Wall clock time and date at job start Tue Mar 31 2020 03:28:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 O 1.42908 * 109.46775 * 2 1
4 4 C 1.42905 * 113.99551 * 180.02562 * 3 2 1
5 5 C 1.53001 * 109.46453 * 180.02562 * 4 3 2
6 6 C 1.50711 * 109.46513 * 179.97438 * 5 4 3
7 7 O 1.21276 * 120.00251 * 0.02562 * 6 5 4
8 8 N 1.34775 * 119.99636 * 180.02562 * 6 5 4
9 9 C 1.46500 * 119.99863 * 180.02562 * 8 6 5
10 10 H 1.09002 * 112.88687 * 25.32963 * 9 8 6
11 11 C 1.53950 * 113.65970 * 253.98734 * 9 8 6
12 12 C 1.53954 * 87.29307 * 270.16789 * 11 9 8
13 13 H 1.08999 * 113.66372 * 220.79322 * 12 11 9
14 14 N 1.46497 * 113.66175 * 89.83246 * 12 11 9
15 15 C 1.36939 * 120.00391 * 104.50649 * 14 12 11
16 16 H 1.07997 * 119.99329 * 359.97438 * 15 14 12
17 17 C 1.38805 * 120.00343 * 180.02562 * 15 14 12
18 18 N 1.31625 * 120.00181 * 359.97438 * 17 15 14
19 19 Si 1.86803 * 120.00206 * 180.02562 * 17 15 14
20 20 H 1.48497 * 109.46707 * 359.97438 * 19 17 15
21 21 H 1.48491 * 109.47393 * 119.99710 * 19 17 15
22 22 H 1.48507 * 109.46792 * 239.99950 * 19 17 15
23 23 C 1.52908 * 113.74717 * 156.75621 * 9 8 6
24 24 C 1.52913 * 121.14282 * 323.86373 * 23 9 8
25 25 C 1.53952 * 86.78076 * 209.37547 * 24 23 9
26 26 C 1.52903 * 121.13961 * 215.29797 * 23 9 8
27 27 H 1.08998 * 109.46949 * 179.97438 * 1 2 3
28 28 H 1.09001 * 109.47203 * 299.99538 * 1 2 3
29 29 H 1.08997 * 109.47082 * 59.99673 * 1 2 3
30 30 H 1.09001 * 109.47203 * 240.00462 * 2 1 3
31 31 H 1.08993 * 109.47529 * 120.00170 * 2 1 3
32 32 H 1.09001 * 109.47088 * 60.00480 * 4 3 2
33 33 H 1.09001 * 109.46823 * 300.00027 * 4 3 2
34 34 H 1.09001 * 109.47339 * 60.00319 * 5 4 3
35 35 H 1.09001 * 109.47370 * 299.99376 * 5 4 3
36 36 H 0.96999 * 120.00088 * 359.97438 * 8 6 5
37 37 H 1.08998 * 113.58557 * 24.76836 * 11 9 8
38 38 H 1.08998 * 113.57793 * 155.57035 * 11 9 8
39 39 H 0.97007 * 120.00201 * 284.50068 * 14 12 11
40 40 H 0.96999 * 120.00144 * 179.97438 * 18 17 15
41 41 H 1.09000 * 113.66060 * 323.84600 * 24 23 9
42 42 H 1.08992 * 113.66004 * 94.90121 * 24 23 9
43 43 H 1.08997 * 113.58088 * 270.13152 * 25 24 23
44 44 H 1.09003 * 113.57703 * 139.33906 * 25 24 23
45 45 H 1.09001 * 113.66279 * 265.10113 * 26 23 9
46 46 H 1.09004 * 113.66541 * 36.15143 * 26 23 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3474 0.0000
4 6 3.4309 1.4602 -0.0006
5 6 3.8253 2.9385 0.0001
6 6 5.3277 3.0575 0.0001
7 8 6.0151 2.0584 -0.0008
8 7 5.9072 4.2743 0.0012
9 6 7.3676 4.3900 0.0007
10 1 7.8617 3.5191 -0.4301
11 6 7.9534 4.8251 1.3563
12 6 7.8046 6.2787 0.8715
13 1 8.6478 6.9166 1.1363
14 7 6.5100 6.8792 1.2022
15 6 6.4175 7.7889 2.2216
16 1 7.2990 8.0633 2.7819
17 6 5.1907 8.3574 2.5353
18 7 4.1163 8.0226 1.8527
19 14 5.0647 9.5990 3.9254
20 1 6.4056 9.8025 4.5302
21 1 4.5607 10.8899 3.3920
22 1 4.1276 9.0908 4.9594
23 6 7.8796 5.7213 -0.5504
24 6 7.1727 6.4206 -1.7121
25 6 8.5484 7.0025 -2.0851
26 6 9.1736 5.7960 -1.3616
27 1 -0.3633 -1.0277 -0.0005
28 1 -0.3634 0.5138 0.8900
29 1 -0.3633 0.5139 -0.8899
30 1 1.8934 -0.5138 -0.8900
31 1 1.8934 -0.5138 0.8899
32 1 3.8333 0.9768 -0.8909
33 1 3.8340 0.9765 0.8892
34 1 3.4229 3.4215 0.8906
35 1 3.4221 3.4226 -0.8894
36 1 5.3574 5.0734 0.0016
37 1 7.3152 4.5812 2.2056
38 1 8.9890 4.5181 1.5024
39 1 5.7181 6.6325 0.6991
40 1 3.2589 8.4196 2.0722
41 1 6.7717 5.7337 -2.4574
42 1 6.4506 7.1731 -1.3955
43 1 8.7624 7.9575 -1.6052
44 1 8.7401 7.0150 -3.1580
45 1 10.0499 6.0496 -0.7651
46 1 9.3349 4.9335 -2.0084
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001202608408.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:28:28
Heat of formation + Delta-G solvation = -53.715393 kcal
Electronic energy + Delta-G solvation = -24687.671224 eV
Core-core repulsion = 21192.137121 eV
Total energy + Delta-G solvation = -3495.534103 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 296.189 amu
Computer time = 1.13 seconds
Orbital eigenvalues (eV)
-41.97684 -40.29211 -38.87202 -36.65002 -35.39790 -33.96909 -33.28275 -31.78872
-30.98678 -26.77602 -26.52224 -25.49126 -25.05214 -23.68802 -23.61473 -21.68823
-21.22152 -19.67917 -18.73548 -18.38485 -17.47748 -17.11109 -17.08534 -16.69015
-16.29019 -16.11040 -15.79554 -15.51507 -15.13083 -14.84282 -14.62010 -14.44062
-13.83897 -13.44324 -13.26838 -13.21095 -13.10100 -13.03322 -12.84277 -12.74077
-12.67980 -12.51706 -12.12356 -12.05805 -12.01709 -11.93039 -11.82571 -11.30360
-11.19211 -10.93016 -10.81819 -10.64954 -10.60761 -9.86789 -8.98916 -7.95327
-5.22174 1.47803 1.49483 1.55323 1.57924 1.97467 2.54994 2.83944
3.37893 3.42341 3.67383 3.73301 3.82138 3.94642 4.00172 4.03040
4.06603 4.16862 4.20476 4.28505 4.37389 4.44086 4.49225 4.60063
4.67146 4.71985 4.78347 4.82751 4.88552 4.90689 4.92960 5.00639
5.03342 5.13508 5.14604 5.22149 5.27061 5.27206 5.53072 5.60027
5.62988 5.70411 6.19556 6.28367 6.51685 7.16376 7.35506 8.08414
8.32573 9.27701
Molecular weight = 296.19amu
Principal moments of inertia in cm(-1)
A = 0.010566 B = 0.004549 C = 0.003451
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2649.263898 B = 6153.355405 C = 8112.101427
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.048 3.952
3 O -0.409 6.409
4 C 0.089 3.911
5 C -0.137 4.137
6 C 0.522 3.478
7 O -0.581 6.581
8 N -0.696 5.696
9 C 0.138 3.862
10 H 0.095 0.905
11 C -0.179 4.179
12 C 0.177 3.823
13 H 0.062 0.938
14 N -0.709 5.709
15 C -0.241 4.241
16 H 0.074 0.926
17 C -0.065 4.065
18 N -0.962 5.962
19 Si 0.966 3.034
20 H -0.270 1.270
21 H -0.294 1.294
22 H -0.297 1.297
23 C -0.118 4.118
24 C -0.128 4.128
25 C -0.128 4.128
26 C -0.093 4.093
27 H 0.093 0.907
28 H 0.056 0.944
29 H 0.060 0.940
30 H 0.059 0.941
31 H 0.053 0.947
32 H 0.059 0.941
33 H 0.049 0.951
34 H 0.100 0.900
35 H 0.116 0.884
36 H 0.405 0.595
37 H 0.041 0.959
38 H 0.102 0.898
39 H 0.375 0.625
40 H 0.252 0.748
41 H 0.085 0.915
42 H 0.048 0.952
43 H 0.070 0.930
44 H 0.084 0.916
45 H 0.080 0.920
46 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.952 -11.479 -8.288 14.292
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.028 4.028
3 O -0.329 6.329
4 C 0.012 3.988
5 C -0.176 4.176
6 C 0.310 3.690
7 O -0.462 6.462
8 N -0.346 5.346
9 C 0.033 3.967
10 H 0.113 0.887
11 C -0.221 4.221
12 C 0.066 3.934
13 H 0.080 0.920
14 N -0.348 5.348
15 C -0.372 4.372
16 H 0.092 0.908
17 C -0.258 4.258
18 N -0.612 5.612
19 Si 0.796 3.204
20 H -0.194 1.194
21 H -0.221 1.221
22 H -0.225 1.225
23 C -0.120 4.120
24 C -0.166 4.166
25 C -0.165 4.165
26 C -0.131 4.131
27 H 0.112 0.888
28 H 0.075 0.925
29 H 0.079 0.921
30 H 0.077 0.923
31 H 0.071 0.929
32 H 0.078 0.922
33 H 0.067 0.933
34 H 0.118 0.882
35 H 0.134 0.866
36 H 0.242 0.758
37 H 0.060 0.940
38 H 0.120 0.880
39 H 0.210 0.790
40 H 0.061 0.939
41 H 0.103 0.897
42 H 0.067 0.933
43 H 0.089 0.911
44 H 0.102 0.898
45 H 0.098 0.902
46 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges 2.344 -11.870 -8.133 14.578
hybrid contribution -0.832 0.889 0.987 1.568
sum 1.513 -10.980 -7.146 13.188
Atomic orbital electron populations
1.21770 0.92509 1.03526 1.02759 1.22706 0.96565 0.82591 1.00958
1.87821 1.20985 1.28483 1.95639 1.21967 0.80760 0.94895 1.01219
1.21445 0.91021 0.98601 1.06581 1.20660 0.90770 0.82846 0.74756
1.90632 1.66200 1.37147 1.52242 1.45789 1.07500 1.08218 1.73101
1.21662 0.80007 0.97923 0.97140 0.88727 1.24208 1.01018 1.00183
0.96675 1.21069 0.88513 0.91746 0.92072 0.92013 1.42181 1.05032
1.48867 1.38765 1.19610 0.94010 1.15285 1.08340 0.90829 1.25384
0.95552 1.02724 1.02107 1.69751 0.99025 1.48312 1.44127 0.85186
0.77469 0.78672 0.79077 1.19425 1.22128 1.22469 1.23396 0.99752
0.94275 0.94619 1.22582 0.97488 0.99444 0.97061 1.22712 0.95199
0.97671 1.00915 1.22545 0.94407 0.98888 0.97269 0.88814 0.92485
0.92063 0.92286 0.92857 0.92235 0.93296 0.88185 0.86572 0.75840
0.93981 0.88006 0.79047 0.93943 0.89651 0.93326 0.91141 0.89776
0.90164 0.88161
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.42 10.28 71.98 0.74 -1.68 16
2 C 0.05 0.96 6.66 71.98 0.48 1.44 16
3 O -0.41 -11.02 10.34 -148.98 -1.54 -12.56 16
4 C 0.09 2.42 5.23 71.98 0.38 2.79 16
5 C -0.14 -3.95 6.07 29.85 0.18 -3.76 16
6 C 0.52 17.59 7.83 87.66 0.69 18.28 16
7 O -0.58 -22.13 15.60 -3.02 -0.05 -22.18 16
8 N -0.70 -23.74 4.93 -441.15 -2.18 -25.91 16
9 C 0.14 4.49 4.10 45.28 0.19 4.68 16
10 H 0.09 3.03 7.50 -2.39 -0.02 3.01 16
11 C -0.18 -6.26 7.68 31.23 0.24 -6.02 16
12 C 0.18 6.62 4.35 45.28 0.20 6.82 16
13 H 0.06 2.33 8.12 -2.39 -0.02 2.31 16
14 N -0.71 -33.11 4.77 -321.57 -1.53 -34.64 16
15 C -0.24 -12.74 9.98 84.03 0.84 -11.90 16
16 H 0.07 3.81 7.83 -2.91 -0.02 3.78 16
17 C -0.06 -3.55 5.50 84.86 0.47 -3.08 16
18 N -0.96 -55.44 13.06 21.65 0.28 -55.16 16
19 Si 0.97 44.94 29.55 68.60 2.03 46.97 16
20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16
21 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16
22 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16
23 C -0.12 -3.56 0.77 -52.31 -0.04 -3.60 16
24 C -0.13 -3.78 7.22 30.89 0.22 -3.56 16
25 C -0.13 -3.11 8.08 31.23 0.25 -2.86 16
26 C -0.09 -2.14 7.84 30.88 0.24 -1.90 16
27 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16
28 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16
29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16
30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16
31 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16
32 H 0.06 1.56 8.10 -2.39 -0.02 1.54 16
33 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16
34 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16
35 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16
36 H 0.40 14.75 6.21 -92.71 -0.58 14.17 16
37 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16
38 H 0.10 3.00 8.14 -2.39 -0.02 2.99 16
39 H 0.38 18.16 5.12 -92.70 -0.47 17.68 16
40 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16
41 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16
42 H 0.05 1.75 7.51 -2.39 -0.02 1.73 16
43 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16
44 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16
45 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16
46 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16
Total: -1.00 -63.24 371.94 1.99 -61.25
By element:
Atomic # 1 Polarization: 46.67 SS G_CDS: -0.09 Total: 46.58 kcal
Atomic # 6 Polarization: -9.42 SS G_CDS: 5.07 Total: -4.36 kcal
Atomic # 7 Polarization: -112.28 SS G_CDS: -3.43 Total: -115.71 kcal
Atomic # 8 Polarization: -33.15 SS G_CDS: -1.59 Total: -34.74 kcal
Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal
Total: -63.24 1.99 -61.25 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001202608408.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.535 kcal
(2) G-P(sol) polarization free energy of solvation -63.242 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.707 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.250 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.715 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds