Wall clock time and date at job start Tue Mar 31 2020 03:28:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 O 1.42908 * 109.46775 * 2 1
4 4 C 1.42905 * 113.99551 * 180.02562 * 3 2 1
5 5 C 1.53001 * 109.46453 * 180.02562 * 4 3 2
6 6 C 1.50711 * 109.46513 * 179.97438 * 5 4 3
7 7 O 1.21276 * 120.00251 * 0.02562 * 6 5 4
8 8 N 1.34775 * 119.99636 * 180.02562 * 6 5 4
9 9 C 1.46500 * 119.99863 * 180.02562 * 8 6 5
10 10 H 1.09002 * 112.88687 * 25.32963 * 9 8 6
11 11 C 1.53950 * 113.65970 * 253.98734 * 9 8 6
12 12 C 1.53954 * 87.29307 * 270.16789 * 11 9 8
13 13 H 1.08999 * 113.66372 * 220.79322 * 12 11 9
14 14 N 1.46497 * 113.66175 * 89.83246 * 12 11 9
15 15 C 1.36939 * 120.00391 * 104.50649 * 14 12 11
16 16 H 1.07997 * 119.99329 * 359.97438 * 15 14 12
17 17 C 1.38805 * 120.00343 * 180.02562 * 15 14 12
18 18 N 1.31625 * 120.00181 * 359.97438 * 17 15 14
19 19 Si 1.86803 * 120.00206 * 180.02562 * 17 15 14
20 20 H 1.48497 * 109.46707 * 359.97438 * 19 17 15
21 21 H 1.48491 * 109.47393 * 119.99710 * 19 17 15
22 22 H 1.48507 * 109.46792 * 239.99950 * 19 17 15
23 23 C 1.52908 * 113.74717 * 156.75621 * 9 8 6
24 24 C 1.52913 * 121.14282 * 323.86373 * 23 9 8
25 25 C 1.53952 * 86.78076 * 209.37547 * 24 23 9
26 26 C 1.52903 * 121.13961 * 215.29797 * 23 9 8
27 27 H 1.08998 * 109.46949 * 179.97438 * 1 2 3
28 28 H 1.09001 * 109.47203 * 299.99538 * 1 2 3
29 29 H 1.08997 * 109.47082 * 59.99673 * 1 2 3
30 30 H 1.09001 * 109.47203 * 240.00462 * 2 1 3
31 31 H 1.08993 * 109.47529 * 120.00170 * 2 1 3
32 32 H 1.09001 * 109.47088 * 60.00480 * 4 3 2
33 33 H 1.09001 * 109.46823 * 300.00027 * 4 3 2
34 34 H 1.09001 * 109.47339 * 60.00319 * 5 4 3
35 35 H 1.09001 * 109.47370 * 299.99376 * 5 4 3
36 36 H 0.96999 * 120.00088 * 359.97438 * 8 6 5
37 37 H 1.08998 * 113.58557 * 24.76836 * 11 9 8
38 38 H 1.08998 * 113.57793 * 155.57035 * 11 9 8
39 39 H 0.97007 * 120.00201 * 284.50068 * 14 12 11
40 40 H 0.96999 * 120.00144 * 179.97438 * 18 17 15
41 41 H 1.09000 * 113.66060 * 323.84600 * 24 23 9
42 42 H 1.08992 * 113.66004 * 94.90121 * 24 23 9
43 43 H 1.08997 * 113.58088 * 270.13152 * 25 24 23
44 44 H 1.09003 * 113.57703 * 139.33906 * 25 24 23
45 45 H 1.09001 * 113.66279 * 265.10113 * 26 23 9
46 46 H 1.09004 * 113.66541 * 36.15143 * 26 23 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3474 0.0000
4 6 3.4309 1.4602 -0.0006
5 6 3.8253 2.9385 0.0001
6 6 5.3277 3.0575 0.0001
7 8 6.0151 2.0584 -0.0008
8 7 5.9072 4.2743 0.0012
9 6 7.3676 4.3900 0.0007
10 1 7.8617 3.5191 -0.4301
11 6 7.9534 4.8251 1.3563
12 6 7.8046 6.2787 0.8715
13 1 8.6478 6.9166 1.1363
14 7 6.5100 6.8792 1.2022
15 6 6.4175 7.7889 2.2216
16 1 7.2990 8.0633 2.7819
17 6 5.1907 8.3574 2.5353
18 7 4.1163 8.0226 1.8527
19 14 5.0647 9.5990 3.9254
20 1 6.4056 9.8025 4.5302
21 1 4.5607 10.8899 3.3920
22 1 4.1276 9.0908 4.9594
23 6 7.8796 5.7213 -0.5504
24 6 7.1727 6.4206 -1.7121
25 6 8.5484 7.0025 -2.0851
26 6 9.1736 5.7960 -1.3616
27 1 -0.3633 -1.0277 -0.0005
28 1 -0.3634 0.5138 0.8900
29 1 -0.3633 0.5139 -0.8899
30 1 1.8934 -0.5138 -0.8900
31 1 1.8934 -0.5138 0.8899
32 1 3.8333 0.9768 -0.8909
33 1 3.8340 0.9765 0.8892
34 1 3.4229 3.4215 0.8906
35 1 3.4221 3.4226 -0.8894
36 1 5.3574 5.0734 0.0016
37 1 7.3152 4.5812 2.2056
38 1 8.9890 4.5181 1.5024
39 1 5.7181 6.6325 0.6991
40 1 3.2589 8.4196 2.0722
41 1 6.7717 5.7337 -2.4574
42 1 6.4506 7.1731 -1.3955
43 1 8.7624 7.9575 -1.6052
44 1 8.7401 7.0150 -3.1580
45 1 10.0499 6.0496 -0.7651
46 1 9.3349 4.9335 -2.0084
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001202608408.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:28:29
Heat of formation + Delta-G solvation = -35.823219 kcal
Electronic energy + Delta-G solvation = -24686.895361 eV
Core-core repulsion = 21192.137121 eV
Total energy + Delta-G solvation = -3494.758240 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 296.189 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-40.61668 -38.97881 -37.81784 -35.25461 -33.66539 -32.63152 -32.04851 -30.28589
-29.67181 -25.50687 -24.92871 -24.16098 -23.67135 -22.87022 -22.12725 -20.38483
-19.85657 -18.09716 -17.17550 -17.03922 -16.42215 -15.94492 -15.79367 -15.17525
-15.02704 -14.61372 -14.39189 -14.27640 -13.75926 -13.51466 -13.10862 -12.92940
-12.60612 -12.43325 -12.13976 -12.02536 -11.85296 -11.79027 -11.50365 -11.35266
-11.09812 -11.05688 -10.94991 -10.88072 -10.69819 -10.18264 -10.08941 -9.84815
-9.73667 -9.61629 -9.49710 -9.41008 -8.91025 -8.48031 -7.08269 -5.89130
-3.17751 2.92023 3.18778 3.37930 3.44567 3.46160 3.92123 4.47871
4.76682 4.91419 4.91969 4.97793 5.00443 5.09148 5.12624 5.17292
5.21722 5.30139 5.35451 5.41264 5.50496 5.62377 5.67724 5.75420
5.84533 5.87810 5.89487 5.94917 5.98571 5.99721 6.00571 6.03025
6.15490 6.28247 6.35426 6.50746 6.62027 6.69097 6.79288 6.94840
7.11321 7.16587 7.64164 7.90922 8.30207 8.55154 9.41268 9.95351
10.29259 11.33633
Molecular weight = 296.19amu
Principal moments of inertia in cm(-1)
A = 0.010566 B = 0.004549 C = 0.003451
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2649.263898 B = 6153.355405 C = 8112.101427
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.059 3.941
3 O -0.392 6.392
4 C 0.082 3.918
5 C -0.142 4.142
6 C 0.522 3.478
7 O -0.558 6.558
8 N -0.694 5.694
9 C 0.138 3.862
10 H 0.089 0.911
11 C -0.186 4.186
12 C 0.191 3.809
13 H 0.064 0.936
14 N -0.700 5.700
15 C -0.242 4.242
16 H 0.074 0.926
17 C -0.009 4.009
18 N -0.933 5.933
19 Si 0.908 3.092
20 H -0.280 1.280
21 H -0.291 1.291
22 H -0.291 1.291
23 C -0.128 4.128
24 C -0.127 4.127
25 C -0.134 4.134
26 C -0.106 4.106
27 H 0.068 0.932
28 H 0.063 0.937
29 H 0.062 0.938
30 H 0.047 0.953
31 H 0.048 0.952
32 H 0.055 0.945
33 H 0.056 0.944
34 H 0.107 0.893
35 H 0.101 0.899
36 H 0.409 0.591
37 H 0.072 0.928
38 H 0.076 0.924
39 H 0.380 0.620
40 H 0.257 0.743
41 H 0.072 0.928
42 H 0.080 0.920
43 H 0.081 0.919
44 H 0.059 0.941
45 H 0.068 0.932
46 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.882 -10.784 -7.344 13.077
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.018 4.018
3 O -0.311 6.311
4 C 0.005 3.995
5 C -0.182 4.182
6 C 0.309 3.691
7 O -0.438 6.438
8 N -0.346 5.346
9 C 0.032 3.968
10 H 0.107 0.893
11 C -0.228 4.228
12 C 0.079 3.921
13 H 0.082 0.918
14 N -0.340 5.340
15 C -0.373 4.373
16 H 0.091 0.909
17 C -0.205 4.205
18 N -0.581 5.581
19 Si 0.739 3.261
20 H -0.205 1.205
21 H -0.218 1.218
22 H -0.218 1.218
23 C -0.130 4.130
24 C -0.164 4.164
25 C -0.172 4.172
26 C -0.145 4.145
27 H 0.087 0.913
28 H 0.082 0.918
29 H 0.081 0.919
30 H 0.065 0.935
31 H 0.066 0.934
32 H 0.073 0.927
33 H 0.074 0.926
34 H 0.125 0.875
35 H 0.119 0.881
36 H 0.247 0.753
37 H 0.090 0.910
38 H 0.094 0.906
39 H 0.215 0.785
40 H 0.066 0.934
41 H 0.091 0.909
42 H 0.098 0.902
43 H 0.099 0.901
44 H 0.078 0.922
45 H 0.086 0.914
46 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 1.230 -11.162 -7.186 13.331
hybrid contribution -0.536 0.722 0.694 1.136
sum 0.694 -10.440 -6.492 12.313
Atomic orbital electron populations
1.21747 0.93830 1.02040 1.03241 1.22425 0.95436 0.83873 1.00075
1.87842 1.21371 1.26385 1.95534 1.22089 0.80364 0.95667 1.01380
1.21474 0.92765 0.97732 1.06223 1.20306 0.89905 0.83356 0.75572
1.90651 1.65460 1.36571 1.51073 1.45710 1.07221 1.08329 1.73330
1.21619 0.80156 0.97200 0.97794 0.89262 1.24272 1.00009 1.01235
0.97259 1.20871 0.90423 0.91501 0.89313 0.91787 1.42107 1.03576
1.48957 1.39333 1.19302 0.94158 1.15596 1.08200 0.90854 1.24721
0.95559 1.00545 0.99716 1.69626 0.98898 1.46948 1.42589 0.86098
0.77444 0.80896 0.81614 1.20530 1.21818 1.21833 1.23513 0.97472
0.95871 0.96129 1.22578 0.97068 0.99853 0.96925 1.22751 0.96989
0.98062 0.99368 1.22513 0.95697 0.98404 0.97854 0.91269 0.91757
0.91854 0.93500 0.93421 0.92684 0.92555 0.87515 0.88083 0.75306
0.90961 0.90559 0.78462 0.93353 0.90945 0.90182 0.90069 0.92186
0.91359 0.90334
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.33 10.28 37.16 0.38 -0.95 16
2 C 0.06 0.62 6.66 37.16 0.25 0.87 16
3 O -0.39 -5.38 10.34 -35.23 -0.36 -5.74 16
4 C 0.08 1.13 5.23 37.16 0.19 1.33 16
5 C -0.14 -2.05 6.07 -27.88 -0.17 -2.22 16
6 C 0.52 8.84 7.83 -10.98 -0.09 8.75 16
7 O -0.56 -10.76 15.60 5.56 0.09 -10.67 16
8 N -0.69 -11.86 4.93 -53.37 -0.26 -12.12 16
9 C 0.14 2.32 4.10 -67.48 -0.28 2.04 16
10 H 0.09 1.52 7.50 -51.93 -0.39 1.13 16
11 C -0.19 -3.31 7.68 -25.75 -0.20 -3.51 16
12 C 0.19 3.63 4.35 -67.48 -0.29 3.34 16
13 H 0.06 1.23 8.12 -51.93 -0.42 0.81 16
14 N -0.70 -16.12 4.77 -52.99 -0.25 -16.37 16
15 C -0.24 -6.34 9.98 -15.06 -0.15 -6.49 16
16 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16
17 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16
18 N -0.93 -26.33 13.06 55.49 0.72 -25.61 16
19 Si 0.91 21.64 29.55 -169.99 -5.02 16.61 16
20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16
22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
23 C -0.13 -2.01 0.77 -154.71 -0.12 -2.13 16
24 C -0.13 -1.95 7.22 -26.28 -0.19 -2.14 16
25 C -0.13 -1.81 8.08 -25.75 -0.21 -2.02 16
26 C -0.11 -1.40 7.84 -26.29 -0.21 -1.61 16
27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16
31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
32 H 0.05 0.74 8.10 -51.93 -0.42 0.32 16
33 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16
34 H 0.11 1.59 8.14 -51.93 -0.42 1.16 16
35 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16
36 H 0.41 7.32 6.21 -40.82 -0.25 7.07 16
37 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16
38 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16
39 H 0.38 8.97 5.12 -40.82 -0.21 8.76 16
40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16
41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16
42 H 0.08 1.43 7.51 -51.93 -0.39 1.04 16
43 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16
44 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16
45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16
46 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16
LS Contribution 371.94 15.07 5.61 5.61
Total: -1.00 -29.49 371.94 -8.63 -38.12
By element:
Atomic # 1 Polarization: 23.24 SS G_CDS: -7.97 Total: 15.27 kcal
Atomic # 6 Polarization: -3.92 SS G_CDS: -1.17 Total: -5.09 kcal
Atomic # 7 Polarization: -54.31 SS G_CDS: 0.21 Total: -54.10 kcal
Atomic # 8 Polarization: -16.14 SS G_CDS: -0.28 Total: -16.41 kcal
Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal
Total LS contribution 5.61 Total: 5.61 kcal
Total: -29.49 -8.63 -38.12 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001202608408.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.296 kcal
(2) G-P(sol) polarization free energy of solvation -29.494 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.198 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.119 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.823 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds