Wall clock time and date at job start Tue Mar 31 2020 03:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47130 * 2 1 4 4 C 1.42897 * 114.00421 * 177.13631 * 3 2 1 5 5 H 1.09002 * 109.46928 * 25.56002 * 4 3 2 6 6 C 1.50688 * 109.47466 * 145.56236 * 4 3 2 7 7 O 1.21283 * 120.00539 * 10.07931 * 6 4 3 8 8 N 1.34785 * 120.00210 * 190.07595 * 6 4 3 9 9 C 1.46502 * 119.99746 * 5.49834 * 8 6 4 10 10 C 1.46494 * 120.00027 * 185.49300 * 8 6 4 11 11 C 1.53003 * 109.47486 * 95.17820 * 10 8 6 12 12 H 1.09001 * 112.73574 * 45.76971 * 11 10 8 13 13 C 1.53496 * 113.46415 * 274.95728 * 11 10 8 14 14 C 1.53505 * 83.33927 * 219.14419 * 13 11 10 15 15 N 1.47055 * 113.47278 * 176.51649 * 11 10 8 16 16 C 1.36940 * 136.05887 * 321.87017 * 15 11 10 17 17 H 1.07999 * 119.99823 * 5.34237 * 16 15 11 18 18 C 1.38804 * 120.00151 * 185.35089 * 16 15 11 19 19 N 1.31623 * 120.00176 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00126 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46995 * 59.99802 * 20 18 16 22 22 H 1.48501 * 109.47675 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47481 * 299.99798 * 20 18 16 24 24 C 1.52998 * 109.46970 * 265.56556 * 4 3 2 25 25 C 1.53002 * 117.49758 * 64.39398 * 24 4 3 26 26 C 1.53005 * 60.02907 * 252.47302 * 25 24 4 27 27 H 1.09002 * 109.46925 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47359 * 299.99589 * 1 2 3 29 29 H 1.08997 * 109.47458 * 60.00176 * 1 2 3 30 30 H 1.09003 * 109.46688 * 240.00074 * 2 1 3 31 31 H 1.08997 * 109.47458 * 119.99823 * 2 1 3 32 32 H 1.08998 * 109.47050 * 94.76568 * 9 8 6 33 33 H 1.08998 * 109.46763 * 214.77159 * 9 8 6 34 34 H 1.09003 * 109.47074 * 334.76363 * 9 8 6 35 35 H 1.09006 * 109.47322 * 215.17497 * 10 8 6 36 36 H 1.08999 * 109.47361 * 335.17862 * 10 8 6 37 37 H 1.08998 * 114.20539 * 332.73193 * 13 11 10 38 38 H 1.08994 * 114.20886 * 105.56138 * 13 11 10 39 39 H 1.08991 * 113.46661 * 271.28322 * 14 13 11 40 40 H 1.09005 * 113.51277 * 140.85475 * 14 13 11 41 41 H 0.97002 * 120.00021 * 180.02562 * 19 18 16 42 42 H 1.09000 * 115.54976 * 210.05832 * 24 4 3 43 43 H 1.08995 * 117.50185 * 359.97200 * 25 24 4 44 44 H 1.09003 * 117.49576 * 144.97815 * 25 24 4 45 45 H 1.08999 * 117.49289 * 107.50375 * 26 25 24 46 46 H 1.08998 * 117.49865 * 252.52016 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4293 1.4607 0.0652 5 1 3.8848 0.5581 -0.3422 6 6 3.8754 2.6551 -0.7381 7 8 3.0556 3.4446 -1.1571 8 7 5.1854 2.8460 -0.9909 9 6 6.1642 1.8323 -0.5900 10 6 5.6306 4.0672 -1.6668 11 6 6.0598 5.1003 -0.6230 12 1 6.6941 4.6749 0.1547 13 6 4.8946 5.9355 -0.0745 14 6 5.9174 7.0783 -0.1402 15 7 6.6011 6.3354 -1.2095 16 6 7.3936 6.6538 -2.2800 17 1 7.7006 5.8840 -2.9724 18 6 7.8024 7.9659 -2.4749 19 7 7.4279 8.9042 -1.6312 20 14 8.8840 8.4001 -3.9347 21 1 8.1780 8.0533 -5.1944 22 1 9.1783 9.8556 -3.9174 23 1 10.1552 7.6367 -3.8534 24 6 3.8606 1.6363 1.5226 25 6 3.5901 0.4772 2.4840 26 6 2.7578 1.7577 2.5772 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 6.3621 1.1663 -1.4298 33 1 7.0903 2.3211 -0.2876 34 1 5.7682 1.2555 0.2458 35 1 6.4742 3.8357 -2.3171 36 1 4.8125 4.4714 -2.2629 37 1 4.0584 6.0438 -0.7652 38 1 4.5892 5.6667 0.9366 39 1 6.5131 7.1803 0.7668 40 1 5.4912 8.0247 -0.4731 41 1 7.7133 9.8212 -1.7677 42 1 4.7705 2.2163 1.6770 43 1 3.1045 -0.4103 2.0783 44 1 4.3222 0.2945 3.2706 45 1 1.7246 1.7125 2.2328 46 1 2.9426 2.4174 3.4249 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234333462.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:38 Heat of formation + Delta-G solvation = 15.060371 kcal Electronic energy + Delta-G solvation = -25151.455510 eV Core-core repulsion = 21658.903748 eV Total energy + Delta-G solvation = -3492.551762 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.37336 -38.66478 -37.60607 -36.16778 -35.09048 -32.17298 -31.70494 -29.41654 -27.83935 -27.40642 -26.00889 -23.34711 -23.33609 -22.34803 -22.23665 -21.16424 -19.29097 -19.06736 -17.24986 -17.08973 -16.73098 -16.30188 -15.65434 -15.46721 -14.84792 -14.60078 -14.38893 -13.86092 -13.68671 -13.37947 -13.21141 -12.91553 -12.71631 -12.63079 -12.40532 -12.04412 -11.97073 -11.84337 -11.45094 -11.40493 -11.35391 -11.03528 -10.83564 -10.71976 -10.70462 -10.39005 -10.38196 -9.89032 -9.80443 -9.75470 -9.44590 -9.17039 -8.74592 -8.23603 -6.81854 -5.72302 -3.04416 2.71771 2.87417 3.41955 3.45485 3.47362 3.55202 3.79093 4.37756 4.46396 4.51434 4.65642 4.81413 4.84124 4.90867 4.97324 5.06026 5.16731 5.27280 5.30818 5.39990 5.41074 5.48374 5.51835 5.64990 5.67574 5.68935 5.74942 5.87550 5.91590 5.94648 6.05296 6.06562 6.13846 6.46651 6.56941 6.71270 6.81206 6.84817 6.97097 7.31246 7.51462 7.62178 7.63883 8.02881 8.41791 9.07786 9.74971 10.71044 11.45716 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.027514 B = 0.003428 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.403094 B = 8166.653241 C = 8294.567011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.351 6.351 4 C 0.107 3.893 5 H 0.084 0.916 6 C 0.516 3.484 7 O -0.511 6.511 8 N -0.609 5.609 9 C 0.070 3.930 10 C 0.115 3.885 11 C 0.131 3.869 12 H 0.039 0.961 13 C -0.159 4.159 14 C 0.157 3.843 15 N -0.600 5.600 16 C -0.219 4.219 17 H 0.079 0.921 18 C -0.007 4.007 19 N -0.918 5.918 20 Si 0.911 3.089 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.286 1.286 24 C -0.179 4.179 25 C -0.181 4.181 26 C -0.157 4.157 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.049 0.951 39 H 0.024 0.976 40 H 0.065 0.935 41 H 0.254 0.746 42 H 0.119 0.881 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.106 0.894 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.296 -21.464 7.682 24.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.268 6.268 4 C 0.045 3.955 5 H 0.102 0.898 6 C 0.301 3.699 7 O -0.384 6.384 8 N -0.345 5.345 9 C -0.074 4.074 10 C -0.008 4.008 11 C 0.023 3.977 12 H 0.057 0.943 13 C -0.197 4.197 14 C 0.031 3.969 15 N -0.326 5.326 16 C -0.347 4.347 17 H 0.097 0.903 18 C -0.203 4.203 19 N -0.565 5.565 20 Si 0.741 3.259 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.212 1.212 24 C -0.198 4.198 25 C -0.218 4.218 26 C -0.194 4.194 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.041 0.959 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.137 0.863 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.124 0.876 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.672 -20.619 7.203 23.499 hybrid contribution 1.193 -0.012 -0.625 1.347 sum -7.479 -20.630 6.578 22.909 Atomic orbital electron populations 1.21724 0.93421 1.02089 1.03514 1.22742 0.96046 0.84014 1.00077 1.88080 1.18536 1.25803 1.94428 1.21328 0.83291 0.97395 0.93475 0.89826 1.20155 0.82422 0.86796 0.80493 1.90722 1.51794 1.45555 1.50352 1.47786 1.05793 1.21055 1.59861 1.21931 0.93604 0.91726 1.00107 1.21903 1.00307 0.83096 0.95484 1.22416 0.92965 0.89129 0.93231 0.94335 1.23657 0.97229 0.99641 0.99208 1.21962 0.89407 0.95487 0.90029 1.45614 1.58550 1.00758 1.27701 1.18835 1.23048 0.93282 0.99493 0.90306 1.24806 1.00750 0.95904 0.98885 1.69844 1.48772 1.00674 1.37213 0.86225 0.80354 0.77246 0.82074 1.21046 1.21582 1.21226 1.22774 1.02129 1.04308 0.90602 1.23129 1.03920 0.92640 1.02080 1.22931 0.97449 0.99287 0.99695 0.91159 0.91740 0.91568 0.93390 0.92939 0.92727 0.90650 0.90831 0.91017 0.89188 0.90034 0.93273 0.95860 0.91698 0.93622 0.86299 0.88793 0.88453 0.87564 0.88634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 37.16 0.38 -0.81 16 2 C 0.05 0.43 6.19 37.16 0.23 0.66 16 3 O -0.35 -4.57 7.96 -54.94 -0.44 -5.00 16 4 C 0.11 1.29 2.09 -27.89 -0.06 1.23 16 5 H 0.08 0.80 7.10 -51.93 -0.37 0.43 16 6 C 0.52 8.31 6.97 -10.99 -0.08 8.23 16 7 O -0.51 -10.55 16.01 -14.15 -0.23 -10.78 16 8 N -0.61 -9.14 2.87 -181.57 -0.52 -9.66 16 9 C 0.07 0.73 9.88 59.85 0.59 1.32 16 10 C 0.11 2.15 5.46 -4.04 -0.02 2.13 16 11 C 0.13 2.76 4.31 -72.41 -0.31 2.45 16 12 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 13 C -0.16 -3.39 8.02 -26.21 -0.21 -3.60 16 14 C 0.16 3.92 7.28 -8.51 -0.06 3.86 16 15 N -0.60 -15.75 3.65 -177.02 -0.65 -16.39 16 16 C -0.22 -6.19 10.55 -15.06 -0.16 -6.35 16 17 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 18 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 19 N -0.92 -27.96 11.64 55.49 0.65 -27.31 16 20 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 C -0.18 -1.87 4.47 -90.58 -0.40 -2.27 16 25 C -0.18 -1.42 9.88 -26.73 -0.26 -1.68 16 26 C -0.16 -1.56 9.83 -26.69 -0.26 -1.82 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.38 5.38 -51.93 -0.28 0.10 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 34 H 0.07 0.61 4.83 -51.93 -0.25 0.36 16 35 H 0.07 1.32 8.11 -51.93 -0.42 0.90 16 36 H 0.09 1.92 6.98 -51.93 -0.36 1.56 16 37 H 0.08 1.85 7.96 -51.93 -0.41 1.44 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 1.79 7.37 -51.93 -0.38 1.40 16 41 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.12 1.29 7.16 -51.93 -0.37 0.92 16 43 H 0.09 0.64 5.74 -51.93 -0.30 0.34 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.11 1.15 6.95 -51.93 -0.36 0.79 16 46 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 366.94 15.07 5.53 5.53 Total: -1.00 -34.29 366.94 -9.11 -43.39 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -7.70 Total: -0.20 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -0.72 Total: 3.06 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.52 Total: -53.37 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.66 Total: -15.78 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.29 -9.11 -43.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234333462.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.454 kcal (2) G-P(sol) polarization free energy of solvation -34.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds