Wall clock time and date at job start Tue Mar 31 2020 03:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42895 * 109.47317 * 2 1 4 4 C 1.42893 * 114.00174 * 183.45052 * 3 2 1 5 5 H 1.09004 * 109.47087 * 21.57177 * 4 3 2 6 6 C 1.50701 * 109.47315 * 141.57210 * 4 3 2 7 7 O 1.21277 * 119.99855 * 12.96327 * 6 4 3 8 8 N 1.34778 * 120.00359 * 192.96555 * 6 4 3 9 9 C 1.48218 * 119.96933 * 355.57614 * 8 6 4 10 10 C 1.47144 * 110.33913 * 102.46382 * 9 8 6 11 11 C 1.53799 * 111.83911 * 58.30128 * 10 9 8 12 12 N 1.43466 * 107.96036 * 281.66837 * 11 10 9 13 13 C 1.36938 * 118.93674 * 273.63039 * 12 11 10 14 14 H 1.07993 * 120.00473 * 29.05109 * 13 12 11 15 15 C 1.38817 * 119.99840 * 209.05329 * 13 12 11 16 16 N 1.31621 * 119.99718 * 10.12279 * 15 13 12 17 17 Si 1.86791 * 120.00110 * 190.12226 * 15 13 12 18 18 H 1.48494 * 109.47222 * 60.00039 * 17 15 13 19 19 H 1.48506 * 109.47464 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47462 * 299.99864 * 17 15 13 21 21 C 1.48861 * 122.12204 * 93.65101 * 12 11 10 22 22 C 1.43617 * 119.97217 * 175.30461 * 8 6 4 23 23 C 1.53002 * 109.47514 * 261.57373 * 4 3 2 24 24 C 1.53000 * 117.49768 * 64.23590 * 23 4 3 25 25 C 1.52998 * 117.49438 * 355.61257 * 23 4 3 26 26 H 1.09005 * 109.47118 * 59.99931 * 1 2 3 27 27 H 1.08997 * 109.47068 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46893 * 300.00004 * 1 2 3 29 29 H 1.09006 * 109.46868 * 240.00235 * 2 1 3 30 30 H 1.09001 * 109.47087 * 120.00812 * 2 1 3 31 31 H 1.08997 * 109.32641 * 222.73008 * 9 8 6 32 32 H 1.08996 * 109.32237 * 342.37958 * 9 8 6 33 33 H 1.09001 * 109.00422 * 178.89876 * 10 9 8 34 34 H 1.08992 * 109.01126 * 297.76779 * 10 9 8 35 35 H 1.09000 * 109.76472 * 41.28153 * 11 10 9 36 36 H 1.09002 * 109.76498 * 162.00123 * 11 10 9 37 37 H 0.97001 * 119.99863 * 179.97438 * 16 15 13 38 38 H 1.09007 * 109.47588 * 80.58061 * 21 12 11 39 39 H 1.08995 * 109.47789 * 200.60065 * 21 12 11 40 40 H 1.08998 * 108.87351 * 31.46807 * 22 8 6 41 41 H 1.09006 * 108.87399 * 149.91031 * 22 8 6 42 42 H 1.09001 * 115.56147 * 209.92579 * 23 4 3 43 43 H 1.08997 * 117.49643 * 145.02519 * 24 23 4 44 44 H 1.08999 * 117.50048 * 0.02562 * 24 23 4 45 45 H 1.08996 * 117.50237 * 0.02562 * 25 23 4 46 46 H 1.08999 * 117.51650 * 214.96571 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4286 1.4608 -0.0786 5 1 3.8436 0.5448 -0.4991 6 6 3.7914 2.6278 -0.9604 7 8 2.9430 3.4335 -1.2795 8 7 5.0588 2.7761 -1.3945 9 6 6.1153 1.8482 -0.9259 10 6 6.4212 0.8539 -1.9665 11 6 6.8780 1.5184 -3.2762 12 7 5.7119 2.0059 -3.9551 13 6 5.0230 1.1580 -4.7807 14 1 5.0249 0.0956 -4.5870 15 6 4.3222 1.6641 -5.8669 16 7 4.4778 2.9219 -6.2222 17 14 3.1586 0.5602 -6.8242 18 1 2.0975 0.0543 -5.9169 19 1 2.5381 1.3346 -7.9290 20 1 3.9155 -0.5862 -7.3883 21 6 5.2270 3.4037 -3.7912 22 6 5.3831 3.8294 -2.3154 23 6 4.0008 1.6834 1.3229 24 6 3.8249 0.5582 2.3446 25 6 3.0063 1.8443 2.4744 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5140 0.8899 31 1 7.0164 2.4156 -0.6931 32 1 5.7712 1.3334 -0.0288 33 1 7.2128 0.1963 -1.6073 34 1 5.5287 0.2601 -2.1635 35 1 7.5489 2.3483 -3.0540 36 1 7.3906 0.7873 -3.9012 37 1 3.9884 3.2754 -6.9814 38 1 5.8123 4.0683 -4.4268 39 1 4.1765 3.4598 -4.0766 40 1 4.7254 4.6778 -2.1265 41 1 6.4141 4.1403 -2.1465 42 1 4.9216 2.2649 1.3681 43 1 4.6301 0.3995 3.0620 44 1 3.3021 -0.3408 2.0183 45 1 1.9446 1.7912 2.2337 46 1 3.2728 2.5315 3.2775 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195873985.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:18 Heat of formation + Delta-G solvation = -38.271648 kcal Electronic energy + Delta-G solvation = -26320.216592 eV Core-core repulsion = 22825.352180 eV Total energy + Delta-G solvation = -3494.864412 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.59633 -39.66260 -38.39103 -36.97299 -36.01577 -33.92377 -33.05417 -32.32128 -30.13971 -28.31392 -27.09734 -25.34460 -24.03063 -23.76178 -22.98375 -21.80029 -21.51347 -20.18962 -18.71448 -18.14048 -18.02654 -17.41066 -17.03719 -16.75782 -16.06120 -15.72669 -15.54758 -15.41017 -15.20105 -14.80679 -14.41130 -14.04753 -13.89407 -13.84402 -13.52093 -13.38802 -13.17453 -13.05443 -12.81707 -12.56201 -12.45828 -12.29812 -12.24916 -12.14989 -12.09578 -11.85754 -11.72294 -11.51954 -11.42372 -11.08050 -10.80956 -10.55364 -10.28390 -9.53771 -8.61907 -7.86642 -5.35733 1.37521 1.41739 1.46434 1.59549 1.91843 2.47317 2.71904 2.99934 3.28615 3.43568 3.66991 3.72030 3.88502 3.99344 4.10899 4.12295 4.22366 4.23850 4.32409 4.34719 4.37182 4.49650 4.57388 4.60829 4.75421 4.82771 4.84510 4.85346 4.95872 4.96052 5.01413 5.03672 5.18446 5.23665 5.28543 5.29973 5.34369 5.53227 5.57952 5.67616 5.83683 6.11093 6.40008 6.51709 7.16011 7.28025 7.93186 8.35951 9.17773 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.014657 B = 0.006071 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.946512 B = 4610.833262 C = 5557.950845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 O -0.382 6.382 4 C 0.115 3.885 5 H 0.094 0.906 6 C 0.506 3.494 7 O -0.584 6.584 8 N -0.582 5.582 9 C 0.109 3.891 10 C -0.160 4.160 11 C 0.153 3.847 12 N -0.603 5.603 13 C -0.257 4.257 14 H 0.063 0.937 15 C -0.052 4.052 16 N -0.937 5.937 17 Si 0.957 3.043 18 H -0.288 1.288 19 H -0.296 1.296 20 H -0.267 1.267 21 C 0.180 3.820 22 C 0.103 3.897 23 C -0.192 4.192 24 C -0.147 4.147 25 C -0.168 4.168 26 H 0.040 0.960 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.037 0.963 35 H 0.053 0.947 36 H 0.039 0.961 37 H 0.246 0.754 38 H 0.017 0.983 39 H 0.019 0.981 40 H 0.056 0.944 41 H 0.093 0.907 42 H 0.127 0.873 43 H 0.124 0.876 44 H 0.099 0.901 45 H 0.088 0.912 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.067 -7.479 19.889 21.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 O -0.301 6.301 4 C 0.054 3.946 5 H 0.111 0.889 6 C 0.295 3.705 7 O -0.464 6.464 8 N -0.314 5.314 9 C -0.011 4.011 10 C -0.200 4.200 11 C 0.026 3.974 12 N -0.326 5.326 13 C -0.388 4.388 14 H 0.081 0.919 15 C -0.247 4.247 16 N -0.583 5.583 17 Si 0.786 3.214 18 H -0.214 1.214 19 H -0.222 1.222 20 H -0.192 1.192 21 C 0.054 3.946 22 C -0.023 4.023 23 C -0.211 4.211 24 C -0.184 4.184 25 C -0.205 4.205 26 H 0.060 0.940 27 H 0.116 0.884 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.035 0.965 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.145 0.855 43 H 0.142 0.858 44 H 0.117 0.883 45 H 0.107 0.893 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.468 -6.806 19.605 20.899 hybrid contribution -0.869 -0.214 -1.634 1.863 sum 1.599 -7.020 17.971 19.360 Atomic orbital electron populations 1.21757 0.92770 1.03563 1.02400 1.22929 0.96696 0.82641 1.00944 1.88005 1.19559 1.28157 1.94358 1.21314 0.82931 0.95960 0.94410 0.88885 1.21057 0.82163 0.86795 0.80525 1.90633 1.49731 1.45918 1.60142 1.47485 1.08241 1.32016 1.43658 1.21263 0.90819 0.91564 0.97449 1.21740 1.01749 0.99077 0.97473 1.20537 0.87965 0.96703 0.92180 1.43831 1.28057 1.08969 1.51749 1.19361 1.25604 0.90576 1.03253 0.91926 1.25823 1.02964 0.97598 0.98286 1.70135 1.44639 1.15106 1.28446 0.85497 0.79281 0.78645 0.78009 1.21436 1.22204 1.19248 1.21396 0.97023 0.85076 0.91074 1.21567 1.01021 0.89733 0.89931 1.22710 1.02379 1.07290 0.88704 1.23183 1.03088 0.92032 1.00098 1.22944 0.97678 1.01137 0.98702 0.94039 0.88388 0.91294 0.94149 0.90245 0.88139 0.87611 0.88000 0.94411 0.92899 0.94246 0.94486 0.96454 0.96194 0.92602 0.88857 0.85548 0.85751 0.88281 0.89304 0.87533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 10.28 71.98 0.74 -2.58 16 2 C 0.04 1.10 6.36 71.98 0.46 1.56 16 3 O -0.38 -12.87 7.91 -130.27 -1.03 -13.90 16 4 C 0.12 3.53 2.10 29.85 0.06 3.60 16 5 H 0.09 2.67 7.07 -2.38 -0.02 2.66 16 6 C 0.51 20.41 6.96 87.66 0.61 21.02 16 7 O -0.58 -29.98 16.07 15.69 0.25 -29.73 16 8 N -0.58 -20.69 2.47 -832.18 -2.05 -22.74 16 9 C 0.11 2.70 4.99 84.23 0.42 3.12 16 10 C -0.16 -4.56 5.64 29.04 0.16 -4.39 16 11 C 0.15 5.72 5.63 87.21 0.49 6.21 16 12 N -0.60 -29.83 2.53 -698.99 -1.77 -31.59 16 13 C -0.26 -14.36 9.24 84.03 0.78 -13.58 16 14 H 0.06 3.40 7.85 -2.91 -0.02 3.38 16 15 C -0.05 -3.02 5.03 84.86 0.43 -2.59 16 16 N -0.94 -58.22 10.91 21.65 0.24 -57.98 16 17 Si 0.96 47.49 29.57 68.60 2.03 49.52 16 18 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 19 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 21 C 0.18 9.20 5.15 86.40 0.44 9.64 16 22 C 0.10 4.10 5.25 87.39 0.46 4.56 16 23 C -0.19 -4.19 4.40 -10.79 -0.05 -4.23 16 24 C -0.15 -2.19 10.00 30.60 0.31 -1.89 16 25 C -0.17 -3.34 9.87 30.60 0.30 -3.04 16 26 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.04 1.09 8.03 -2.38 -0.02 1.07 16 30 H 0.08 1.48 5.87 -2.39 -0.01 1.47 16 31 H 0.10 1.92 8.06 -2.39 -0.02 1.90 16 32 H 0.11 2.04 4.54 -2.39 -0.01 2.03 16 33 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.04 1.30 7.85 -2.39 -0.02 1.28 16 35 H 0.05 1.78 7.58 -2.39 -0.02 1.76 16 36 H 0.04 1.52 8.02 -2.39 -0.02 1.50 16 37 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 38 H 0.02 0.95 7.95 -2.38 -0.02 0.93 16 39 H 0.02 1.21 6.68 -2.39 -0.02 1.19 16 40 H 0.06 2.39 7.31 -2.39 -0.02 2.37 16 41 H 0.09 3.01 7.73 -2.38 -0.02 2.99 16 42 H 0.13 2.48 6.90 -2.39 -0.02 2.46 16 43 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.10 1.39 6.04 -2.39 -0.01 1.38 16 45 H 0.09 2.11 7.03 -2.39 -0.02 2.09 16 46 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -78.79 353.34 4.24 -74.55 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.96 Total: 14.46 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: 5.61 Total: 17.40 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -3.58 Total: -112.31 kcal Atomic # 8 Polarization: -42.85 SS G_CDS: -0.78 Total: -43.63 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -78.79 4.24 -74.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195873985.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.283 kcal (2) G-P(sol) polarization free energy of solvation -78.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds