Wall clock time and date at job start Tue Mar 31 2020 04:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99921 * 2 1 4 4 H 1.48499 * 109.47315 * 270.00302 * 3 2 1 5 5 H 1.48501 * 109.47159 * 30.00068 * 3 2 1 6 6 H 1.48495 * 109.46986 * 150.00020 * 3 2 1 7 7 C 1.37881 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99755 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99836 * 180.02562 * 7 2 1 10 10 O 1.42099 * 106.40217 * 66.45794 * 9 7 2 11 11 O 1.42095 * 106.39965 * 293.53659 * 9 7 2 12 12 N 1.65597 * 107.21524 * 179.97438 * 9 7 2 13 13 C 1.39055 * 119.99741 * 65.00417 * 12 9 7 14 14 N 1.32516 * 120.15966 * 359.71898 * 13 12 9 15 15 N 1.28347 * 122.06569 * 179.69978 * 14 13 12 16 16 C 1.31818 * 122.28574 * 0.58986 * 15 14 13 17 17 C 1.38776 * 120.01013 * 359.71230 * 16 15 14 18 18 C 1.38606 * 118.04483 * 359.97438 * 17 16 15 19 19 C 1.50696 * 121.04468 * 180.02562 * 18 17 16 20 20 F 1.39900 * 109.47659 * 359.97438 * 19 18 17 21 21 F 1.39904 * 109.47067 * 119.97872 * 19 18 17 22 22 F 1.39900 * 109.47411 * 239.97479 * 19 18 17 23 23 H 0.97001 * 119.99809 * 0.02562 * 1 2 3 24 24 H 0.96999 * 120.00129 * 244.99728 * 12 9 7 25 25 H 1.07998 * 120.00050 * 179.68477 * 16 15 14 26 26 H 1.08006 * 120.97596 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 16 3.7666 -1.1940 0.0001 10 8 4.1674 -0.6504 1.2504 11 8 4.1683 -0.6488 -1.2491 12 7 4.2568 -2.7758 0.0000 13 6 3.9769 -3.5902 -1.0918 14 7 3.3133 -3.1054 -2.1313 15 7 3.0404 -3.8226 -3.1602 16 6 3.3907 -5.0903 -3.2478 17 6 4.0845 -5.6922 -2.2075 18 6 4.3886 -4.9225 -1.0956 19 6 5.1401 -5.5071 0.0725 20 9 5.4303 -6.8512 -0.1853 21 9 6.3326 -4.8003 0.2607 22 9 4.3550 -5.4127 1.2265 23 1 -0.4850 0.8401 -0.0004 24 1 4.7392 -3.1342 0.7614 25 1 3.1374 -5.6609 -4.1290 26 1 4.3796 -6.7297 -2.2629 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192951703.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:18 Heat of formation + Delta-G solvation = -185.719787 kcal Electronic energy + Delta-G solvation = -22606.051476 eV Core-core repulsion = 18396.931075 eV Total energy + Delta-G solvation = -4209.120401 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 297.018 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -51.43783 -48.90759 -48.89181 -42.38407 -37.92744 -37.35419 -36.70117 -35.20948 -34.94509 -32.10400 -28.66519 -28.34019 -25.54302 -24.47921 -21.56282 -20.28552 -20.19043 -19.75154 -19.72307 -19.08453 -18.84781 -17.96905 -17.15844 -16.62843 -16.26935 -16.12994 -15.68779 -15.61156 -15.54831 -15.29108 -15.20817 -15.00652 -14.99766 -14.96848 -13.92332 -13.58127 -13.50653 -13.44019 -13.05162 -12.86579 -12.67159 -12.44349 -11.92036 -11.73396 -11.34381 -11.26798 -10.88432 -10.32910 -8.96917 -7.53472 -0.75642 -0.31286 -0.19805 1.04059 1.15288 1.18822 1.25775 1.78057 1.88453 2.20973 2.33187 2.40410 2.54186 2.83837 3.01465 3.09669 3.23134 3.56537 3.70140 3.98088 4.05635 4.31957 4.64637 4.97966 5.34358 5.46352 5.96975 6.50033 7.47713 8.21113 Molecular weight = 297.02amu Principal moments of inertia in cm(-1) A = 0.023468 B = 0.006659 C = 0.005918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.832572 B = 4204.092835 C = 4730.407378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.112 3.888 3 Si 0.825 3.175 4 H -0.239 1.239 5 H -0.215 1.215 6 H -0.229 1.229 7 C -1.010 5.010 8 H 0.101 0.899 9 S 2.683 3.317 10 O -1.007 7.007 11 O -0.993 6.993 12 N -1.022 6.022 13 C 0.355 3.645 14 N -0.301 5.301 15 N -0.215 5.215 16 C 0.019 3.981 17 C -0.001 4.001 18 C -0.238 4.238 19 C 0.525 3.475 20 F -0.151 7.151 21 F -0.172 7.172 22 F -0.173 7.173 23 H 0.293 0.707 24 H 0.435 0.565 25 H 0.241 0.759 26 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.364 -16.046 -3.446 18.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.105 4.105 3 Si 0.641 3.359 4 H -0.162 1.162 5 H -0.136 1.136 6 H -0.152 1.152 7 C -1.144 5.144 8 H 0.119 0.881 9 S 2.784 3.216 10 O -0.997 6.997 11 O -0.982 6.982 12 N -0.768 5.768 13 C 0.114 3.886 14 N -0.148 5.148 15 N -0.054 5.054 16 C -0.149 4.149 17 C -0.030 4.030 18 C -0.255 4.255 19 C 0.469 3.531 20 F -0.132 7.132 21 F -0.154 7.154 22 F -0.154 7.154 23 H 0.103 0.897 24 H 0.273 0.727 25 H 0.257 0.743 26 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 8.972 -13.746 -4.143 16.929 hybrid contribution 0.308 -0.808 1.390 1.637 sum 9.280 -14.554 -2.752 17.478 Atomic orbital electron populations 1.69993 1.07352 1.30563 1.39974 1.25086 0.95663 1.01234 0.88523 0.87505 0.82828 0.82836 0.82695 1.16223 1.13643 1.15173 1.30347 1.15780 1.01733 1.66549 0.88070 1.01291 0.76920 0.70427 0.72971 1.93498 1.85529 1.75148 1.45516 1.93435 1.84740 1.75031 1.45027 1.53495 1.67867 1.31640 1.23841 1.19621 0.91432 0.88635 0.88953 1.73510 1.13677 1.29853 0.97791 1.72832 1.12060 1.07391 1.13148 1.25278 0.95755 0.92047 1.01805 1.22942 0.88919 1.03147 0.88015 1.21052 1.09737 0.94431 1.00311 1.17663 0.77158 0.76588 0.81659 1.93219 1.93539 1.32649 1.93776 1.93253 1.47949 1.78565 1.95594 1.93269 1.74429 1.95836 1.51908 0.89666 0.72661 0.74251 0.75882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.96 13.96 21.45 0.30 -49.66 15 2 C 0.11 6.58 5.47 84.66 0.46 7.04 15 3 Si 0.82 41.62 26.54 68.60 1.82 43.45 15 4 H -0.24 -11.82 7.11 99.48 0.71 -11.11 15 5 H -0.21 -9.43 7.11 99.48 0.71 -8.72 15 6 H -0.23 -11.75 5.61 99.48 0.56 -11.19 15 7 C -1.01 -58.63 9.89 67.74 0.67 -57.96 15 8 H 0.10 6.11 8.06 -2.91 -0.02 6.08 15 9 S 2.68 138.58 3.87 -56.49 -0.22 138.36 15 10 O -1.01 -53.71 16.02 -128.00 -2.05 -55.76 15 11 O -0.99 -54.81 15.73 -128.00 -2.01 -56.82 15 12 N -1.02 -41.50 5.66 -55.14 -0.31 -41.82 15 13 C 0.36 13.30 7.33 133.08 0.98 14.28 15 14 N -0.30 -12.91 9.55 -55.11 -0.53 -13.43 15 15 N -0.21 -7.37 11.49 -57.21 -0.66 -8.03 15 16 C 0.02 0.37 11.31 84.82 0.96 1.33 15 17 C 0.00 -0.01 9.58 22.49 0.22 0.20 15 18 C -0.24 -6.13 5.42 -19.49 -0.11 -6.24 15 19 C 0.52 11.85 2.81 71.23 0.20 12.05 15 20 F -0.15 -2.49 16.12 44.97 0.73 -1.76 15 21 F -0.17 -4.15 16.36 44.97 0.74 -3.41 15 22 F -0.17 -4.41 16.36 44.97 0.74 -3.67 15 23 H 0.29 15.44 8.31 -92.71 -0.77 14.67 15 24 H 0.43 14.82 6.43 -96.75 -0.62 14.20 15 25 H 0.24 1.75 8.06 -2.91 -0.02 1.73 15 26 H 0.22 1.04 7.33 -2.91 -0.02 1.02 15 Total: -1.00 -77.61 261.48 2.43 -75.19 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 0.51 Total: 6.68 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: 3.38 Total: -29.30 kcal Atomic # 7 Polarization: -111.75 SS G_CDS: -1.20 Total: -112.94 kcal Atomic # 8 Polarization: -108.52 SS G_CDS: -4.06 Total: -112.58 kcal Atomic # 9 Polarization: -11.04 SS G_CDS: 2.20 Total: -8.85 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 1.82 Total: 43.45 kcal Atomic # 16 Polarization: 138.58 SS G_CDS: -0.22 Total: 138.36 kcal Total: -77.61 2.43 -75.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951703.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.534 kcal (2) G-P(sol) polarization free energy of solvation -77.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds