Wall clock time and date at job start Tue Mar 31 2020 03:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47097 * 2 1 4 4 C 1.42898 * 113.99740 * 184.79141 * 3 2 1 5 5 C 1.53003 * 109.47229 * 175.20973 * 4 3 2 6 6 C 1.50701 * 115.55011 * 295.09584 * 5 4 3 7 7 O 1.21287 * 120.00108 * 99.86960 * 6 5 4 8 8 N 1.34779 * 120.00143 * 279.87477 * 6 5 4 9 9 C 1.47297 * 125.78966 * 354.98952 * 8 6 5 10 10 C 1.54323 * 107.30094 * 178.92874 * 9 8 6 11 11 C 1.55156 * 102.94474 * 337.81580 * 10 9 8 12 12 H 1.08998 * 111.00294 * 277.43119 * 11 10 9 13 13 N 1.46502 * 111.03136 * 153.59287 * 11 10 9 14 14 C 1.46494 * 120.00277 * 307.78419 * 13 11 10 15 15 C 1.36938 * 119.99804 * 127.79041 * 13 11 10 16 16 H 1.08001 * 120.00207 * 22.19429 * 15 13 11 17 17 C 1.38811 * 119.99804 * 202.20124 * 15 13 11 18 18 N 1.31616 * 120.00040 * 11.34463 * 17 15 13 19 19 Si 1.86799 * 119.99592 * 191.34522 * 17 15 13 20 20 H 1.48505 * 109.47399 * 60.00030 * 19 17 15 21 21 H 1.48507 * 109.46951 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47479 * 299.99507 * 19 17 15 23 23 C 1.47420 * 125.65249 * 174.99434 * 8 6 5 24 24 C 1.52999 * 117.51951 * 80.79103 * 5 4 3 25 25 C 1.52996 * 117.50211 * 149.42109 * 5 4 3 26 26 H 1.09000 * 109.46909 * 304.91582 * 1 2 3 27 27 H 1.08997 * 109.47332 * 64.91719 * 1 2 3 28 28 H 1.09003 * 109.46854 * 184.91687 * 1 2 3 29 29 H 1.08998 * 109.46915 * 239.99769 * 2 1 3 30 30 H 1.09005 * 109.47171 * 119.99702 * 2 1 3 31 31 H 1.09007 * 109.47659 * 55.21096 * 4 3 2 32 32 H 1.09003 * 109.47470 * 295.20734 * 4 3 2 33 33 H 1.08994 * 109.85268 * 59.50560 * 9 8 6 34 34 H 1.08998 * 109.87428 * 298.36275 * 9 8 6 35 35 H 1.09005 * 110.71483 * 219.45168 * 10 9 8 36 36 H 1.08997 * 110.72032 * 96.18641 * 10 9 8 37 37 H 1.08995 * 109.47249 * 94.06885 * 14 13 11 38 38 H 1.09003 * 109.47246 * 214.06804 * 14 13 11 39 39 H 1.09005 * 109.46985 * 334.06550 * 14 13 11 40 40 H 0.97003 * 119.99544 * 180.02562 * 18 17 15 41 41 H 1.09004 * 110.36880 * 85.25612 * 23 8 6 42 42 H 1.09000 * 110.36695 * 323.04981 * 23 8 6 43 43 H 1.09001 * 117.50180 * 214.97554 * 24 5 4 44 44 H 1.09006 * 117.49674 * 359.97438 * 24 5 4 45 45 H 1.08996 * 117.50186 * 359.97438 * 25 5 4 46 46 H 1.09000 * 117.49678 * 144.99789 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4266 1.4616 -0.1090 5 6 3.8125 2.9380 -0.2192 6 6 3.3313 3.6448 -1.4602 7 8 2.3427 4.3460 -1.4140 8 7 3.9994 3.4976 -2.6214 9 6 5.2654 2.7663 -2.8001 10 6 5.6331 2.8443 -4.2969 11 6 4.2677 3.1309 -4.9758 12 1 3.7026 2.2102 -5.1206 13 7 4.4502 3.8372 -6.2462 14 6 5.2570 5.0590 -6.2958 15 6 3.8665 3.3554 -7.3875 16 1 3.0103 2.7005 -7.3210 17 6 4.3755 3.7086 -8.6297 18 7 5.5398 4.3164 -8.7152 19 14 3.4079 3.3212 -10.1798 20 1 2.0903 4.0041 -10.1246 21 1 4.1626 3.7981 -11.3666 22 1 3.2012 1.8542 -10.2808 23 6 3.5842 4.0428 -3.9267 24 6 3.8777 3.7502 1.0758 25 6 5.1678 3.3586 0.3527 26 1 -0.3633 0.5882 0.8427 27 1 -0.3634 0.4356 -0.9307 28 1 -0.3633 -1.0239 0.0881 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.7668 0.9299 -0.9977 32 1 3.8949 1.0286 0.7749 33 1 5.1366 1.7253 -2.5038 34 1 6.0490 3.2301 -2.2011 35 1 6.0444 1.8959 -4.6428 36 1 6.3335 3.6592 -4.4799 37 1 6.2811 4.8072 -6.5710 38 1 4.8389 5.7407 -7.0365 39 1 5.2511 5.5382 -5.3168 40 1 5.8952 4.5635 -9.5833 41 1 3.9292 5.0710 -4.0354 42 1 2.5002 3.9942 -4.0306 43 1 3.5725 4.7956 1.0302 44 1 3.6452 3.2327 2.0066 45 1 5.7845 2.5836 0.8077 46 1 5.7115 4.1464 -0.1688 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191010368.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:08 Heat of formation + Delta-G solvation = -45.355816 kcal Electronic energy + Delta-G solvation = -24979.398824 eV Core-core repulsion = 21484.227219 eV Total energy + Delta-G solvation = -3495.171604 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.45094 -39.49074 -38.67134 -37.27749 -36.55520 -33.43391 -32.22864 -31.29392 -29.62044 -28.11937 -27.99149 -25.83194 -24.20336 -23.72666 -23.26630 -22.73898 -20.96057 -19.76345 -18.96914 -18.20890 -17.56043 -17.30543 -17.17535 -16.68438 -16.26028 -16.16607 -15.34051 -15.14837 -14.87686 -14.68231 -14.40406 -14.31431 -14.14472 -13.91413 -13.46070 -13.36076 -13.02793 -12.98308 -12.79622 -12.51720 -12.46975 -12.41135 -12.39316 -12.17882 -12.14502 -12.12104 -11.86577 -11.63255 -11.42995 -11.21807 -10.82686 -10.65043 -10.49417 -9.68931 -8.81605 -7.85284 -5.33864 1.46316 1.49278 1.54298 1.55563 1.88587 2.36644 2.50370 3.02605 3.26704 3.44451 3.54283 3.65257 3.86120 3.92716 3.95894 4.08487 4.15697 4.18408 4.28401 4.30999 4.39966 4.45404 4.48936 4.59380 4.66739 4.71874 4.77690 4.79677 4.84998 4.88395 4.96635 4.98302 5.01014 5.18400 5.21016 5.22349 5.23728 5.29214 5.42030 5.61232 5.70515 6.28278 6.29654 6.55320 7.11236 7.13918 7.82178 8.25858 9.17820 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.018880 B = 0.003732 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.705977 B = 7500.628641 C = 8354.352624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.415 6.415 4 C 0.108 3.892 5 C -0.172 4.172 6 C 0.560 3.440 7 O -0.590 6.590 8 N -0.610 5.610 9 C 0.112 3.888 10 C -0.140 4.140 11 C 0.169 3.831 12 H 0.071 0.929 13 N -0.602 5.602 14 C 0.181 3.819 15 C -0.271 4.271 16 H 0.069 0.931 17 C -0.045 4.045 18 N -0.934 5.934 19 Si 0.968 3.032 20 H -0.283 1.283 21 H -0.292 1.292 22 H -0.273 1.273 23 C 0.096 3.904 24 C -0.142 4.142 25 C -0.123 4.123 26 H 0.058 0.942 27 H 0.042 0.958 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.013 0.987 38 H 0.015 0.985 39 H 0.024 0.976 40 H 0.250 0.750 41 H 0.053 0.947 42 H 0.044 0.956 43 H 0.081 0.919 44 H 0.125 0.875 45 H 0.144 0.856 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.433 -9.490 21.322 23.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.335 6.335 4 C 0.032 3.968 5 C -0.175 4.175 6 C 0.349 3.651 7 O -0.470 6.470 8 N -0.343 5.343 9 C -0.009 4.009 10 C -0.180 4.180 11 C 0.059 3.941 12 H 0.090 0.910 13 N -0.324 5.324 14 C 0.036 3.964 15 C -0.401 4.401 16 H 0.086 0.914 17 C -0.241 4.241 18 N -0.580 5.580 19 Si 0.796 3.204 20 H -0.210 1.210 21 H -0.218 1.218 22 H -0.199 1.199 23 C -0.029 4.029 24 C -0.180 4.180 25 C -0.160 4.160 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.031 0.969 38 H 0.034 0.966 39 H 0.042 0.958 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.099 0.901 44 H 0.143 0.857 45 H 0.162 0.838 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.852 -8.897 21.246 23.050 hybrid contribution -0.619 0.190 -1.572 1.700 sum 0.233 -8.708 19.674 21.516 Atomic orbital electron populations 1.21775 0.93824 1.03320 1.02009 1.22651 0.95871 0.82748 1.01197 1.87988 1.22286 1.28149 1.95068 1.21952 0.81584 0.91067 1.02201 1.21265 1.06434 0.96605 0.93237 1.19819 0.81790 0.80041 0.83416 1.90649 1.28725 1.42020 1.85607 1.48567 1.25216 1.53462 1.07053 1.22252 0.84597 0.97459 0.96634 1.23055 0.98212 1.03101 0.93612 1.21491 0.95025 0.93230 0.84305 0.91033 1.43960 1.58862 1.25924 1.03620 1.20493 0.94121 0.86760 0.95011 1.19498 1.08350 1.27303 0.84975 0.91351 1.25715 0.96886 1.00926 1.00533 1.70207 1.18220 1.45931 1.23650 0.85334 0.77782 0.78214 0.79037 1.20954 1.21799 1.19889 1.22632 0.98814 0.98289 0.83204 1.23040 1.00754 0.99942 0.94240 1.23309 0.88520 1.03742 1.00396 0.92292 0.93882 0.88686 0.93035 0.91035 0.92163 0.88763 0.89242 0.88894 0.89429 0.91367 0.96884 0.96582 0.95784 0.94113 0.92836 0.93694 0.90076 0.85665 0.83800 0.87986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 10.28 71.98 0.74 -1.99 16 2 C 0.05 0.94 6.66 71.98 0.48 1.41 16 3 O -0.41 -10.60 10.27 -148.98 -1.53 -12.13 16 4 C 0.11 2.08 5.77 71.98 0.42 2.50 16 5 C -0.17 -3.91 1.51 -52.93 -0.08 -3.99 16 6 C 0.56 18.87 6.94 87.66 0.61 19.48 16 7 O -0.59 -25.95 17.29 -3.05 -0.05 -26.00 16 8 N -0.61 -19.60 3.34 -811.11 -2.71 -22.31 16 9 C 0.11 2.70 6.18 86.68 0.54 3.23 16 10 C -0.14 -4.36 6.50 31.78 0.21 -4.15 16 11 C 0.17 6.74 3.53 46.38 0.16 6.91 16 12 H 0.07 2.92 7.95 -2.39 -0.02 2.90 16 13 N -0.60 -29.92 2.96 -695.04 -2.06 -31.97 16 14 C 0.18 8.89 7.55 127.77 0.96 9.86 16 15 C -0.27 -14.87 9.62 84.03 0.81 -14.07 16 16 H 0.07 3.67 7.85 -2.91 -0.02 3.64 16 17 C -0.05 -2.50 5.13 84.86 0.44 -2.06 16 18 N -0.93 -54.30 10.58 21.65 0.23 -54.07 16 19 Si 0.97 44.93 29.57 68.60 2.03 46.96 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 23 C 0.10 3.76 6.44 86.85 0.56 4.32 16 24 C -0.14 -2.73 9.88 30.59 0.30 -2.43 16 25 C -0.12 -1.75 8.91 30.59 0.27 -1.48 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.05 0.89 8.12 -2.39 -0.02 0.87 16 30 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.06 1.09 7.31 -2.38 -0.02 1.07 16 32 H 0.09 1.13 8.09 -2.39 -0.02 1.11 16 33 H 0.09 1.70 7.33 -2.39 -0.02 1.69 16 34 H 0.09 1.74 7.18 -2.39 -0.02 1.72 16 35 H 0.09 2.55 8.14 -2.38 -0.02 2.54 16 36 H 0.07 2.27 7.02 -2.39 -0.02 2.25 16 37 H 0.01 0.68 7.43 -2.39 -0.02 0.66 16 38 H 0.02 0.85 7.17 -2.39 -0.02 0.83 16 39 H 0.02 1.03 6.39 -2.38 -0.02 1.02 16 40 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 41 H 0.05 2.22 6.41 -2.39 -0.02 2.20 16 42 H 0.04 1.95 8.09 -2.39 -0.02 1.93 16 43 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.13 1.83 8.14 -2.38 -0.02 1.81 16 45 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.10 1.54 7.76 -2.39 -0.02 1.52 16 Total: -1.00 -73.82 367.78 3.26 -70.56 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.94 Total: 11.42 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 6.41 Total: 17.54 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -4.53 Total: -108.36 kcal Atomic # 8 Polarization: -36.54 SS G_CDS: -1.58 Total: -38.12 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -73.82 3.26 -70.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191010368.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.202 kcal (2) G-P(sol) polarization free energy of solvation -73.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds