Wall clock time and date at job start Tue Mar 31 2020 03:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99708 * 2 1 4 4 C 1.53008 * 109.46615 * 180.02562 * 3 2 1 5 5 C 1.52999 * 115.55153 * 294.17514 * 4 3 2 6 6 C 1.50701 * 109.47066 * 294.37716 * 5 4 3 7 7 O 1.21287 * 120.00451 * 354.10586 * 6 5 4 8 8 N 1.34776 * 120.00033 * 174.11237 * 6 5 4 9 9 C 1.48214 * 119.97134 * 179.97438 * 8 6 5 10 10 C 1.47143 * 110.34189 * 102.46405 * 9 8 6 11 11 C 1.53797 * 111.83683 * 58.30118 * 10 9 8 12 12 N 1.43465 * 107.95975 * 281.66232 * 11 10 9 13 13 C 1.36939 * 118.94131 * 273.61164 * 12 11 10 14 14 H 1.08000 * 119.99481 * 28.53126 * 13 12 11 15 15 C 1.38801 * 119.99909 * 208.52756 * 13 12 11 16 16 N 1.31625 * 120.00028 * 209.17099 * 15 13 12 17 17 Si 1.86807 * 120.00319 * 29.17653 * 15 13 12 18 18 H 1.48501 * 109.46801 * 263.72117 * 17 15 13 19 19 H 1.48498 * 109.47242 * 143.72281 * 17 15 13 20 20 H 1.48498 * 109.47000 * 23.72121 * 17 15 13 21 21 C 1.48857 * 122.11868 * 93.89354 * 12 11 10 22 22 C 1.43618 * 119.97099 * 359.97117 * 8 6 5 23 23 C 1.52997 * 117.49796 * 79.85109 * 4 3 2 24 24 C 1.53001 * 117.49679 * 148.50768 * 4 3 2 25 25 H 1.08997 * 109.47227 * 299.99719 * 1 2 3 26 26 H 1.08999 * 109.47368 * 59.99825 * 1 2 3 27 27 H 1.09001 * 109.47081 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47100 * 60.00275 * 3 2 1 29 29 H 1.08990 * 109.47368 * 299.99637 * 3 2 1 30 30 H 1.08990 * 109.47170 * 174.37822 * 5 4 3 31 31 H 1.08996 * 109.46981 * 54.37022 * 5 4 3 32 32 H 1.09007 * 109.32600 * 342.20331 * 9 8 6 33 33 H 1.08998 * 109.18564 * 222.64824 * 9 8 6 34 34 H 1.08991 * 109.01045 * 297.69135 * 10 9 8 35 35 H 1.09002 * 109.00612 * 178.90047 * 10 9 8 36 36 H 1.09001 * 109.76397 * 162.04926 * 11 10 9 37 37 H 1.09004 * 109.81076 * 41.30375 * 11 10 9 38 38 H 0.97008 * 119.99775 * 5.09295 * 16 15 13 39 39 H 1.08999 * 109.48154 * 80.34443 * 21 12 11 40 40 H 1.08997 * 109.47857 * 200.38312 * 21 12 11 41 41 H 1.09000 * 108.86908 * 31.47283 * 22 8 6 42 42 H 1.08996 * 108.87536 * 149.90630 * 22 8 6 43 43 H 1.09006 * 117.49288 * 214.99976 * 23 4 3 44 44 H 1.08994 * 117.49922 * 0.02562 * 23 4 3 45 45 H 1.09006 * 117.49533 * 359.97438 * 24 4 3 46 46 H 1.08998 * 117.50020 * 144.96817 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1492 0.5687 1.2583 6 6 3.9086 1.4819 2.4328 7 8 3.4013 2.5701 2.2610 8 7 4.2574 1.0894 3.6740 9 6 4.0211 1.9882 4.8286 10 6 2.8345 1.5523 5.5817 11 6 2.9775 0.1073 6.0883 12 7 2.7167 -0.7752 4.9877 13 6 1.4233 -1.1377 4.7211 14 1 0.6124 -0.4715 4.9759 15 6 1.1547 -2.3613 4.1234 16 7 0.0900 -2.5024 3.3624 17 14 2.3040 -3.8079 4.3990 18 1 3.2648 -3.8987 3.2704 19 1 1.5119 -5.0616 4.4768 20 1 3.0489 -3.6134 5.6689 21 6 3.8072 -1.3144 4.1299 22 6 4.8577 -0.1995 3.8769 23 6 4.2202 0.8907 -1.3369 24 6 4.3308 2.2826 -0.7097 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6885 1.8464 0.8900 29 1 1.6886 1.8463 -0.8899 30 1 5.2215 0.4382 1.1132 31 1 3.6879 -0.3999 1.4508 32 1 3.8659 3.0052 4.4682 33 1 4.8921 1.9666 5.4835 34 1 1.9599 1.6167 4.9345 35 1 2.6925 2.2153 6.4352 36 1 2.2582 -0.0764 6.8864 37 1 3.9894 -0.0556 6.4595 38 1 -0.4662 -1.7340 3.1591 39 1 4.2814 -2.1577 4.6321 40 1 3.3914 -1.6449 3.1781 41 1 5.4425 -0.4588 2.9943 42 1 5.5254 -0.1461 4.7367 43 1 5.1080 0.2584 -1.3190 44 1 3.5842 0.7838 -2.2155 45 1 3.7673 3.0908 -1.1761 46 1 5.2910 2.5665 -0.2791 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195780985.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:21 Heat of formation + Delta-G solvation = -23.532718 kcal Electronic energy + Delta-G solvation = -26619.875929 eV Core-core repulsion = 23125.650645 eV Total energy + Delta-G solvation = -3494.225284 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.04002 -38.33984 -36.92940 -36.16379 -34.26434 -32.91030 -31.37706 -29.29397 -27.73328 -27.32720 -25.65405 -25.01785 -23.09900 -22.39135 -22.19698 -19.86027 -19.42445 -18.24792 -17.35253 -16.57430 -16.16572 -15.68651 -15.67101 -15.37588 -14.92445 -14.44481 -14.16060 -13.99759 -13.83408 -13.44808 -13.06173 -12.89217 -12.77421 -12.38931 -12.24644 -11.97435 -11.70281 -11.49685 -11.44553 -11.35045 -11.13983 -10.83049 -10.68421 -10.37620 -10.29305 -10.14965 -10.06927 -9.85541 -9.79087 -9.27883 -9.22209 -9.00893 -8.34553 -8.11158 -6.90262 -6.26949 -3.23572 3.09097 3.44147 3.45955 3.56933 3.71360 3.81682 4.34670 4.65767 4.81926 4.84929 4.95725 5.03321 5.17855 5.28156 5.43137 5.47109 5.52087 5.57714 5.62104 5.68505 5.73805 5.81983 5.82568 5.86889 5.90647 5.93088 5.99050 6.09152 6.11398 6.21317 6.24188 6.27992 6.30977 6.32937 6.38955 6.52414 6.65339 6.74932 6.93306 7.16083 7.63806 7.91376 8.16517 8.53358 8.68192 9.08743 9.73552 10.22627 11.13655 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.012840 B = 0.007658 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.131773 B = 3655.342873 C = 4714.221043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.380 6.380 3 C 0.099 3.901 4 C -0.096 4.096 5 C -0.102 4.102 6 C 0.526 3.474 7 O -0.550 6.550 8 N -0.589 5.589 9 C 0.130 3.870 10 C -0.167 4.167 11 C 0.161 3.839 12 N -0.594 5.594 13 C -0.354 4.354 14 H 0.061 0.939 15 C 0.001 3.999 16 N -0.903 5.903 17 Si 1.039 2.961 18 H -0.294 1.294 19 H -0.299 1.299 20 H -0.288 1.288 21 C 0.113 3.887 22 C 0.092 3.908 23 C -0.169 4.169 24 C -0.157 4.157 25 H 0.040 0.960 26 H 0.029 0.971 27 H 0.089 0.911 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.032 0.968 38 H 0.265 0.735 39 H 0.032 0.968 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.100 6.895 -4.414 13.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.298 6.298 3 C 0.022 3.978 4 C -0.097 4.097 5 C -0.142 4.142 6 C 0.315 3.685 7 O -0.428 6.428 8 N -0.320 5.320 9 C 0.009 3.991 10 C -0.208 4.208 11 C 0.033 3.967 12 N -0.317 5.317 13 C -0.482 4.482 14 H 0.078 0.922 15 C -0.202 4.202 16 N -0.540 5.540 17 Si 0.869 3.131 18 H -0.222 1.222 19 H -0.227 1.227 20 H -0.215 1.215 21 C -0.014 4.014 22 C -0.034 4.034 23 C -0.206 4.206 24 C -0.194 4.194 25 H 0.059 0.941 26 H 0.047 0.953 27 H 0.107 0.893 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.126 0.874 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.111 0.889 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.143 5.705 -4.795 12.586 hybrid contribution -0.477 1.673 0.459 1.799 sum 9.666 7.377 -4.335 12.910 Atomic orbital electron populations 1.22644 0.80927 1.03041 0.98926 1.87900 1.19614 1.27058 1.95275 1.21930 0.90367 0.85160 1.00296 1.20850 0.93011 1.03384 0.92422 1.21198 1.01244 1.00336 0.91394 1.20450 0.77119 0.87011 0.83880 1.90595 1.43786 1.23189 1.85262 1.47351 1.61397 1.16650 1.06625 1.20534 0.97837 0.93970 0.86774 1.21808 0.99172 1.00304 0.99531 1.20341 0.97792 0.88359 0.90175 1.43855 1.03636 1.54559 1.29614 1.20028 0.83239 1.02062 1.42908 0.92151 1.26064 0.99719 0.98557 0.95855 1.70847 1.17691 1.34396 1.31061 0.84138 0.75490 0.77354 0.76076 1.22179 1.22669 1.21464 1.22529 0.89525 0.93512 0.95804 1.21897 0.95769 0.84436 1.01304 1.23052 1.02579 0.98812 0.96153 1.22911 1.01349 0.92049 1.03058 0.94107 0.95289 0.89274 0.91760 0.94215 0.89464 0.87422 0.90448 0.92247 0.91316 0.92709 0.93182 0.94923 0.92563 0.95001 0.91052 0.91180 0.91484 0.88736 0.88674 0.88913 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 11.01 101.05 1.11 1.84 16 2 O -0.38 -7.53 10.63 -35.23 -0.37 -7.91 16 3 C 0.10 1.75 5.56 37.16 0.21 1.96 16 4 C -0.10 -1.52 1.26 -154.51 -0.19 -1.71 16 5 C -0.10 -1.68 4.01 -27.88 -0.11 -1.79 16 6 C 0.53 9.81 7.44 -10.99 -0.08 9.73 16 7 O -0.55 -11.47 14.03 5.55 0.08 -11.39 16 8 N -0.59 -10.32 2.46 -176.40 -0.43 -10.76 16 9 C 0.13 2.15 5.70 -5.91 -0.03 2.11 16 10 C -0.17 -3.04 5.64 -29.13 -0.16 -3.20 16 11 C 0.16 3.18 5.63 -5.23 -0.03 3.15 16 12 N -0.59 -13.74 2.24 -171.75 -0.38 -14.12 16 13 C -0.35 -9.75 9.42 -15.06 -0.14 -9.90 16 14 H 0.06 1.83 8.06 -52.49 -0.42 1.41 16 15 C 0.00 0.04 4.96 -17.43 -0.09 -0.05 16 16 N -0.90 -27.22 13.70 55.49 0.76 -26.46 16 17 Si 1.04 25.58 24.82 -169.99 -4.22 21.36 16 18 H -0.29 -6.84 7.03 56.52 0.40 -6.44 16 19 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 20 H -0.29 -6.80 6.97 56.52 0.39 -6.40 16 21 C 0.11 2.31 4.62 -1.54 -0.01 2.30 16 22 C 0.09 1.48 4.97 -4.37 -0.02 1.46 16 23 C -0.17 -2.15 9.94 -26.70 -0.27 -2.42 16 24 C -0.16 -2.05 9.81 -26.70 -0.26 -2.31 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 28 H 0.06 1.30 6.66 -51.93 -0.35 0.96 16 29 H 0.04 0.62 8.09 -51.93 -0.42 0.20 16 30 H 0.09 1.16 7.61 -51.93 -0.40 0.76 16 31 H 0.11 2.02 6.94 -51.93 -0.36 1.66 16 32 H 0.08 1.32 7.13 -51.93 -0.37 0.95 16 33 H 0.06 0.82 8.05 -51.93 -0.42 0.40 16 34 H 0.07 1.54 7.91 -51.93 -0.41 1.13 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.05 1.02 8.02 -51.93 -0.42 0.61 16 37 H 0.03 0.57 7.59 -51.93 -0.39 0.17 16 38 H 0.26 8.00 8.73 -40.82 -0.36 7.64 16 39 H 0.03 0.64 6.23 -51.93 -0.32 0.32 16 40 H 0.07 1.64 5.51 -51.93 -0.29 1.35 16 41 H 0.07 0.95 6.54 -51.93 -0.34 0.61 16 42 H 0.07 0.94 7.73 -51.93 -0.40 0.54 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 354.90 15.07 5.35 5.35 Total: -1.00 -32.11 354.90 -7.16 -39.27 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.85 Total: 3.48 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -0.08 Total: 1.18 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.06 Total: -51.34 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.30 Total: -19.30 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -4.22 Total: 21.36 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.11 -7.16 -39.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195780985.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.737 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds