Wall clock time and date at job start Tue Mar 31 2020 03:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42900 * 109.47218 * 2 1 4 4 C 1.42901 * 114.00087 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47391 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47224 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00317 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99796 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99683 * 180.02562 * 8 6 5 10 10 H 1.09003 * 112.89031 * 26.84091 * 9 8 6 11 11 C 1.53952 * 113.66328 * 255.49356 * 9 8 6 12 12 C 1.53952 * 87.29627 * 220.70266 * 11 9 8 13 13 H 1.09002 * 113.66257 * 139.29664 * 12 11 9 14 14 N 1.46498 * 113.65985 * 270.26239 * 12 11 9 15 15 C 1.36943 * 119.99752 * 253.70920 * 14 12 11 16 16 H 1.08002 * 119.99793 * 0.27665 * 15 14 12 17 17 C 1.38811 * 120.00012 * 180.27737 * 15 14 12 18 18 N 1.31624 * 119.99698 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47213 * 60.00246 * 19 17 15 21 21 H 1.48502 * 109.47317 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47081 * 299.99875 * 19 17 15 23 23 C 1.52909 * 86.88438 * 24.78058 * 12 11 9 24 24 C 1.52909 * 121.14074 * 209.33275 * 23 12 11 25 25 C 1.53954 * 86.78350 * 209.37437 * 24 23 12 26 26 C 1.52905 * 121.14029 * 100.76712 * 23 12 11 27 27 H 1.08997 * 109.47157 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47029 * 300.00403 * 1 2 3 29 29 H 1.09003 * 109.47168 * 59.99880 * 1 2 3 30 30 H 1.08997 * 109.47205 * 239.99711 * 2 1 3 31 31 H 1.09006 * 109.47117 * 119.99590 * 2 1 3 32 32 H 1.09008 * 109.47256 * 59.99697 * 4 3 2 33 33 H 1.08999 * 109.47111 * 300.00063 * 4 3 2 34 34 H 1.08996 * 109.46919 * 60.00135 * 5 4 3 35 35 H 1.08999 * 109.47224 * 300.00213 * 5 4 3 36 36 H 0.96997 * 120.00457 * 359.97438 * 8 6 5 37 37 H 1.08996 * 113.57906 * 106.09585 * 11 9 8 38 38 H 1.08999 * 113.64511 * 335.31393 * 11 9 8 39 39 H 0.97001 * 120.00384 * 73.99275 * 14 12 11 40 40 H 0.96999 * 119.99739 * 180.02562 * 18 17 15 41 41 H 1.09002 * 113.66323 * 323.85124 * 24 23 12 42 42 H 1.09001 * 113.66091 * 94.90602 * 24 23 12 43 43 H 1.08991 * 113.58006 * 270.13684 * 25 24 23 44 44 H 1.09002 * 113.57874 * 139.33852 * 25 24 23 45 45 H 1.08996 * 113.66435 * 265.10147 * 26 23 12 46 46 H 1.09003 * 113.66343 * 36.15604 * 26 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 -0.0001 6 6 5.3277 3.0573 0.0011 7 8 6.0152 2.0581 0.0020 8 7 5.9073 4.2740 0.0003 9 6 7.3677 4.3896 0.0009 10 1 7.8613 3.5295 -0.4514 11 6 7.9551 4.7918 1.3660 12 6 8.9249 5.7075 0.5970 13 1 9.0833 6.6751 1.0731 14 7 10.1764 5.0490 0.2142 15 6 11.3376 5.3486 0.8753 16 1 11.3300 6.0670 1.6818 17 6 12.5245 4.7291 0.5089 18 7 12.5339 3.8540 -0.4743 19 14 14.1084 5.1372 1.4111 20 1 13.9587 4.8028 2.8502 21 1 15.2252 4.3476 0.8326 22 1 14.4008 6.5860 1.2673 23 6 7.8804 5.7365 -0.5194 24 6 8.2902 5.9179 -1.9813 25 6 6.9207 6.5890 -2.1916 26 6 6.9385 6.9288 -0.6901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8341 0.9764 -0.8892 33 1 3.8332 0.9767 0.8908 34 1 3.4223 3.4223 0.8894 35 1 3.4231 3.4214 -0.8905 36 1 5.3576 5.0732 -0.0015 37 1 8.4498 3.9718 1.8864 38 1 7.2544 5.3341 2.0008 39 1 10.1833 4.4039 -0.5101 40 1 13.3632 3.4208 -0.7301 41 1 9.1344 6.5937 -2.1183 42 1 8.4051 4.9791 -2.5231 43 1 6.1316 5.8913 -2.4713 44 1 6.9596 7.4661 -2.8377 45 1 5.9736 6.7978 -0.2005 46 1 7.4027 7.8889 -0.4644 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202608410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:34 Heat of formation + Delta-G solvation = -59.328590 kcal Electronic energy + Delta-G solvation = -24195.467795 eV Core-core repulsion = 20699.690285 eV Total energy + Delta-G solvation = -3495.777509 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.94941 -40.29164 -38.85915 -36.56186 -35.53017 -34.18731 -33.36628 -31.66661 -30.91455 -26.76513 -26.54285 -25.48144 -25.14320 -23.69411 -23.64174 -21.47154 -21.36842 -19.52652 -19.06134 -18.25151 -17.47113 -17.28730 -17.05126 -16.81722 -16.32646 -15.97479 -15.80100 -15.50618 -15.10341 -14.72575 -14.66437 -14.26460 -13.92563 -13.36577 -13.32611 -13.21477 -13.15424 -12.96807 -12.93147 -12.76367 -12.70401 -12.52935 -12.22544 -12.03707 -12.02075 -11.98508 -11.78199 -11.34284 -11.25372 -10.99651 -10.78897 -10.65211 -10.60951 -9.92496 -8.99212 -7.95182 -5.24133 1.45799 1.49255 1.55177 1.60411 1.99515 2.54443 2.86918 3.36043 3.41107 3.51233 3.71540 3.79891 3.92591 4.02904 4.05832 4.09323 4.17213 4.21510 4.26034 4.38373 4.48244 4.50597 4.58378 4.64214 4.73522 4.79067 4.82187 4.89280 4.92815 4.97605 5.03651 5.04417 5.11487 5.14172 5.24226 5.28132 5.29957 5.41010 5.51875 5.58769 5.75307 6.16638 6.26686 6.58857 7.28061 7.31779 8.09072 8.30955 9.28052 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.020865 B = 0.002984 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.606086 B = 9381.492350 C =10205.363519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.047 3.953 3 O -0.401 6.401 4 C 0.079 3.921 5 C -0.125 4.125 6 C 0.510 3.490 7 O -0.594 6.594 8 N -0.697 5.697 9 C 0.162 3.838 10 H 0.068 0.932 11 C -0.172 4.172 12 C 0.165 3.835 13 H 0.072 0.928 14 N -0.716 5.716 15 C -0.241 4.241 16 H 0.080 0.920 17 C -0.078 4.078 18 N -0.971 5.971 19 Si 0.975 3.025 20 H -0.279 1.279 21 H -0.298 1.298 22 H -0.274 1.274 23 C -0.116 4.116 24 C -0.129 4.129 25 C -0.123 4.123 26 C -0.094 4.094 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.417 0.583 37 H 0.034 0.966 38 H 0.104 0.896 39 H 0.371 0.629 40 H 0.250 0.750 41 H 0.068 0.932 42 H 0.040 0.960 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.510 2.614 -0.401 25.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.029 4.029 3 O -0.321 6.321 4 C 0.002 3.998 5 C -0.165 4.165 6 C 0.298 3.702 7 O -0.475 6.475 8 N -0.349 5.349 9 C 0.056 3.944 10 H 0.086 0.914 11 C -0.214 4.214 12 C 0.054 3.946 13 H 0.090 0.910 14 N -0.353 5.353 15 C -0.373 4.373 16 H 0.098 0.902 17 C -0.270 4.270 18 N -0.622 5.622 19 Si 0.804 3.196 20 H -0.206 1.206 21 H -0.225 1.225 22 H -0.200 1.200 23 C -0.118 4.118 24 C -0.167 4.167 25 C -0.160 4.160 26 C -0.131 4.131 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.257 0.743 37 H 0.053 0.947 38 H 0.122 0.878 39 H 0.203 0.797 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.059 0.941 43 H 0.105 0.895 44 H 0.099 0.901 45 H 0.112 0.888 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -25.012 2.162 -0.284 25.107 hybrid contribution 1.646 -0.667 0.099 1.779 sum -23.367 1.495 -0.185 23.415 Atomic orbital electron populations 1.21752 0.92150 1.03450 1.03020 1.22683 0.96746 0.82813 1.00648 1.87769 1.20673 1.28049 1.95604 1.22026 0.80806 0.96300 1.00713 1.21421 0.89492 0.97685 1.07894 1.21100 0.91361 0.83021 0.74683 1.90739 1.66815 1.38248 1.51673 1.45826 1.06736 1.08419 1.73915 1.21779 0.79813 0.95992 0.96777 0.91432 1.24170 0.99925 1.00573 0.96690 1.21106 0.84468 0.94642 0.94399 0.91023 1.42237 1.03451 1.49191 1.40430 1.19648 0.86882 1.18825 1.11896 0.90232 1.25603 1.01297 0.99977 1.00126 1.69838 1.26960 1.32642 1.32722 0.85189 0.79016 0.77567 0.77851 1.20559 1.22474 1.20000 1.23424 0.97561 0.95476 0.95322 1.22584 0.98522 1.00074 0.95501 1.22805 0.95764 1.00619 0.96798 1.22545 0.98591 0.95882 0.96099 0.89318 0.91905 0.91875 0.93031 0.93066 0.93635 0.93689 0.85602 0.85519 0.74344 0.94703 0.87793 0.79685 0.94127 0.91331 0.94081 0.89509 0.90090 0.88811 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.28 71.98 0.74 -0.96 16 2 C 0.05 0.76 6.66 71.98 0.48 1.24 16 3 O -0.40 -8.06 10.34 -148.98 -1.54 -9.60 16 4 C 0.08 1.69 5.23 71.98 0.38 2.07 16 5 C -0.13 -2.20 6.07 29.85 0.18 -2.02 16 6 C 0.51 13.65 7.83 87.66 0.69 14.34 16 7 O -0.59 -22.73 15.62 -3.04 -0.05 -22.77 16 8 N -0.70 -16.49 5.31 -440.67 -2.34 -18.83 16 9 C 0.16 5.33 4.01 45.38 0.18 5.51 16 10 H 0.07 2.90 7.54 -2.39 -0.02 2.89 16 11 C -0.17 -6.03 7.68 31.23 0.24 -5.79 16 12 C 0.16 6.39 4.35 45.28 0.20 6.59 16 13 H 0.07 2.68 8.11 -2.39 -0.02 2.66 16 14 N -0.72 -36.69 5.11 -321.55 -1.64 -38.33 16 15 C -0.24 -13.50 9.97 84.03 0.84 -12.67 16 16 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 17 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 18 N -0.97 -61.18 13.06 21.65 0.28 -60.90 16 19 Si 0.97 46.94 29.55 68.60 2.03 48.97 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 21 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 22 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 23 C -0.12 -3.47 0.92 -52.21 -0.05 -3.52 16 24 C -0.13 -4.05 7.46 30.89 0.23 -3.82 16 25 C -0.12 -2.55 8.08 31.23 0.25 -2.30 16 26 C -0.09 -1.86 7.46 30.88 0.23 -1.63 16 27 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.05 1.08 8.10 -2.38 -0.02 1.06 16 33 H 0.04 1.07 8.10 -2.39 -0.02 1.05 16 34 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.42 6.40 6.69 -92.71 -0.62 5.78 16 37 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 39 H 0.37 20.96 7.78 -92.71 -0.72 20.24 16 40 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 41 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.09 1.27 6.43 -2.39 -0.02 1.26 16 46 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -74.39 374.69 1.41 -72.98 By element: Atomic # 1 Polarization: 35.94 SS G_CDS: -0.38 Total: 35.56 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 5.05 Total: -7.07 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -3.70 Total: -118.06 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -1.59 Total: -32.38 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -74.39 1.41 -72.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202608410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.649 kcal (2) G-P(sol) polarization free energy of solvation -74.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds