Wall clock time and date at job start Tue Mar 31 2020 03:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99708 * 2 1 4 4 C 1.53008 * 109.46615 * 180.02562 * 3 2 1 5 5 C 1.52999 * 115.55153 * 294.17514 * 4 3 2 6 6 C 1.50701 * 109.47066 * 294.37716 * 5 4 3 7 7 O 1.21287 * 120.00451 * 354.10586 * 6 5 4 8 8 N 1.34776 * 120.00033 * 174.11237 * 6 5 4 9 9 C 1.48214 * 119.97134 * 179.97438 * 8 6 5 10 10 C 1.47143 * 110.34189 * 102.46405 * 9 8 6 11 11 C 1.53797 * 111.83683 * 58.30118 * 10 9 8 12 12 N 1.43465 * 107.95975 * 281.66232 * 11 10 9 13 13 C 1.36939 * 118.94131 * 273.61164 * 12 11 10 14 14 H 1.08000 * 119.99481 * 28.53126 * 13 12 11 15 15 C 1.38801 * 119.99909 * 208.52756 * 13 12 11 16 16 N 1.31625 * 120.00028 * 209.17099 * 15 13 12 17 17 Si 1.86807 * 120.00319 * 29.17653 * 15 13 12 18 18 H 1.48501 * 109.46801 * 263.72117 * 17 15 13 19 19 H 1.48498 * 109.47242 * 143.72281 * 17 15 13 20 20 H 1.48498 * 109.47000 * 23.72121 * 17 15 13 21 21 C 1.48857 * 122.11868 * 93.89354 * 12 11 10 22 22 C 1.43618 * 119.97099 * 359.97117 * 8 6 5 23 23 C 1.52997 * 117.49796 * 79.85109 * 4 3 2 24 24 C 1.53001 * 117.49679 * 148.50768 * 4 3 2 25 25 H 1.08997 * 109.47227 * 299.99719 * 1 2 3 26 26 H 1.08999 * 109.47368 * 59.99825 * 1 2 3 27 27 H 1.09001 * 109.47081 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47100 * 60.00275 * 3 2 1 29 29 H 1.08990 * 109.47368 * 299.99637 * 3 2 1 30 30 H 1.08990 * 109.47170 * 174.37822 * 5 4 3 31 31 H 1.08996 * 109.46981 * 54.37022 * 5 4 3 32 32 H 1.09007 * 109.32600 * 342.20331 * 9 8 6 33 33 H 1.08998 * 109.18564 * 222.64824 * 9 8 6 34 34 H 1.08991 * 109.01045 * 297.69135 * 10 9 8 35 35 H 1.09002 * 109.00612 * 178.90047 * 10 9 8 36 36 H 1.09001 * 109.76397 * 162.04926 * 11 10 9 37 37 H 1.09004 * 109.81076 * 41.30375 * 11 10 9 38 38 H 0.97008 * 119.99775 * 5.09295 * 16 15 13 39 39 H 1.08999 * 109.48154 * 80.34443 * 21 12 11 40 40 H 1.08997 * 109.47857 * 200.38312 * 21 12 11 41 41 H 1.09000 * 108.86908 * 31.47283 * 22 8 6 42 42 H 1.08996 * 108.87536 * 149.90630 * 22 8 6 43 43 H 1.09006 * 117.49288 * 214.99976 * 23 4 3 44 44 H 1.08994 * 117.49922 * 0.02562 * 23 4 3 45 45 H 1.09006 * 117.49533 * 359.97438 * 24 4 3 46 46 H 1.08998 * 117.50020 * 144.96817 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1492 0.5687 1.2583 6 6 3.9086 1.4819 2.4328 7 8 3.4013 2.5701 2.2610 8 7 4.2574 1.0894 3.6740 9 6 4.0211 1.9882 4.8286 10 6 2.8345 1.5523 5.5817 11 6 2.9775 0.1073 6.0883 12 7 2.7167 -0.7752 4.9877 13 6 1.4233 -1.1377 4.7211 14 1 0.6124 -0.4715 4.9759 15 6 1.1547 -2.3613 4.1234 16 7 0.0900 -2.5024 3.3624 17 14 2.3040 -3.8079 4.3990 18 1 3.2648 -3.8987 3.2704 19 1 1.5119 -5.0616 4.4768 20 1 3.0489 -3.6134 5.6689 21 6 3.8072 -1.3144 4.1299 22 6 4.8577 -0.1995 3.8769 23 6 4.2202 0.8907 -1.3369 24 6 4.3308 2.2826 -0.7097 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6885 1.8464 0.8900 29 1 1.6886 1.8463 -0.8899 30 1 5.2215 0.4382 1.1132 31 1 3.6879 -0.3999 1.4508 32 1 3.8659 3.0052 4.4682 33 1 4.8921 1.9666 5.4835 34 1 1.9599 1.6167 4.9345 35 1 2.6925 2.2153 6.4352 36 1 2.2582 -0.0764 6.8864 37 1 3.9894 -0.0556 6.4595 38 1 -0.4662 -1.7340 3.1591 39 1 4.2814 -2.1577 4.6321 40 1 3.3914 -1.6449 3.1781 41 1 5.4425 -0.4588 2.9943 42 1 5.5254 -0.1461 4.7367 43 1 5.1080 0.2584 -1.3190 44 1 3.5842 0.7838 -2.2155 45 1 3.7673 3.0908 -1.1761 46 1 5.2910 2.5665 -0.2791 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195780985.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:21 Heat of formation + Delta-G solvation = -45.134744 kcal Electronic energy + Delta-G solvation = -26620.812663 eV Core-core repulsion = 23125.650645 eV Total energy + Delta-G solvation = -3495.162018 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.41884 -39.68736 -38.51557 -37.50728 -35.95589 -34.46101 -33.34754 -30.57913 -29.24209 -28.84472 -27.24940 -26.46848 -24.89769 -23.81055 -23.25749 -21.62219 -20.71916 -19.71166 -19.19519 -18.05239 -17.57551 -17.19509 -17.03501 -16.82004 -16.53448 -15.99857 -15.66929 -15.57319 -15.33108 -15.02632 -14.55735 -14.40251 -14.26600 -13.97022 -13.76514 -13.38569 -13.31095 -13.01315 -12.82342 -12.57466 -12.47492 -12.36215 -12.11965 -12.01682 -11.85976 -11.67976 -11.60256 -11.34969 -11.32012 -11.01521 -10.73702 -10.48421 -10.37345 -9.55152 -8.90326 -8.48758 -5.41885 1.46263 1.58496 1.67470 1.76949 2.16830 2.58225 2.61318 3.05410 3.12536 3.49983 3.67608 3.68525 3.80493 3.95902 4.04778 4.11188 4.17923 4.23219 4.25574 4.35276 4.39991 4.44102 4.49787 4.52038 4.63729 4.67729 4.72192 4.76312 4.79205 4.84527 4.91146 4.93684 4.98010 5.02062 5.05386 5.11633 5.19563 5.26139 5.41942 5.75039 5.88046 6.18554 6.33896 6.54647 6.98862 7.28449 7.76982 8.12201 8.86567 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.012840 B = 0.007658 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.131773 B = 3655.342873 C = 4714.221043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.403 6.403 3 C 0.102 3.898 4 C -0.134 4.134 5 C -0.094 4.094 6 C 0.515 3.485 7 O -0.581 6.581 8 N -0.593 5.593 9 C 0.129 3.871 10 C -0.153 4.153 11 C 0.157 3.843 12 N -0.607 5.607 13 C -0.340 4.340 14 H 0.009 0.991 15 C -0.053 4.053 16 N -0.937 5.937 17 Si 1.089 2.911 18 H -0.270 1.270 19 H -0.310 1.310 20 H -0.264 1.264 21 C 0.105 3.895 22 C 0.096 3.904 23 C -0.146 4.146 24 C -0.142 4.142 25 H 0.016 0.984 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.024 0.976 29 H 0.060 0.940 30 H 0.126 0.874 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.009 0.991 35 H 0.082 0.918 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.245 0.755 39 H 0.050 0.950 40 H 0.039 0.961 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.116 0.884 44 H 0.100 0.900 45 H 0.096 0.904 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.572 6.770 -4.550 16.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.322 6.322 3 C 0.025 3.975 4 C -0.135 4.135 5 C -0.134 4.134 6 C 0.305 3.695 7 O -0.462 6.462 8 N -0.323 5.323 9 C 0.008 3.992 10 C -0.194 4.194 11 C 0.030 3.970 12 N -0.331 5.331 13 C -0.470 4.470 14 H 0.027 0.973 15 C -0.250 4.250 16 N -0.577 5.577 17 Si 0.914 3.086 18 H -0.196 1.196 19 H -0.239 1.239 20 H -0.189 1.189 21 C -0.020 4.020 22 C -0.030 4.030 23 C -0.183 4.183 24 C -0.179 4.179 25 H 0.034 0.966 26 H 0.084 0.916 27 H 0.100 0.900 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.144 0.856 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.123 0.877 34 H 0.028 0.972 35 H 0.100 0.900 36 H 0.052 0.948 37 H 0.093 0.907 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.120 0.880 42 H 0.124 0.876 43 H 0.135 0.865 44 H 0.119 0.881 45 H 0.115 0.885 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 14.660 5.604 -4.906 16.443 hybrid contribution -1.971 1.837 0.544 2.749 sum 12.689 7.441 -4.362 15.343 Atomic orbital electron populations 1.22641 0.80524 1.02741 0.99448 1.87859 1.20352 1.28697 1.95335 1.21948 0.92312 0.83956 0.99245 1.20909 0.91623 1.06887 0.94037 1.21155 1.03308 0.98103 0.90822 1.20998 0.76533 0.86978 0.84974 1.90573 1.44965 1.24758 1.85864 1.47539 1.60965 1.17289 1.06549 1.20631 0.98476 0.93263 0.86879 1.21654 0.97829 1.00309 0.99638 1.20503 0.99568 0.88029 0.88868 1.43941 1.02513 1.55164 1.31436 1.19769 0.84680 1.00921 1.41628 0.97326 1.27275 1.00730 1.01412 0.95539 1.70970 1.19375 1.33459 1.33914 0.83488 0.74241 0.73202 0.77693 1.19574 1.23875 1.18895 1.22658 0.89633 0.95810 0.93914 1.21962 0.94506 0.81951 1.04568 1.23163 1.02476 0.98581 0.94078 1.22992 1.01082 0.92131 1.01726 0.96575 0.91648 0.90043 0.95759 0.92186 0.85604 0.90294 0.91387 0.87692 0.97207 0.89970 0.94809 0.90660 0.94649 0.93203 0.94209 0.87976 0.87642 0.86550 0.88124 0.88519 0.87508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.62 11.01 113.37 1.25 2.86 16 2 O -0.40 -16.71 10.63 -148.98 -1.58 -18.30 16 3 C 0.10 3.71 5.56 71.98 0.40 4.11 16 4 C -0.13 -4.08 1.26 -52.18 -0.07 -4.15 16 5 C -0.09 -2.97 4.01 29.85 0.12 -2.85 16 6 C 0.52 18.84 7.44 87.66 0.65 19.49 16 7 O -0.58 -24.62 14.03 -3.05 -0.04 -24.67 16 8 N -0.59 -19.47 2.46 -830.39 -2.04 -21.51 16 9 C 0.13 3.93 5.70 84.23 0.48 4.41 16 10 C -0.15 -5.50 5.64 29.04 0.16 -5.34 16 11 C 0.16 5.96 5.63 87.21 0.49 6.45 16 12 N -0.61 -27.91 2.24 -697.30 -1.56 -29.47 16 13 C -0.34 -19.67 9.42 84.03 0.79 -18.88 16 14 H 0.01 0.59 8.06 -2.91 -0.02 0.56 16 15 C -0.05 -3.11 4.96 84.86 0.42 -2.69 16 16 N -0.94 -59.86 13.70 21.65 0.30 -59.56 16 17 Si 1.09 51.78 24.82 68.60 1.70 53.48 16 18 H -0.27 -11.69 7.03 99.48 0.70 -10.99 16 19 H -0.31 -15.27 7.11 99.48 0.71 -14.57 16 20 H -0.26 -11.41 6.97 99.48 0.69 -10.72 16 21 C 0.11 4.07 4.62 86.70 0.40 4.47 16 22 C 0.10 2.67 4.97 87.69 0.44 3.11 16 23 C -0.15 -3.27 9.94 30.62 0.30 -2.97 16 24 C -0.14 -3.35 9.81 30.62 0.30 -3.05 16 25 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 28 H 0.02 1.06 6.66 -2.39 -0.02 1.04 16 29 H 0.06 1.88 8.09 -2.39 -0.02 1.86 16 30 H 0.13 2.86 7.61 -2.39 -0.02 2.84 16 31 H 0.08 2.96 6.94 -2.39 -0.02 2.95 16 32 H 0.07 2.23 7.13 -2.38 -0.02 2.21 16 33 H 0.11 2.32 8.05 -2.39 -0.02 2.30 16 34 H 0.01 0.43 7.91 -2.39 -0.02 0.41 16 35 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.03 1.37 8.02 -2.39 -0.02 1.35 16 37 H 0.08 2.26 7.59 -2.38 -0.02 2.25 16 38 H 0.24 16.11 8.73 -92.70 -0.81 15.30 16 39 H 0.05 1.78 6.23 -2.39 -0.01 1.77 16 40 H 0.04 1.79 5.51 -2.39 -0.01 1.78 16 41 H 0.10 2.26 6.54 -2.39 -0.02 2.24 16 42 H 0.11 2.23 7.73 -2.39 -0.02 2.22 16 43 H 0.12 2.11 8.14 -2.38 -0.02 2.09 16 44 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.10 2.18 8.14 -2.38 -0.02 2.17 16 46 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -77.31 354.90 3.80 -73.51 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.89 Total: 21.53 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 6.14 Total: 4.97 kcal Atomic # 7 Polarization: -107.23 SS G_CDS: -3.31 Total: -110.54 kcal Atomic # 8 Polarization: -41.34 SS G_CDS: -1.63 Total: -42.96 kcal Atomic # 14 Polarization: 51.78 SS G_CDS: 1.70 Total: 53.48 kcal Total: -77.31 3.80 -73.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195780985.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.378 kcal (2) G-P(sol) polarization free energy of solvation -77.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds