Wall clock time and date at job start Tue Mar 31 2020 03:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34228 * 117.00327 * 2 1 4 4 O 1.20827 * 119.99732 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00191 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.46045 * 39.98115 * 5 3 2 7 7 C 1.53038 * 109.46449 * 280.00260 * 5 3 2 8 8 C 1.53117 * 109.27596 * 180.80264 * 7 5 3 9 9 C 1.53120 * 109.15997 * 57.65554 * 8 7 5 10 10 H 1.09000 * 109.50084 * 182.36167 * 9 8 7 11 11 N 1.46906 * 109.50373 * 62.28604 * 9 8 7 12 12 C 1.46899 * 111.00235 * 153.81810 * 11 9 8 13 13 H 1.09003 * 109.41181 * 33.36291 * 12 11 9 14 14 C 1.52950 * 109.35739 * 153.18551 * 12 11 9 15 15 C 1.53226 * 109.40510 * 183.66958 * 14 12 11 16 16 C 1.51273 * 108.53577 * 305.37336 * 15 14 12 17 17 C 1.37882 * 120.84808 * 231.32536 * 16 15 14 18 18 N 1.31517 * 119.99823 * 180.02562 * 17 16 15 19 19 Si 1.86799 * 120.00174 * 0.02562 * 17 16 15 20 20 H 1.48494 * 109.47244 * 59.99903 * 19 17 16 21 21 H 1.48503 * 109.47094 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46756 * 299.99853 * 19 17 16 23 23 C 1.51265 * 118.30039 * 51.34635 * 16 15 14 24 24 C 1.52963 * 109.41059 * 273.50874 * 12 11 9 25 25 C 1.53031 * 109.27953 * 302.34311 * 9 8 7 26 26 N 1.46842 * 109.46008 * 159.94636 * 5 3 2 27 27 H 1.09000 * 109.47298 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.47031 * 299.99774 * 1 2 3 29 29 H 1.08996 * 109.47354 * 59.99964 * 1 2 3 30 30 H 1.08999 * 109.49849 * 60.86594 * 7 5 3 31 31 H 1.08997 * 109.53463 * 300.76263 * 7 5 3 32 32 H 1.08999 * 109.52430 * 297.74943 * 8 7 5 33 33 H 1.09003 * 109.57066 * 177.59140 * 8 7 5 34 34 H 1.00902 * 110.99735 * 29.85930 * 11 9 8 35 35 H 1.09000 * 109.48416 * 303.64943 * 14 12 11 36 36 H 1.09006 * 109.48207 * 63.68735 * 14 12 11 37 37 H 1.09006 * 109.62611 * 185.66259 * 15 14 12 38 38 H 1.08994 * 109.78601 * 65.17947 * 15 14 12 39 39 H 0.96998 * 119.99974 * 180.02562 * 18 17 16 40 40 H 1.09003 * 109.62671 * 188.93436 * 23 16 15 41 41 H 1.09005 * 109.62602 * 68.36679 * 23 16 15 42 42 H 1.09000 * 109.47959 * 296.33883 * 24 12 11 43 43 H 1.09000 * 109.48537 * 56.36906 * 24 12 11 44 44 H 1.08997 * 109.46512 * 179.19376 * 25 9 8 45 45 H 1.08998 * 109.46399 * 299.16425 * 25 9 8 46 46 H 1.00903 * 111.00080 * 57.66561 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9704 0.5072 -0.6595 7 6 4.0881 1.0515 1.4218 8 6 5.6160 1.1523 1.4210 9 6 6.0289 2.5227 0.8768 10 1 7.1163 2.5849 0.8345 11 7 5.5114 3.5771 1.7593 12 6 6.3404 4.7870 1.6763 13 1 6.7306 4.8900 0.6638 14 6 5.4883 6.0099 2.0196 15 6 6.3271 7.2802 1.8446 16 6 7.5848 7.1440 2.6740 17 6 7.9604 8.1347 3.5565 18 7 9.0575 7.9992 4.2690 19 14 6.9111 9.6692 3.7399 20 1 5.5486 9.2863 4.1893 21 1 7.5279 10.5736 4.7434 22 1 6.8231 10.3678 2.4324 23 6 8.4200 5.8936 2.5102 24 6 7.5053 4.6735 2.6611 25 6 5.4508 2.7034 -0.5285 26 7 3.9870 2.5991 -0.4743 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 3.7889 0.0622 1.7680 31 1 3.6737 1.8101 2.0856 32 1 6.0325 0.3686 0.7883 33 1 5.9901 1.0365 2.4383 34 1 5.4428 3.2502 2.7115 35 1 4.6252 6.0497 1.3551 36 1 5.1487 5.9379 3.0529 37 1 5.7568 8.1451 2.1836 38 1 6.5926 7.4053 0.7949 39 1 9.3216 8.6959 4.8900 40 1 9.1945 5.8676 3.2768 41 1 8.8792 5.8869 1.5216 42 1 7.1181 4.6332 3.6792 43 1 8.0717 3.7661 2.4514 44 1 5.7310 3.6840 -0.9132 45 1 5.8459 1.9291 -1.1861 46 1 3.5934 3.3305 0.0986 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246204316.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:37 Heat of formation + Delta-G solvation = -122.159058 kcal Electronic energy + Delta-G solvation = -25089.656221 eV Core-core repulsion = 21591.154178 eV Total energy + Delta-G solvation = -3498.502043 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.71018 -40.22922 -38.53858 -37.41114 -35.40006 -33.55295 -32.51606 -31.43238 -30.90599 -28.73930 -27.76015 -25.29965 -24.26968 -23.46222 -23.10835 -21.81333 -20.99186 -20.62025 -18.72702 -18.13389 -17.90819 -17.30321 -16.54304 -16.39343 -16.15205 -15.91321 -15.52900 -15.03738 -14.88841 -14.54798 -14.48325 -14.25425 -14.07491 -13.87971 -13.67944 -13.34594 -13.06925 -12.89917 -12.81643 -12.69575 -12.67321 -12.39657 -12.34582 -12.09582 -11.93697 -11.78429 -11.70477 -11.54427 -11.42493 -11.17747 -10.78673 -10.64177 -10.53889 -9.50826 -8.99723 -8.18321 -6.11188 1.18317 1.37837 1.38651 1.46551 1.68381 2.39365 3.06059 3.25612 3.46598 3.74965 3.85978 3.91817 4.08072 4.14042 4.21641 4.33036 4.34096 4.35297 4.40160 4.58534 4.66704 4.71140 4.72761 4.77234 4.84755 4.92493 4.97193 5.01810 5.06871 5.12583 5.13280 5.20947 5.29408 5.32326 5.36810 5.42643 5.61686 5.64073 5.77718 5.84816 5.99828 6.29464 6.34845 6.40847 6.58867 6.77122 6.95544 7.46623 8.92761 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.026276 B = 0.003422 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.364333 B = 8179.862316 C = 8772.598231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.468 3.532 4 O -0.532 6.532 5 C 0.103 3.897 6 H 0.132 0.868 7 C -0.133 4.133 8 C -0.108 4.108 9 C 0.042 3.958 10 H 0.048 0.952 11 N -0.678 5.678 12 C 0.116 3.884 13 H 0.063 0.937 14 C -0.085 4.085 15 C -0.015 4.015 16 C -0.496 4.496 17 C 0.020 3.980 18 N -0.934 5.934 19 Si 0.942 3.058 20 H -0.267 1.267 21 H -0.295 1.295 22 H -0.268 1.268 23 C 0.010 3.990 24 C -0.118 4.118 25 C 0.079 3.921 26 N -0.674 5.674 27 H 0.134 0.866 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.339 0.661 35 H 0.055 0.945 36 H 0.038 0.962 37 H 0.021 0.979 38 H 0.020 0.980 39 H 0.262 0.738 40 H 0.020 0.980 41 H -0.002 1.002 42 H 0.036 0.964 43 H 0.044 0.956 44 H 0.067 0.933 45 H 0.094 0.906 46 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.268 -19.612 -8.068 24.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.311 3.689 4 O -0.421 6.421 5 C -0.008 4.008 6 H 0.149 0.851 7 C -0.172 4.172 8 C -0.146 4.146 9 C -0.069 4.069 10 H 0.066 0.934 11 N -0.309 5.309 12 C 0.007 3.993 13 H 0.081 0.919 14 C -0.124 4.124 15 C -0.053 4.053 16 C -0.515 4.515 17 C -0.178 4.178 18 N -0.574 5.574 19 Si 0.769 3.231 20 H -0.192 1.192 21 H -0.221 1.221 22 H -0.193 1.193 23 C -0.029 4.029 24 C -0.158 4.158 25 C -0.051 4.051 26 N -0.305 5.305 27 H 0.152 0.848 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.158 0.842 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.040 0.960 38 H 0.039 0.961 39 H 0.071 0.929 40 H 0.039 0.961 41 H 0.016 0.984 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.085 0.915 45 H 0.112 0.888 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -12.952 -19.195 -9.085 24.874 hybrid contribution 0.720 1.262 2.003 2.475 sum -12.232 -17.932 -7.082 22.833 Atomic orbital electron populations 1.23523 0.75017 1.05668 1.02279 1.86483 1.24766 1.32631 1.83806 1.24075 0.92503 0.81195 0.71108 1.90661 1.67779 1.37580 1.46046 1.21201 0.85845 0.95309 0.98448 0.85056 1.22020 0.96827 1.03415 0.94938 1.21689 0.94575 0.95928 1.02412 1.22333 0.97844 0.91370 0.95386 0.93395 1.60682 1.52278 1.05134 1.12809 1.21180 0.90811 0.89688 0.97667 0.91875 1.21372 0.96946 0.94517 0.99528 1.19671 0.94288 0.94834 0.96495 1.20685 1.07128 1.02980 1.20742 1.25594 0.96130 1.00597 0.95486 1.69965 1.25375 1.35180 1.26902 0.85821 0.79364 0.80029 0.77931 1.19228 1.22134 1.19273 1.19282 0.95178 0.93103 0.95292 1.22057 0.97832 0.97359 0.98511 1.22004 0.85941 1.02626 0.94533 1.60555 1.09946 1.02968 1.57073 0.84806 0.92330 0.92260 0.89118 0.92085 0.88802 0.90934 0.84210 0.92677 0.94349 0.96013 0.96114 0.92913 0.96135 0.98379 0.94505 0.93720 0.91501 0.88753 0.82714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.58 16 2 O -0.36 -6.74 10.56 -51.39 -0.54 -7.29 16 3 C 0.47 10.74 7.20 71.24 0.51 11.26 16 4 O -0.53 -16.08 15.94 21.96 0.35 -15.73 16 5 C 0.10 1.96 2.93 44.19 0.13 2.09 16 6 H 0.13 1.91 8.14 -2.39 -0.02 1.90 16 7 C -0.13 -2.23 5.17 30.65 0.16 -2.07 16 8 C -0.11 -1.72 5.37 30.67 0.16 -1.56 16 9 C 0.04 0.90 2.63 44.96 0.12 1.02 16 10 H 0.05 1.13 7.21 -2.39 -0.02 1.11 16 11 N -0.68 -18.26 4.85 -469.34 -2.28 -20.54 16 12 C 0.12 4.03 2.17 44.89 0.10 4.12 16 13 H 0.06 2.26 7.21 -2.39 -0.02 2.24 16 14 C -0.09 -3.34 5.54 30.65 0.17 -3.17 16 15 C -0.01 -0.68 5.59 30.11 0.17 -0.51 16 16 C -0.50 -26.29 5.51 -16.17 -0.09 -26.38 16 17 C 0.02 1.10 5.46 84.66 0.46 1.56 16 18 N -0.93 -55.71 12.73 21.45 0.27 -55.44 16 19 Si 0.94 44.60 26.80 68.60 1.84 46.44 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 23 C 0.01 0.48 5.97 30.10 0.18 0.66 16 24 C -0.12 -4.71 5.17 30.66 0.16 -4.55 16 25 C 0.08 1.67 6.14 86.32 0.53 2.20 16 26 N -0.67 -15.75 6.27 -495.58 -3.11 -18.86 16 27 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.85 8.13 -2.38 -0.02 0.83 16 29 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.28 7.66 -2.39 -0.02 1.27 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 34 H 0.34 9.05 7.95 -89.69 -0.71 8.34 16 35 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.02 0.98 5.17 -2.38 -0.01 0.97 16 38 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 40 H 0.02 1.14 7.07 -2.39 -0.02 1.12 16 41 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 42 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.04 1.59 7.52 -2.39 -0.02 1.57 16 44 H 0.07 1.65 7.55 -2.39 -0.02 1.63 16 45 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 46 H 0.35 9.98 7.76 -89.69 -0.70 9.29 16 Total: -1.00 -64.55 353.10 0.07 -64.48 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -0.43 Total: 20.67 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 3.96 Total: -13.74 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -5.11 Total: -94.84 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.19 Total: -23.01 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.84 Total: 46.44 kcal Total: -64.55 0.07 -64.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246204316.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.675 kcal (2) G-P(sol) polarization free energy of solvation -64.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds