Wall clock time and date at job start Tue Mar 31 2020 03:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99968 * 2 1 4 4 H 1.08999 * 109.46827 * 30.00276 * 3 2 1 5 5 C 1.50701 * 109.47347 * 270.00323 * 3 2 1 6 6 O 1.21284 * 119.99770 * 354.99635 * 5 3 2 7 7 N 1.34780 * 120.00162 * 175.00054 * 5 3 2 8 8 C 1.46492 * 119.99930 * 179.97438 * 7 5 3 9 9 H 1.09002 * 109.47696 * 34.99761 * 8 7 5 10 10 C 1.52997 * 109.47244 * 274.99857 * 8 7 5 11 11 C 1.53005 * 109.47452 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47159 * 59.99536 * 11 10 8 13 13 C 1.52997 * 109.47317 * 300.00546 * 12 11 10 14 14 C 1.53000 * 109.47060 * 59.99960 * 13 12 11 15 15 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 16 16 N 1.46499 * 109.46840 * 180.02562 * 14 13 12 17 17 C 1.36940 * 119.99991 * 274.99409 * 16 14 13 18 18 H 1.07998 * 119.99825 * 0.02562 * 17 16 14 19 19 C 1.38811 * 120.00230 * 179.97438 * 17 16 14 20 20 N 1.31614 * 120.00098 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 120.00025 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.46988 * 89.99299 * 21 19 17 23 23 H 1.48492 * 109.46780 * 209.99575 * 21 19 17 24 24 H 1.48498 * 109.46796 * 329.99500 * 21 19 17 25 25 C 1.53003 * 109.47185 * 150.00392 * 3 2 1 26 26 C 1.52999 * 117.49701 * 8.74595 * 25 3 2 27 27 C 1.52997 * 117.49684 * 300.08566 * 25 3 2 28 28 H 1.09001 * 109.46636 * 299.99680 * 1 2 3 29 29 H 1.08998 * 109.46925 * 59.99924 * 1 2 3 30 30 H 1.09001 * 109.46988 * 180.02562 * 1 2 3 31 31 H 0.96998 * 119.99716 * 359.97438 * 7 5 3 32 32 H 1.09002 * 109.47153 * 300.00242 * 10 8 7 33 33 H 1.09001 * 109.47289 * 60.00326 * 10 8 7 34 34 H 1.09000 * 109.47360 * 180.02562 * 11 10 8 35 35 H 1.09002 * 109.46935 * 300.00125 * 11 10 8 36 36 H 1.08996 * 109.46929 * 179.97438 * 12 11 10 37 37 H 1.09002 * 109.46716 * 60.00455 * 12 11 10 38 38 H 1.09002 * 109.47153 * 299.99641 * 13 12 11 39 39 H 1.09001 * 109.46832 * 179.97438 * 13 12 11 40 40 H 0.97002 * 120.00410 * 95.00239 * 16 14 13 41 41 H 0.97001 * 120.00026 * 180.02562 * 20 19 17 42 42 H 1.08995 * 115.55161 * 154.42044 * 25 3 2 43 43 H 1.08996 * 117.49857 * 359.97438 * 26 25 3 44 44 H 1.08999 * 117.50030 * 145.02268 * 26 25 3 45 45 H 1.08993 * 117.50177 * 214.97739 * 27 25 3 46 46 H 1.09002 * 117.50031 * 359.97438 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2145 1.7644 -1.4208 6 8 1.9791 1.0106 -2.3413 7 7 2.6588 3.0125 -1.6686 8 6 2.8579 3.4585 -3.0497 9 1 2.0968 3.0114 -3.6892 10 6 4.2451 3.0272 -3.5300 11 6 4.4533 3.4935 -4.9723 12 6 4.3426 5.0181 -5.0364 13 6 2.9555 5.4494 -4.5561 14 6 2.7474 4.9832 -3.1138 15 1 3.5085 5.4298 -2.4741 16 7 1.4189 5.3956 -2.6542 17 6 1.2322 6.6498 -2.1369 18 1 2.0643 7.3349 -2.0681 19 6 -0.0266 7.0408 -1.7018 20 7 -0.2061 8.2464 -1.2051 21 14 -1.4660 5.8561 -1.8214 22 1 -1.5550 5.0578 -0.5724 23 1 -2.7236 6.6227 -2.0098 24 1 -1.2631 4.9459 -2.9771 25 6 3.3590 1.2632 0.7212 26 6 3.9154 -0.1110 1.0990 27 6 3.3639 0.8167 2.1845 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 2.8468 3.6155 -0.9323 32 1 5.0062 3.4742 -2.8905 33 1 4.3240 1.9410 -3.4840 34 1 5.4413 3.1858 -5.3146 35 1 3.6921 3.0468 -5.6120 36 1 4.4914 5.3503 -6.0638 37 1 5.1037 5.4648 -4.3967 38 1 2.1943 5.0027 -5.1958 39 1 2.8768 6.5356 -4.6014 40 1 0.6715 4.7804 -2.7161 41 1 -1.0857 8.5195 -0.9008 42 1 4.0735 2.0320 0.4272 43 1 3.3203 -0.9850 0.8341 44 1 4.9960 -0.2463 1.0539 45 1 4.0820 1.2913 2.8532 46 1 2.4063 0.5534 2.6336 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225994420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:51 Heat of formation + Delta-G solvation = -56.652044 kcal Electronic energy + Delta-G solvation = -25484.281657 eV Core-core repulsion = 21988.620211 eV Total energy + Delta-G solvation = -3495.661446 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.23009 -38.70819 -37.30190 -36.16557 -34.20032 -33.79877 -31.39916 -30.03494 -28.78987 -27.74154 -26.06230 -23.51582 -22.54247 -22.35397 -21.24182 -21.00822 -20.05149 -19.58749 -17.97662 -17.21512 -16.76170 -16.22064 -15.55501 -15.16957 -14.91123 -14.58386 -14.37527 -14.09921 -13.66702 -13.53884 -13.50132 -13.19581 -12.90783 -12.66779 -12.35788 -12.25137 -11.67214 -11.56361 -11.44939 -11.40211 -11.05487 -10.95598 -10.88766 -10.73409 -10.57626 -10.46765 -10.36818 -10.25956 -10.16063 -9.79524 -9.65046 -9.12886 -8.95446 -8.69641 -7.34346 -5.84059 -3.19746 2.76996 3.17594 3.30455 3.36797 3.40117 3.70004 3.79291 4.52325 4.52508 4.73098 4.80818 4.90334 5.01438 5.07370 5.13085 5.23500 5.26030 5.35627 5.41875 5.44295 5.45489 5.57056 5.57135 5.65657 5.66256 5.75764 5.76787 5.85132 5.89973 5.98647 6.02983 6.15687 6.23794 6.35819 6.37774 6.41049 6.45262 6.76152 6.79369 6.90340 6.99936 7.79509 7.91538 8.34851 8.46538 9.12940 9.85834 10.05603 11.34021 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.010940 B = 0.006119 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.911357 B = 4575.049104 C = 6105.636977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.101 3.899 4 H 0.091 0.909 5 C 0.495 3.505 6 O -0.534 6.534 7 N -0.709 5.709 8 C 0.138 3.862 9 H 0.082 0.918 10 C -0.123 4.123 11 C -0.114 4.114 12 C -0.119 4.119 13 C -0.133 4.133 14 C 0.178 3.822 15 H 0.060 0.940 16 N -0.746 5.746 17 C -0.243 4.243 18 H 0.091 0.909 19 C 0.008 3.992 20 N -0.932 5.932 21 Si 0.880 3.120 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.278 1.278 25 C -0.158 4.158 26 C -0.159 4.159 27 C -0.169 4.169 28 H 0.042 0.958 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.404 0.596 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.361 0.639 41 H 0.260 0.740 42 H 0.120 0.880 43 H 0.107 0.893 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.755 -14.185 2.130 16.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.274 6.274 3 C 0.040 3.960 4 H 0.109 0.891 5 C 0.280 3.720 6 O -0.411 6.411 7 N -0.361 5.361 8 C 0.033 3.967 9 H 0.100 0.900 10 C -0.162 4.162 11 C -0.153 4.153 12 C -0.157 4.157 13 C -0.174 4.174 14 C 0.068 3.932 15 H 0.078 0.922 16 N -0.389 5.389 17 C -0.373 4.373 18 H 0.109 0.891 19 C -0.188 4.188 20 N -0.579 5.579 21 Si 0.710 3.290 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.177 4.177 26 C -0.196 4.196 27 C -0.206 4.206 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.239 0.761 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.194 0.806 41 H 0.070 0.930 42 H 0.138 0.862 43 H 0.125 0.875 44 H 0.111 0.889 45 H 0.115 0.885 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.684 -14.663 1.580 17.114 hybrid contribution -1.385 -0.074 0.195 1.401 sum 7.299 -14.737 1.775 16.541 Atomic orbital electron populations 1.22865 0.80634 1.02983 1.00346 1.87924 1.19956 1.25024 1.94472 1.21451 0.95346 0.86690 0.92536 0.89136 1.21111 0.77114 0.82099 0.91667 1.90674 1.50578 1.53924 1.45917 1.46011 1.66823 1.13809 1.09444 1.21340 0.97082 0.95962 0.82356 0.90008 1.21853 0.96771 1.00921 0.96633 1.21484 1.01181 0.96349 0.96237 1.21573 0.98337 0.95140 1.00686 1.22181 0.95247 1.01962 0.97999 1.20447 0.89058 0.89698 0.93991 0.92190 1.42792 1.05203 1.15183 1.75679 1.19046 0.96033 0.89505 1.32687 0.89090 1.24632 0.97040 0.96204 1.00898 1.69689 1.22684 1.17985 1.47568 0.86628 0.83648 0.80930 0.77790 1.21238 1.21713 1.20400 1.22249 0.96576 1.00865 0.97971 1.22878 1.00531 0.94106 1.02090 1.22966 1.03205 1.03773 0.90676 0.93916 0.93509 0.89321 0.76075 0.91841 0.91848 0.92257 0.92059 0.92519 0.92167 0.92593 0.91100 0.80624 0.93036 0.86198 0.87508 0.88938 0.88479 0.88637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.81 101.05 1.09 1.43 16 2 O -0.36 -5.04 8.24 -55.09 -0.45 -5.49 16 3 C 0.10 1.37 2.87 -27.88 -0.08 1.29 16 4 H 0.09 1.16 7.79 -51.93 -0.40 0.76 16 5 C 0.50 8.04 7.09 -10.98 -0.08 7.96 16 6 O -0.53 -10.50 16.17 -14.31 -0.23 -10.73 16 7 N -0.71 -10.87 4.80 -53.81 -0.26 -11.12 16 8 C 0.14 2.21 1.98 -67.94 -0.13 2.08 16 9 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 10 C -0.12 -1.67 5.49 -26.73 -0.15 -1.82 16 11 C -0.11 -1.43 5.92 -26.73 -0.16 -1.59 16 12 C -0.12 -1.57 5.92 -26.73 -0.16 -1.73 16 13 C -0.13 -2.21 5.50 -26.73 -0.15 -2.36 16 14 C 0.18 3.17 2.29 -67.93 -0.16 3.02 16 15 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 16 N -0.75 -16.57 4.76 -53.43 -0.25 -16.83 16 17 C -0.24 -6.44 10.41 -15.06 -0.16 -6.60 16 18 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 19 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 20 N -0.93 -28.33 13.97 55.49 0.78 -27.56 16 21 Si 0.88 21.78 27.74 -169.99 -4.71 17.06 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.28 -6.68 6.52 56.52 0.37 -6.31 16 25 C -0.16 -1.78 5.67 -90.62 -0.51 -2.29 16 26 C -0.16 -1.67 9.88 -26.69 -0.26 -1.93 16 27 C -0.17 -1.62 10.19 -26.69 -0.27 -1.89 16 28 H 0.04 0.45 8.08 -51.93 -0.42 0.03 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.40 5.76 8.60 -40.82 -0.35 5.40 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.36 8.29 5.66 -40.82 -0.23 8.06 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.12 1.25 8.03 -51.93 -0.42 0.83 16 43 H 0.11 1.24 7.06 -51.93 -0.37 0.88 16 44 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 369.03 15.07 5.56 5.56 Total: -1.00 -31.73 369.03 -8.94 -40.66 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -8.09 Total: 12.73 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -1.27 Total: -4.28 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.26 Total: -55.51 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.69 Total: -16.23 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.06 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.73 -8.94 -40.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225994420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.990 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds