Wall clock time and date at job start Tue Mar 31 2020 03:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47087 * 2 1 4 4 C 1.42895 * 114.00397 * 184.89282 * 3 2 1 5 5 H 1.09004 * 109.46964 * 344.94774 * 4 3 2 6 6 C 1.50693 * 109.47264 * 224.94737 * 4 3 2 7 7 O 1.21279 * 120.00089 * 351.50518 * 6 4 3 8 8 N 1.34778 * 120.00241 * 171.50567 * 6 4 3 9 9 C 1.48210 * 119.97212 * 184.53512 * 8 6 4 10 10 C 1.47146 * 110.34931 * 102.46148 * 9 8 6 11 11 C 1.53243 * 111.81160 * 58.22208 * 10 9 8 12 12 N 1.43466 * 108.26518 * 281.68632 * 11 10 9 13 13 C 1.36938 * 118.93512 * 273.77796 * 12 11 10 14 14 H 1.08004 * 119.99931 * 14.46365 * 13 12 11 15 15 C 1.38811 * 119.99789 * 194.46554 * 13 12 11 16 16 N 1.31615 * 119.99879 * 213.03752 * 15 13 12 17 17 Si 1.86800 * 119.99890 * 33.03945 * 15 13 12 18 18 H 1.48495 * 109.46980 * 266.72065 * 17 15 13 19 19 H 1.48506 * 109.47049 * 146.72420 * 17 15 13 20 20 H 1.48499 * 109.47128 * 26.72542 * 17 15 13 21 21 C 1.48852 * 122.12360 * 93.49967 * 12 11 10 22 22 C 1.43625 * 119.97133 * 4.50759 * 8 6 4 23 23 C 1.52999 * 109.47510 * 104.94257 * 4 3 2 24 24 C 1.53004 * 117.49718 * 1.95791 * 23 4 3 25 25 C 1.52996 * 59.99939 * 252.50821 * 24 23 4 26 26 H 1.08991 * 109.47244 * 60.00277 * 1 2 3 27 27 H 1.09010 * 109.46884 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47046 * 299.99849 * 1 2 3 29 29 H 1.09000 * 109.47046 * 240.00151 * 2 1 3 30 30 H 1.08998 * 109.47629 * 119.99843 * 2 1 3 31 31 H 1.09000 * 109.32132 * 222.72967 * 9 8 6 32 32 H 1.09001 * 109.32482 * 342.36547 * 9 8 6 33 33 H 1.08997 * 109.00589 * 178.90265 * 10 9 8 34 34 H 1.08998 * 109.00516 * 297.76550 * 10 9 8 35 35 H 1.08993 * 109.49064 * 162.03933 * 11 10 9 36 36 H 1.09007 * 109.73125 * 41.46248 * 11 10 9 37 37 H 0.97002 * 120.00657 * 5.06293 * 16 15 13 38 38 H 1.09010 * 109.47717 * 80.87814 * 21 12 11 39 39 H 1.08993 * 109.48422 * 200.89728 * 21 12 11 40 40 H 1.08997 * 108.87206 * 149.91556 * 22 8 6 41 41 H 1.08997 * 108.87200 * 31.47437 * 22 8 6 42 42 H 1.09002 * 115.55381 * 147.65986 * 23 4 3 43 43 H 1.08998 * 117.49848 * 359.97438 * 24 23 4 44 44 H 1.08998 * 117.49776 * 145.01725 * 24 23 4 45 45 H 1.09007 * 117.50035 * 252.50897 * 25 24 23 46 46 H 1.09003 * 117.52327 * 107.48445 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4263 1.4618 -0.1113 5 1 3.8859 0.4945 0.0918 6 6 3.9282 2.4754 0.8844 7 8 3.1402 3.1544 1.5081 8 7 5.2527 2.6275 1.0820 9 6 5.7434 3.5513 2.1319 10 6 6.1759 2.7950 3.3177 11 6 7.2781 1.7857 2.9784 12 7 6.6673 0.6433 2.3619 13 6 6.1799 -0.3582 3.1586 14 1 6.0425 -0.1882 4.2163 15 6 5.8626 -1.5917 2.6067 16 7 4.8659 -2.2962 3.0994 17 14 6.8500 -2.2518 1.1650 18 1 6.1858 -1.8685 -0.1067 19 1 6.9292 -3.7320 1.2555 20 1 8.2200 -1.6797 1.2000 21 6 6.5410 0.5143 0.8843 22 6 6.1874 1.8937 0.2753 23 6 3.7923 1.9129 -1.5268 24 6 2.6438 2.1916 -2.4985 25 6 3.5077 0.9411 -2.6737 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 6.5850 4.1247 1.7431 32 1 4.9421 4.2338 2.4151 33 1 6.5501 3.4927 4.0668 34 1 5.3204 2.2588 3.7282 35 1 7.7877 1.4826 3.8930 36 1 7.9923 2.2381 2.2903 37 1 4.3070 -1.9227 3.7987 38 1 7.4857 0.1646 0.4679 39 1 5.7528 -0.2005 0.6479 40 1 7.1012 2.4791 0.1739 41 1 5.7562 1.7422 -0.7142 42 1 4.6817 2.5381 -1.6058 43 1 1.6275 2.0531 -2.1295 44 1 2.7774 3.0003 -3.2169 45 1 4.2097 0.9271 -3.5075 46 1 3.0602 -0.0199 -2.4199 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195873989.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:22 Heat of formation + Delta-G solvation = -12.271766 kcal Electronic energy + Delta-G solvation = -26769.200622 eV Core-core repulsion = 23275.463650 eV Total energy + Delta-G solvation = -3493.736972 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.30712 -38.36448 -36.96881 -35.93368 -34.32417 -33.00832 -31.45940 -31.15097 -28.23268 -27.41037 -25.67269 -23.29111 -22.91602 -22.44740 -22.04942 -20.72442 -19.90101 -19.00427 -17.53783 -16.71413 -16.66026 -16.09788 -15.74870 -15.07415 -14.86393 -14.64451 -14.49141 -13.92623 -13.63000 -13.37462 -13.08360 -12.81169 -12.77688 -12.48176 -12.35062 -12.16402 -11.90687 -11.55126 -11.51752 -11.48010 -11.04968 -11.02380 -10.97375 -10.52248 -10.40102 -10.30671 -10.13684 -9.91414 -9.85987 -9.62531 -9.36463 -8.92746 -8.42585 -8.14679 -7.08012 -6.39845 -3.19983 2.99904 3.14520 3.31600 3.49688 3.63219 3.79367 4.10335 4.56012 4.62398 4.76627 4.86153 4.98662 5.07381 5.21727 5.26037 5.32350 5.34875 5.41896 5.48493 5.54199 5.57732 5.65466 5.72871 5.76692 5.81376 5.83716 5.86612 5.93065 6.03810 6.11981 6.13700 6.24569 6.26817 6.27709 6.32525 6.44056 6.50089 6.68099 6.87625 7.10370 7.31390 7.84637 7.99278 8.39514 8.63396 9.00349 9.66570 10.10849 11.05819 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.012546 B = 0.007680 C = 0.006352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.207647 B = 3644.933996 C = 4406.678712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 O -0.353 6.353 4 C 0.104 3.896 5 H 0.097 0.903 6 C 0.526 3.474 7 O -0.532 6.532 8 N -0.585 5.585 9 C 0.130 3.870 10 C -0.169 4.169 11 C 0.164 3.836 12 N -0.596 5.596 13 C -0.353 4.353 14 H 0.071 0.929 15 C -0.012 4.012 16 N -0.905 5.905 17 Si 1.036 2.964 18 H -0.297 1.297 19 H -0.299 1.299 20 H -0.288 1.288 21 C 0.105 3.895 22 C 0.079 3.921 23 C -0.179 4.179 24 C -0.159 4.159 25 C -0.175 4.175 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.035 0.965 37 H 0.265 0.735 38 H 0.037 0.963 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.119 0.881 43 H 0.106 0.894 44 H 0.091 0.909 45 H 0.097 0.903 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.440 7.990 -11.013 13.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.028 4.028 3 O -0.271 6.271 4 C 0.043 3.957 5 H 0.114 0.886 6 C 0.313 3.687 7 O -0.408 6.408 8 N -0.319 5.319 9 C 0.009 3.991 10 C -0.210 4.210 11 C 0.035 3.965 12 N -0.319 5.319 13 C -0.480 4.480 14 H 0.089 0.911 15 C -0.214 4.214 16 N -0.543 5.543 17 Si 0.868 3.132 18 H -0.225 1.225 19 H -0.227 1.227 20 H -0.214 1.214 21 C -0.021 4.021 22 C -0.047 4.047 23 C -0.198 4.198 24 C -0.195 4.195 25 C -0.212 4.212 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.136 0.864 43 H 0.125 0.875 44 H 0.110 0.890 45 H 0.115 0.885 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.798 7.210 -11.619 13.697 hybrid contribution 0.245 0.893 1.068 1.414 sum -0.554 8.103 -10.550 13.314 Atomic orbital electron populations 1.21698 0.93667 1.02090 1.02851 1.22705 0.95599 0.83627 1.00830 1.87956 1.18677 1.26364 1.94139 1.21355 0.83593 0.98975 0.91821 0.88564 1.20290 0.82091 0.83304 0.83003 1.90631 1.54935 1.45901 1.49369 1.47265 1.04956 1.43376 1.36266 1.20566 0.98821 0.91477 0.88261 1.21752 1.02580 0.99566 0.97136 1.20185 0.92212 0.87663 0.96401 1.43931 1.68243 1.19660 1.00070 1.20189 1.41829 0.92717 0.93313 0.91116 1.25856 0.98772 0.93758 1.02979 1.70848 1.13479 1.42510 1.27504 0.84302 0.77160 0.75856 0.75909 1.22495 1.22694 1.21413 1.22509 0.99352 0.95251 0.85000 1.22136 0.93389 0.94758 0.94453 1.22792 1.01461 1.05151 0.90368 1.22901 0.97059 0.98850 1.00734 1.23044 1.03659 0.94944 0.99584 0.92218 0.91103 0.91750 0.93372 0.92313 0.91938 0.90223 0.92381 0.91113 0.93229 0.94654 0.92495 0.94587 0.91009 0.91126 0.89919 0.86372 0.87536 0.89014 0.88455 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 10.28 37.16 0.38 -1.53 16 2 C 0.05 0.78 6.39 37.16 0.24 1.02 16 3 O -0.35 -6.45 7.89 -55.00 -0.43 -6.89 16 4 C 0.10 1.86 2.22 -27.89 -0.06 1.79 16 5 H 0.10 1.86 6.19 -51.93 -0.32 1.54 16 6 C 0.53 10.59 7.03 -10.99 -0.08 10.52 16 7 O -0.53 -12.47 15.94 -14.21 -0.23 -12.70 16 8 N -0.59 -10.52 2.46 -176.66 -0.43 -10.95 16 9 C 0.13 2.16 5.72 -5.91 -0.03 2.13 16 10 C -0.17 -3.06 5.63 -29.42 -0.17 -3.22 16 11 C 0.16 3.15 5.59 -5.52 -0.03 3.12 16 12 N -0.60 -13.61 2.44 -172.34 -0.42 -14.03 16 13 C -0.35 -9.60 9.53 -15.06 -0.14 -9.74 16 14 H 0.07 2.10 8.06 -52.48 -0.42 1.67 16 15 C -0.01 -0.33 5.00 -17.43 -0.09 -0.42 16 16 N -0.90 -27.19 13.70 55.49 0.76 -26.43 16 17 Si 1.04 24.89 24.56 -169.99 -4.18 20.71 16 18 H -0.30 -6.52 6.54 56.52 0.37 -6.15 16 19 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 20 H -0.29 -6.63 6.86 56.52 0.39 -6.25 16 21 C 0.11 2.12 4.45 -1.75 -0.01 2.12 16 22 C 0.08 1.26 4.78 -4.58 -0.02 1.24 16 23 C -0.18 -2.50 4.42 -90.62 -0.40 -2.90 16 24 C -0.16 -1.96 9.86 -26.73 -0.26 -2.22 16 25 C -0.18 -2.07 10.24 -26.73 -0.27 -2.34 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.68 6.58 -51.93 -0.34 0.34 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.85 8.05 -51.93 -0.42 0.43 16 32 H 0.08 1.39 7.08 -51.93 -0.37 1.02 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.58 7.90 -51.93 -0.41 1.17 16 35 H 0.05 0.98 8.02 -51.93 -0.42 0.57 16 36 H 0.04 0.59 7.58 -51.92 -0.39 0.20 16 37 H 0.27 8.06 8.73 -40.82 -0.36 7.70 16 38 H 0.04 0.71 6.49 -51.92 -0.34 0.37 16 39 H 0.07 1.60 3.75 -51.93 -0.19 1.41 16 40 H 0.07 0.97 7.73 -51.93 -0.40 0.57 16 41 H 0.08 1.16 4.09 -51.93 -0.21 0.95 16 42 H 0.12 1.52 6.23 -51.93 -0.32 1.19 16 43 H 0.11 1.43 7.02 -51.93 -0.36 1.07 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.10 0.96 8.14 -51.92 -0.42 0.53 16 46 H 0.09 1.15 6.58 -51.93 -0.34 0.81 16 LS Contribution 345.72 15.07 5.21 5.21 Total: -1.00 -32.50 345.72 -8.09 -40.60 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -7.42 Total: 4.91 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -0.95 Total: -0.43 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.09 Total: -51.41 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.66 Total: -19.58 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -4.18 Total: 20.71 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.50 -8.09 -40.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195873989.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.326 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds