Wall clock time and date at job start Tue Mar 31 2020 03:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34228 * 117.00327 * 2 1 4 4 O 1.20827 * 119.99732 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00191 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.46045 * 39.98115 * 5 3 2 7 7 C 1.53038 * 109.46449 * 280.00260 * 5 3 2 8 8 C 1.53117 * 109.27596 * 180.80264 * 7 5 3 9 9 C 1.53120 * 109.15997 * 57.65554 * 8 7 5 10 10 H 1.09000 * 109.50084 * 182.36167 * 9 8 7 11 11 N 1.46906 * 109.50373 * 62.28604 * 9 8 7 12 12 C 1.46899 * 111.00235 * 153.81810 * 11 9 8 13 13 H 1.09003 * 109.41181 * 33.36291 * 12 11 9 14 14 C 1.52950 * 109.35739 * 153.18551 * 12 11 9 15 15 C 1.53226 * 109.40510 * 183.66958 * 14 12 11 16 16 C 1.51273 * 108.53577 * 305.37336 * 15 14 12 17 17 C 1.37882 * 120.84808 * 231.32536 * 16 15 14 18 18 N 1.31517 * 119.99823 * 180.02562 * 17 16 15 19 19 Si 1.86799 * 120.00174 * 0.02562 * 17 16 15 20 20 H 1.48494 * 109.47244 * 59.99903 * 19 17 16 21 21 H 1.48503 * 109.47094 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46756 * 299.99853 * 19 17 16 23 23 C 1.51265 * 118.30039 * 51.34635 * 16 15 14 24 24 C 1.52963 * 109.41059 * 273.50874 * 12 11 9 25 25 C 1.53031 * 109.27953 * 302.34311 * 9 8 7 26 26 N 1.46842 * 109.46008 * 159.94636 * 5 3 2 27 27 H 1.09000 * 109.47298 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.47031 * 299.99774 * 1 2 3 29 29 H 1.08996 * 109.47354 * 59.99964 * 1 2 3 30 30 H 1.08999 * 109.49849 * 60.86594 * 7 5 3 31 31 H 1.08997 * 109.53463 * 300.76263 * 7 5 3 32 32 H 1.08999 * 109.52430 * 297.74943 * 8 7 5 33 33 H 1.09003 * 109.57066 * 177.59140 * 8 7 5 34 34 H 1.00902 * 110.99735 * 29.85930 * 11 9 8 35 35 H 1.09000 * 109.48416 * 303.64943 * 14 12 11 36 36 H 1.09006 * 109.48207 * 63.68735 * 14 12 11 37 37 H 1.09006 * 109.62611 * 185.66259 * 15 14 12 38 38 H 1.08994 * 109.78601 * 65.17947 * 15 14 12 39 39 H 0.96998 * 119.99974 * 180.02562 * 18 17 16 40 40 H 1.09003 * 109.62671 * 188.93436 * 23 16 15 41 41 H 1.09005 * 109.62602 * 68.36679 * 23 16 15 42 42 H 1.09000 * 109.47959 * 296.33883 * 24 12 11 43 43 H 1.09000 * 109.48537 * 56.36906 * 24 12 11 44 44 H 1.08997 * 109.46512 * 179.19376 * 25 9 8 45 45 H 1.08998 * 109.46399 * 299.16425 * 25 9 8 46 46 H 1.00903 * 111.00080 * 57.66561 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9704 0.5072 -0.6595 7 6 4.0881 1.0515 1.4218 8 6 5.6160 1.1523 1.4210 9 6 6.0289 2.5227 0.8768 10 1 7.1163 2.5849 0.8345 11 7 5.5114 3.5771 1.7593 12 6 6.3404 4.7870 1.6763 13 1 6.7306 4.8900 0.6638 14 6 5.4883 6.0099 2.0196 15 6 6.3271 7.2802 1.8446 16 6 7.5848 7.1440 2.6740 17 6 7.9604 8.1347 3.5565 18 7 9.0575 7.9992 4.2690 19 14 6.9111 9.6692 3.7399 20 1 5.5486 9.2863 4.1893 21 1 7.5279 10.5736 4.7434 22 1 6.8231 10.3678 2.4324 23 6 8.4200 5.8936 2.5102 24 6 7.5053 4.6735 2.6611 25 6 5.4508 2.7034 -0.5285 26 7 3.9870 2.5991 -0.4743 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 3.7889 0.0622 1.7680 31 1 3.6737 1.8101 2.0856 32 1 6.0325 0.3686 0.7883 33 1 5.9901 1.0365 2.4383 34 1 5.4428 3.2502 2.7115 35 1 4.6252 6.0497 1.3551 36 1 5.1487 5.9379 3.0529 37 1 5.7568 8.1451 2.1836 38 1 6.5926 7.4053 0.7949 39 1 9.3216 8.6959 4.8900 40 1 9.1945 5.8676 3.2768 41 1 8.8792 5.8869 1.5216 42 1 7.1181 4.6332 3.6792 43 1 8.0717 3.7661 2.4514 44 1 5.7310 3.6840 -0.9132 45 1 5.8459 1.9291 -1.1861 46 1 3.5934 3.3305 0.0986 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246204316.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:38 Heat of formation + Delta-G solvation = -102.535702 kcal Electronic energy + Delta-G solvation = -25088.805289 eV Core-core repulsion = 21591.154178 eV Total energy + Delta-G solvation = -3497.651110 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.80457 -39.17898 -37.11766 -36.41671 -33.89405 -31.97394 -31.56944 -29.84548 -29.39206 -27.92808 -26.23574 -24.42138 -23.29923 -21.66103 -21.42696 -20.91244 -19.70154 -19.28159 -17.83328 -17.06246 -16.49691 -16.23071 -15.32636 -15.11073 -14.95987 -14.49332 -14.37532 -14.12577 -13.60824 -13.19767 -13.11673 -12.88245 -12.82385 -12.41922 -12.28541 -12.15882 -12.08398 -11.86314 -11.50465 -11.39612 -11.23498 -10.98476 -10.93858 -10.76154 -10.74751 -10.53209 -10.31835 -10.05251 -9.91537 -9.59064 -8.99607 -8.81338 -8.46074 -8.43112 -7.79499 -6.09264 -3.99619 2.10258 2.46610 3.30655 3.36891 3.38989 4.25100 4.40068 4.43135 4.60549 4.71209 4.73506 4.87973 4.94145 4.97861 5.04964 5.18582 5.19983 5.29796 5.49167 5.59260 5.64864 5.75211 5.77572 5.86613 5.99120 6.03906 6.06398 6.19926 6.24677 6.53848 6.65661 6.75704 6.77262 6.92476 7.02351 7.03075 7.11251 7.44175 7.45578 7.58527 7.63904 7.65995 7.69717 7.78870 7.88245 8.39986 8.97912 9.56039 11.00593 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.026276 B = 0.003422 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.364333 B = 8179.862316 C = 8772.598231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.363 6.363 3 C 0.467 3.533 4 O -0.494 6.494 5 C 0.102 3.898 6 H 0.109 0.891 7 C -0.140 4.140 8 C -0.116 4.116 9 C 0.043 3.957 10 H 0.054 0.946 11 N -0.686 5.686 12 C 0.100 3.900 13 H 0.065 0.935 14 C -0.091 4.091 15 C -0.012 4.012 16 C -0.487 4.487 17 C 0.074 3.926 18 N -0.893 5.893 19 Si 0.891 3.109 20 H -0.274 1.274 21 H -0.293 1.293 22 H -0.275 1.275 23 C 0.014 3.986 24 C -0.132 4.132 25 C 0.075 3.925 26 N -0.664 5.664 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.337 0.663 35 H 0.039 0.961 36 H 0.048 0.952 37 H 0.023 0.977 38 H 0.017 0.983 39 H 0.264 0.736 40 H 0.054 0.946 41 H 0.001 0.999 42 H 0.049 0.951 43 H 0.024 0.976 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.910 -17.404 -7.052 21.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.279 6.279 3 C 0.309 3.691 4 O -0.379 6.379 5 C -0.009 4.009 6 H 0.127 0.873 7 C -0.180 4.180 8 C -0.154 4.154 9 C -0.069 4.069 10 H 0.072 0.928 11 N -0.317 5.317 12 C -0.008 4.008 13 H 0.083 0.917 14 C -0.130 4.130 15 C -0.050 4.050 16 C -0.506 4.506 17 C -0.128 4.128 18 N -0.531 5.531 19 Si 0.720 3.280 20 H -0.200 1.200 21 H -0.220 1.220 22 H -0.200 1.200 23 C -0.024 4.024 24 C -0.171 4.171 25 C -0.055 4.055 26 N -0.297 5.297 27 H 0.118 0.882 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.155 0.845 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.042 0.958 38 H 0.035 0.965 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.020 0.980 42 H 0.068 0.932 43 H 0.043 0.957 44 H 0.102 0.898 45 H 0.090 0.910 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -11.580 -16.946 -8.049 22.046 hybrid contribution 0.315 0.674 1.749 1.901 sum -11.264 -16.272 -6.300 20.769 Atomic orbital electron populations 1.23240 0.76474 1.03491 1.02606 1.86490 1.23319 1.33717 1.84408 1.23733 0.91881 0.81295 0.72239 1.90674 1.66867 1.36276 1.44079 1.21077 0.86699 0.95759 0.97401 0.87340 1.22093 0.96897 1.02986 0.96012 1.21720 0.94795 0.97046 1.01831 1.22241 0.98255 0.90824 0.95573 0.92840 1.60772 1.53357 1.05378 1.12167 1.21503 0.91798 0.88688 0.98820 0.91674 1.21489 0.96696 0.95048 0.99748 1.19632 0.95131 0.93181 0.97021 1.20049 1.06313 1.02920 1.21325 1.24850 0.95070 0.97815 0.95042 1.69830 1.23510 1.34212 1.25530 0.86648 0.80582 0.82943 0.77849 1.19966 1.21969 1.20021 1.19305 0.95194 0.91117 0.96819 1.22242 0.97708 0.98737 0.98455 1.22009 0.86324 1.02654 0.94495 1.60557 1.09648 1.02448 1.57057 0.88222 0.91946 0.91894 0.91023 0.90190 0.91179 0.91274 0.84529 0.94252 0.93338 0.95811 0.96499 0.92608 0.92714 0.98026 0.93233 0.95746 0.89842 0.91047 0.81130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.81 10.56 -39.25 -0.41 -4.22 16 3 C 0.47 5.77 7.20 36.01 0.26 6.03 16 4 O -0.49 -7.62 15.94 -18.75 -0.30 -7.91 16 5 C 0.10 1.11 2.93 -68.88 -0.20 0.91 16 6 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 7 C -0.14 -1.39 5.17 -26.65 -0.14 -1.53 16 8 C -0.12 -1.13 5.37 -26.61 -0.14 -1.27 16 9 C 0.04 0.52 2.63 -67.63 -0.18 0.34 16 10 H 0.05 0.71 7.21 -51.93 -0.37 0.33 16 11 N -0.69 -9.87 4.85 -99.70 -0.48 -10.35 16 12 C 0.10 1.81 2.17 -67.76 -0.15 1.66 16 13 H 0.07 1.21 7.21 -51.93 -0.37 0.84 16 14 C -0.09 -1.84 5.54 -26.64 -0.15 -1.99 16 15 C -0.01 -0.27 5.59 -27.49 -0.15 -0.42 16 16 C -0.49 -12.78 5.51 -98.92 -0.55 -13.33 16 17 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 18 N -0.89 -25.84 12.73 55.43 0.71 -25.14 16 19 Si 0.89 21.56 26.80 -169.99 -4.56 17.00 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 23 C 0.01 0.33 5.97 -27.49 -0.16 0.17 16 24 C -0.13 -2.67 5.17 -26.63 -0.14 -2.81 16 25 C 0.08 0.89 6.14 -3.83 -0.02 0.86 16 26 N -0.66 -8.41 6.27 -107.99 -0.68 -9.08 16 27 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.49 8.13 -51.92 -0.42 0.07 16 29 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.93 7.66 -51.93 -0.40 0.53 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 34 H 0.34 4.82 7.95 -39.29 -0.31 4.51 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.02 0.55 5.17 -51.93 -0.27 0.28 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.05 1.49 7.07 -51.93 -0.37 1.12 16 41 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.02 0.45 7.52 -51.93 -0.39 0.06 16 44 H 0.08 1.10 7.55 -51.93 -0.39 0.71 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.37 5.41 7.76 -39.29 -0.30 5.10 16 LS Contribution 353.10 15.07 5.32 5.32 Total: -1.00 -29.22 353.10 -8.96 -38.19 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.81 Total: 4.29 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -0.75 Total: -8.09 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -0.45 Total: -44.57 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -0.71 Total: -12.14 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.56 Total: 17.00 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.22 -8.96 -38.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246204316.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.348 kcal (2) G-P(sol) polarization free energy of solvation -29.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds