Wall clock time and date at job start Tue Mar 31 2020 03:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42895 * 109.47317 * 2 1 4 4 C 1.42893 * 114.00174 * 183.45052 * 3 2 1 5 5 H 1.09004 * 109.47087 * 21.57177 * 4 3 2 6 6 C 1.50701 * 109.47315 * 141.57210 * 4 3 2 7 7 O 1.21277 * 119.99855 * 12.96327 * 6 4 3 8 8 N 1.34778 * 120.00359 * 192.96555 * 6 4 3 9 9 C 1.48218 * 119.96933 * 355.57614 * 8 6 4 10 10 C 1.47144 * 110.33913 * 102.46382 * 9 8 6 11 11 C 1.53799 * 111.83911 * 58.30128 * 10 9 8 12 12 N 1.43466 * 107.96036 * 281.66837 * 11 10 9 13 13 C 1.36938 * 118.93674 * 273.63039 * 12 11 10 14 14 H 1.07993 * 120.00473 * 29.05109 * 13 12 11 15 15 C 1.38817 * 119.99840 * 209.05329 * 13 12 11 16 16 N 1.31621 * 119.99718 * 10.12279 * 15 13 12 17 17 Si 1.86791 * 120.00110 * 190.12226 * 15 13 12 18 18 H 1.48494 * 109.47222 * 60.00039 * 17 15 13 19 19 H 1.48506 * 109.47464 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47462 * 299.99864 * 17 15 13 21 21 C 1.48861 * 122.12204 * 93.65101 * 12 11 10 22 22 C 1.43617 * 119.97217 * 175.30461 * 8 6 4 23 23 C 1.53002 * 109.47514 * 261.57373 * 4 3 2 24 24 C 1.53000 * 117.49768 * 64.23590 * 23 4 3 25 25 C 1.52998 * 117.49438 * 355.61257 * 23 4 3 26 26 H 1.09005 * 109.47118 * 59.99931 * 1 2 3 27 27 H 1.08997 * 109.47068 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46893 * 300.00004 * 1 2 3 29 29 H 1.09006 * 109.46868 * 240.00235 * 2 1 3 30 30 H 1.09001 * 109.47087 * 120.00812 * 2 1 3 31 31 H 1.08997 * 109.32641 * 222.73008 * 9 8 6 32 32 H 1.08996 * 109.32237 * 342.37958 * 9 8 6 33 33 H 1.09001 * 109.00422 * 178.89876 * 10 9 8 34 34 H 1.08992 * 109.01126 * 297.76779 * 10 9 8 35 35 H 1.09000 * 109.76472 * 41.28153 * 11 10 9 36 36 H 1.09002 * 109.76498 * 162.00123 * 11 10 9 37 37 H 0.97001 * 119.99863 * 179.97438 * 16 15 13 38 38 H 1.09007 * 109.47588 * 80.58061 * 21 12 11 39 39 H 1.08995 * 109.47789 * 200.60065 * 21 12 11 40 40 H 1.08998 * 108.87351 * 31.46807 * 22 8 6 41 41 H 1.09006 * 108.87399 * 149.91031 * 22 8 6 42 42 H 1.09001 * 115.56147 * 209.92579 * 23 4 3 43 43 H 1.08997 * 117.49643 * 145.02519 * 24 23 4 44 44 H 1.08999 * 117.50048 * 0.02562 * 24 23 4 45 45 H 1.08996 * 117.50237 * 0.02562 * 25 23 4 46 46 H 1.08999 * 117.51650 * 214.96571 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4286 1.4608 -0.0786 5 1 3.8436 0.5448 -0.4991 6 6 3.7914 2.6278 -0.9604 7 8 2.9430 3.4335 -1.2795 8 7 5.0588 2.7761 -1.3945 9 6 6.1153 1.8482 -0.9259 10 6 6.4212 0.8539 -1.9665 11 6 6.8780 1.5184 -3.2762 12 7 5.7119 2.0059 -3.9551 13 6 5.0230 1.1580 -4.7807 14 1 5.0249 0.0956 -4.5870 15 6 4.3222 1.6641 -5.8669 16 7 4.4778 2.9219 -6.2222 17 14 3.1586 0.5602 -6.8242 18 1 2.0975 0.0543 -5.9169 19 1 2.5381 1.3346 -7.9290 20 1 3.9155 -0.5862 -7.3883 21 6 5.2270 3.4037 -3.7912 22 6 5.3831 3.8294 -2.3154 23 6 4.0008 1.6834 1.3229 24 6 3.8249 0.5582 2.3446 25 6 3.0063 1.8443 2.4744 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5140 0.8899 31 1 7.0164 2.4156 -0.6931 32 1 5.7712 1.3334 -0.0288 33 1 7.2128 0.1963 -1.6073 34 1 5.5287 0.2601 -2.1635 35 1 7.5489 2.3483 -3.0540 36 1 7.3906 0.7873 -3.9012 37 1 3.9884 3.2754 -6.9814 38 1 5.8123 4.0683 -4.4268 39 1 4.1765 3.4598 -4.0766 40 1 4.7254 4.6778 -2.1265 41 1 6.4141 4.1403 -2.1465 42 1 4.9216 2.2649 1.3681 43 1 4.6301 0.3995 3.0620 44 1 3.3021 -0.3408 2.0183 45 1 1.9446 1.7912 2.2337 46 1 3.2728 2.5315 3.2775 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195873985.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:19 Heat of formation + Delta-G solvation = -18.146673 kcal Electronic energy + Delta-G solvation = -26319.343907 eV Core-core repulsion = 22825.352180 eV Total energy + Delta-G solvation = -3493.991727 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.22703 -38.38772 -36.76305 -35.95531 -34.27296 -32.30670 -31.49709 -30.91761 -28.64074 -26.77089 -25.42607 -23.52866 -23.06274 -22.32443 -22.15191 -20.72214 -19.78642 -18.72284 -16.98944 -16.90952 -16.47899 -16.19322 -15.45199 -15.24795 -14.69870 -14.34522 -14.07475 -13.80974 -13.70233 -13.29897 -12.97246 -12.74125 -12.61238 -12.41208 -12.24104 -12.18387 -11.65841 -11.55768 -11.37440 -11.15013 -11.12405 -10.88802 -10.76391 -10.59299 -10.55453 -10.43493 -10.16943 -10.08022 -9.75521 -9.71362 -9.63209 -8.91370 -8.42849 -7.96690 -6.59613 -5.73045 -3.20697 3.08276 3.18793 3.40293 3.46491 3.46879 3.76494 4.02913 4.53691 4.57055 4.69809 4.85790 4.99912 5.08006 5.12850 5.20229 5.28156 5.33952 5.47186 5.50883 5.54731 5.58840 5.64136 5.67534 5.79489 5.84127 5.92115 5.93362 6.01994 6.14633 6.17696 6.18826 6.21693 6.41244 6.44685 6.51187 6.78389 6.97348 7.01357 7.24411 7.50701 7.70401 7.83269 7.97464 8.52526 8.78743 9.26932 9.93745 10.40955 11.34544 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.014657 B = 0.006071 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.946512 B = 4610.833262 C = 5557.950845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 O -0.351 6.351 4 C 0.108 3.892 5 H 0.088 0.912 6 C 0.521 3.479 7 O -0.524 6.524 8 N -0.583 5.583 9 C 0.115 3.885 10 C -0.175 4.175 11 C 0.164 3.836 12 N -0.590 5.590 13 C -0.259 4.259 14 H 0.060 0.940 15 C 0.009 3.991 16 N -0.905 5.905 17 Si 0.901 3.099 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.283 1.283 21 C 0.167 3.833 22 C 0.090 3.910 23 C -0.177 4.177 24 C -0.179 4.179 25 C -0.159 4.159 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.033 0.967 36 H 0.045 0.955 37 H 0.254 0.746 38 H 0.041 0.959 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.116 0.884 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.106 0.894 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.256 -5.096 16.742 17.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.269 6.269 4 C 0.046 3.954 5 H 0.105 0.895 6 C 0.307 3.693 7 O -0.399 6.399 8 N -0.316 5.316 9 C -0.007 4.007 10 C -0.216 4.216 11 C 0.035 3.965 12 N -0.311 5.311 13 C -0.389 4.389 14 H 0.078 0.922 15 C -0.190 4.190 16 N -0.549 5.549 17 Si 0.731 3.269 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.210 1.210 21 C 0.042 3.958 22 C -0.034 4.034 23 C -0.196 4.196 24 C -0.216 4.216 25 C -0.196 4.196 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.134 0.866 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.125 0.875 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.594 -4.363 16.418 16.999 hybrid contribution -0.343 -0.931 -0.676 1.200 sum 0.251 -5.293 15.743 16.611 Atomic orbital electron populations 1.21717 0.93599 1.02002 1.03331 1.22702 0.95899 0.84012 1.00074 1.88027 1.18844 1.25885 1.94171 1.21345 0.82951 0.98092 0.93000 0.89479 1.20067 0.82333 0.86296 0.80622 1.90671 1.47922 1.43517 1.57838 1.47290 1.07529 1.31945 1.44862 1.20896 0.90706 0.92039 0.97099 1.21962 1.01647 0.98742 0.99244 1.20241 0.89321 0.96007 0.90957 1.43637 1.26505 1.09554 1.51453 1.19035 1.26222 0.90021 1.03606 0.92194 1.25093 1.00823 0.96366 0.96705 1.69962 1.43399 1.13555 1.27982 0.86404 0.81132 0.79867 0.79514 1.21099 1.21555 1.20965 1.21781 1.00907 0.84886 0.88230 1.21900 0.99284 0.89641 0.92603 1.22789 1.01803 1.04439 0.90519 1.23072 1.03438 0.93086 1.02008 1.22902 0.98609 0.99176 0.98893 0.91503 0.91229 0.91980 0.93006 0.93360 0.91524 0.90758 0.92487 0.91695 0.94838 0.93630 0.93568 0.94133 0.90642 0.91084 0.92581 0.86601 0.88585 0.88802 0.87550 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 37.16 0.38 -1.35 16 2 C 0.05 0.65 6.36 37.16 0.24 0.89 16 3 O -0.35 -5.93 7.91 -54.80 -0.43 -6.36 16 4 C 0.11 1.72 2.10 -27.88 -0.06 1.66 16 5 H 0.09 1.33 7.07 -51.93 -0.37 0.97 16 6 C 0.52 10.43 6.96 -10.98 -0.08 10.35 16 7 O -0.52 -12.80 16.07 -14.01 -0.23 -13.02 16 8 N -0.58 -10.70 2.47 -176.97 -0.44 -11.14 16 9 C 0.11 1.66 4.99 -5.91 -0.03 1.63 16 10 C -0.17 -2.81 5.64 -29.13 -0.16 -2.98 16 11 C 0.16 3.23 5.63 -5.23 -0.03 3.20 16 12 N -0.59 -14.45 2.53 -172.29 -0.44 -14.88 16 13 C -0.26 -7.10 9.24 -15.06 -0.14 -7.24 16 14 H 0.06 1.62 7.85 -52.49 -0.41 1.21 16 15 C 0.01 0.26 5.03 -17.43 -0.09 0.17 16 16 N -0.90 -26.76 10.91 55.49 0.61 -26.16 16 17 Si 0.90 22.43 29.57 -169.99 -5.03 17.41 16 18 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 C 0.17 4.10 5.15 -2.00 -0.01 4.08 16 22 C 0.09 1.80 5.25 -4.84 -0.03 1.77 16 23 C -0.18 -2.20 4.40 -90.62 -0.40 -2.60 16 24 C -0.18 -1.75 10.00 -26.73 -0.27 -2.02 16 25 C -0.16 -1.80 9.87 -26.73 -0.26 -2.07 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.71 8.03 -51.93 -0.42 0.30 16 30 H 0.05 0.52 5.87 -51.93 -0.30 0.21 16 31 H 0.07 0.84 8.06 -51.93 -0.42 0.42 16 32 H 0.07 0.90 4.54 -51.93 -0.24 0.67 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 1.21 7.85 -51.93 -0.41 0.80 16 35 H 0.03 0.61 7.58 -51.93 -0.39 0.22 16 36 H 0.05 0.92 8.02 -51.93 -0.42 0.50 16 37 H 0.25 7.35 8.31 -40.82 -0.34 7.02 16 38 H 0.04 1.05 7.95 -51.93 -0.41 0.63 16 39 H 0.08 2.17 6.68 -51.93 -0.35 1.83 16 40 H 0.07 1.46 7.31 -51.93 -0.38 1.08 16 41 H 0.06 0.97 7.73 -51.93 -0.40 0.56 16 42 H 0.12 1.37 6.90 -51.93 -0.36 1.02 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.09 0.89 6.04 -51.93 -0.31 0.57 16 45 H 0.11 1.34 7.03 -51.93 -0.36 0.97 16 46 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 353.34 15.07 5.32 5.32 Total: -1.00 -33.13 353.34 -9.18 -42.31 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -7.62 Total: 1.01 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -0.93 Total: 5.51 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -0.27 Total: -52.18 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.66 Total: -19.38 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.13 -9.18 -42.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195873985.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.163 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds