21 H 1.48507 * 109.46951 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47479 * 299.99507 * 19 17 15 23 23 C 1.47420 * 125.65249 * 174.99434 * 8 6 5 24 24 C 1.52999 * 117.51951 * 80.79103 * 5 4 3 25 25 C 1.52996 * 117.50211 * 149.42109 * 5 4 3 26 26 H 1.09000 * 109.46909 * 304.91582 * 1 2 3 27 27 H 1.08997 * 109.47332 * 64.91719 * 1 2 3 28 28 H 1.09003 * 109.46854 * 184.91687 * 1 2 3 29 29 H 1.08998 * 109.46915 * 239.99769 * 2 1 3 30 30 H 1.09005 * 109.47171 * 119.99702 * 2 1 3 31 31 H 1.09007 * 109.47659 * 55.21096 * 4 3 2 32 32 H 1.09003 * 109.47470 * 295.20734 * 4 3 2 33 33 H 1.08994 * 109.85268 * 59.50560 * 9 8 6 34 34 H 1.08998 * 109.87428 * 298.36275 * 9 8 6 35 35 H 1.09005 * 110.71483 * 219.45168 * 10 9 8 36 36 H 1.08997 * 110.72032 * 96.18641 * 10 9 8 37 37 H 1.08995 * 109.47249 * 94.06885 * 14 13 11 38 38 H 1.09003 * 109.47246 * 214.06804 * 14 13 11 39 39 H 1.09005 * 109.46985 * 334.06550 * 14 13 11 40 40 H 0.97003 * 119.99544 * 180.02562 * 18 17 15 41 41 H 1.09004 * 110.36880 * 85.25612 * 23 8 6 42 42 H 1.09000 * 110.36695 * 323.04981 * 23 8 6 43 43 H 1.09001 * 117.50180 * 214.97554 * 24 5 4 44 44 H 1.09006 * 117.49674 * 359.97438 * 24 5 4 45 45 H 1.08996 * 117.50186 * 359.97438 * 25 5 4 46 46 H 1.09000 * 117.49678 * 144.99789 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4266 1.4616 -0.1090 5 6 3.8125 2.9380 -0.2192 6 6 3.3313 3.6448 -1.4602 7 8 2.3427 4.3460 -1.4140 8 7 3.9994 3.4976 -2.6214 9 6 5.2654 2.7663 -2.8001 10 6 5.6331 2.8443 -4.2969 11 6 4.2677 3.1309 -4.9758 12 1 3.7026 2.2102 -5.1206 13 7 4.4502 3.8372 -6.2462 14 6 5.2570 5.0590 -6.2958 15 6 3.8665 3.3554 -7.3875 16 1 3.0103 2.7005 -7.3210 17 6 4.3755 3.7086 -8.6297 18 7 5.5398 4.3164 -8.7152 19 14 3.4079 3.3212 -10.1798 20 1 2.0903 4.0041 -10.1246 21 1 4.1626 3.7981 -11.3666 22 1 3.2012 1.8542 -10.2808 23 6 3.5842 4.0428 -3.9267 24 6 3.8777 3.7502 1.0758 25 6 5.1678 3.3586 0.3527 26 1 -0.3633 0.5882 0.8427 27 1 -0.3634 0.4356 -0.9307 28 1 -0.3633 -1.0239 0.0881 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.7668 0.9299 -0.9977 32 1 3.8949 1.0286 0.7749 33 1 5.1366 1.7253 -2.5038 34 1 6.0490 3.2301 -2.2011 35 1 6.0444 1.8959 -4.6428 36 1 6.3335 3.6592 -4.4799 37 1 6.2811 4.8072 -6.5710 38 1 4.8389 5.7407 -7.0365 39 1 5.2511 5.5382 -5.3168 40 1 5.8952 4.5635 -9.5833 41 1 3.9292 5.0710 -4.0354 42 1 2.5002 3.9942 -4.0306 43 1 3.5725 4.7956 1.0302 44 1 3.6452 3.2327 2.0066 45 1 5.7845 2.5836 0.8077 46 1 5.7115 4.1464 -0.1688 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191010368.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:09 Heat of formation + Delta-G solvation = -24.837484 kcal Electronic energy + Delta-G solvation = -24978.509082 eV Core-core repulsion = 21484.227219 eV Total energy + Delta-G solvation = -3494.281863 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.23311 -38.34022 -37.41499 -36.24277 -34.76752 -31.58588 -31.47405 -29.73612 -28.14479 -27.11886 -26.05775 -24.35539 -23.03832 -22.63682 -22.32590 -21.57722 -19.29252 -18.58685 -17.18826 -17.02897 -16.44683 -16.16676 -15.94624 -15.35789 -15.20806 -14.52358 -14.06220 -13.66916 -13.47519 -13.44125 -13.33269 -12.84094 -12.67821 -12.47253 -12.45102 -11.99258 -11.90534 -11.69593 -11.64952 -11.36455 -11.32574 -10.93240 -10.82636 -10.72340 -10.49439 -10.46890 -10.37726 -10.26666 -9.88872 -9.86037 -9.77477 -9.43915 -8.59058 -8.28733 -6.82176 -5.76906 -3.23666 2.82320 3.05423 3.26581 3.37666 3.43062 3.44764 3.82578 4.42669 4.46474 4.55765 4.70365 4.80420 4.87735 5.01529 5.05084 5.15896 5.18530 5.26517 5.34684 5.37483 5.41105 5.50194 5.53529 5.57387 5.68298 5.72787 5.75653 5.80758 5.91659 5.93977 5.98116 6.04078 6.32333 6.40015 6.57404 6.66072 6.78103 6.88161 7.04817 7.36734 7.68639 7.77808 7.84640 8.34143 8.45476 9.18800 9.80733 10.28948 11.27950 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.018880 B = 0.003732 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.705977 B = 7500.628641 C = 8354.352624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.377 6.377 4 C 0.109 3.891 5 C -0.152 4.152 6 C 0.566 3.434 7 O -0.534 6.534 8 N -0.611 5.611 9 C 0.106 3.894 10 C -0.151 4.151 11 C 0.174 3.826 12 H 0.077 0.923 13 N -0.586 5.586 14 C 0.162 3.838 15 C -0.260 4.260 16 H 0.069 0.931 17 C 0.005 3.995 18 N -0.907 5.907 19 Si 0.907 3.093 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.086 3.914 24 C -0.137 4.137 25 C -0.155 4.155 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.031 0.969 38 H 0.046 0.954 39 H -0.001 1.001 40 H 0.254 0.746 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.115 -7.352 19.170 20.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.297 6.297 4 C 0.032 3.968 5 C -0.155 4.155 6 C 0.353 3.647 7 O -0.411 6.411 8 N -0.345 5.345 9 C -0.018 4.018 10 C -0.192 4.192 11 C 0.064 3.936 12 H 0.095 0.905 13 N -0.306 5.306 14 C 0.017 3.983 15 C -0.389 4.389 16 H 0.087 0.913 17 C -0.193 4.193 18 N -0.552 5.552 19 Si 0.737 3.263 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.209 1.209 23 C -0.039 4.039 24 C -0.174 4.174 25 C -0.192 4.192 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.049 0.951 38 H 0.065 0.935 39 H 0.018 0.982 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.486 -6.721 19.057 20.213 hybrid contribution -0.146 -0.497 -0.958 1.089 sum -0.632 -7.217 18.099 19.495 Atomic orbital electron populations 1.21733 0.93660 1.02025 1.03431 1.22469 0.95852 0.83786 0.99879 1.88020 1.20673 1.26176 1.94790 1.21777 0.82369 0.92193 1.00413 1.21254 1.03230 0.95876 0.95153 1.18891 0.82697 0.80813 0.82269 1.90684 1.26254 1.39510 1.84627 1.48485 1.24253 1.53568 1.08146 1.22102 0.85431 0.95744 0.98487 1.23212 1.01052 1.02920 0.91968 1.21390 0.92715 0.93847 0.85689 0.90489 1.43809 1.58822 1.25274 1.02708 1.20808 0.95536 0.87140 0.94788 1.19197 1.08257 1.27734 0.83759 0.91284 1.25009 0.95938 1.00506 0.97884 1.70061 1.16945 1.44699 1.23478 0.86297 0.79307 0.78110 0.82578 1.20975 1.21591 1.20896 1.23013 1.00483 0.98993 0.81387 1.22951 0.99331 1.01059 0.94101 1.23125 0.89751 1.03586 1.02775 0.91775 0.91713 0.91203 0.93330 0.93583 0.92440 0.92410 0.92207 0.92000 0.90547 0.90473 0.95105 0.93488 0.98237 0.93618 0.91496 0.91152 0.87936 0.87829 0.87713 0.87793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.28 37.16 0.38 -1.04 16 2 C 0.06 0.58 6.66 37.16 0.25 0.82 16 3 O -0.38 -5.13 10.27 -35.23 -0.36 -5.49 16 4 C 0.11 1.24 5.77 37.16 0.21 1.45 16 5 C -0.15 -1.92 1.51 -155.66 -0.24 -2.16 16 6 C 0.57 9.70 6.94 -10.98 -0.08 9.62 16 7 O -0.53 -11.37 17.29 5.55 0.10 -11.28 16 8 N -0.61 -10.12 3.34 -170.31 -0.57 -10.69 16 9 C 0.11 1.44 6.18 -2.91 -0.02 1.42 16 10 C -0.15 -2.50 6.50 -24.90 -0.16 -2.66 16 11 C 0.17 3.49 3.53 -65.78 -0.23 3.25 16 12 H 0.08 1.56 7.95 -51.93 -0.41 1.15 16 13 N -0.59 -14.30 2.96 -171.04 -0.51 -14.81 16 14 C 0.16 3.88 7.55 59.84 0.45 4.33 16 15 C -0.26 -7.02 9.62 -15.06 -0.14 -7.16 16 16 H 0.07 1.82 7.85 -52.49 -0.41 1.41 16 17 C 0.01 0.14 5.13 -17.43 -0.09 0.05 16 18 N -0.91 -25.86 10.58 55.49 0.59 -25.28 16 19 Si 0.91 21.62 29.57 -169.99 -5.03 16.59 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.09 1.64 6.44 -2.53 -0.02 1.63 16 24 C -0.14 -1.49 9.88 -26.73 -0.26 -1.75 16 25 C -0.16 -1.45 8.91 -26.73 -0.24 -1.69 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.47 8.12 -51.93 -0.42 0.04 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.63 7.31 -51.93 -0.38 0.25 16 32 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.06 0.71 7.33 -51.93 -0.38 0.33 16 34 H 0.06 0.73 7.18 -51.93 -0.37 0.35 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.08 1.35 7.02 -51.93 -0.36 0.98 16 37 H 0.03 0.79 7.43 -51.93 -0.39 0.40 16 38 H 0.05 1.23 7.17 -51.93 -0.37 0.86 16 39 H 0.00 -0.02 6.39 -51.93 -0.33 -0.35 16 40 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.07 1.35 6.41 -51.93 -0.33 1.02 16 42 H 0.07 1.45 8.09 -51.93 -0.42 1.03 16 43 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.10 1.00 7.76 -51.93 -0.40 0.60 16 LS Contribution 367.78 15.07 5.54 5.54 Total: -1.00 -32.31 367.78 -8.35 -40.66 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -7.93 Total: -1.37 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -0.18 Total: 6.13 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.49 Total: -50.78 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.27 Total: -16.77 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.31 -8.35 -40.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191010368.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.818 kcal (2) G-P(sol) polarization free energy of solvation -32.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds