Wall clock time and date at job start Tue Mar 31 2020 03:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 111.00022 * 2 1 4 4 C 1.50695 * 109.47490 * 293.95190 * 3 2 1 5 5 H 1.08001 * 120.00064 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00398 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00311 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 119.99556 * 0.02562 * 6 4 3 9 9 H 1.48496 * 109.47427 * 90.00159 * 8 6 4 10 10 H 1.48501 * 109.46918 * 209.99833 * 8 6 4 11 11 H 1.48496 * 109.47538 * 329.99605 * 8 6 4 12 12 C 1.46897 * 111.00036 * 123.95670 * 2 1 3 13 13 C 1.53004 * 109.47420 * 66.04370 * 12 2 1 14 14 H 1.08998 * 109.46924 * 305.00385 * 13 12 2 15 15 O 1.42906 * 109.46892 * 64.99840 * 13 12 2 16 16 C 1.52993 * 109.47360 * 185.00010 * 13 12 2 17 17 N 1.46905 * 109.47039 * 180.02562 * 16 13 12 18 18 C 1.46901 * 110.99870 * 180.02562 * 17 16 13 19 19 C 1.53004 * 109.46916 * 180.02562 * 18 17 16 20 20 C 1.50703 * 109.46807 * 179.97438 * 19 18 17 21 21 C 1.35313 * 126.12428 * 84.68983 * 20 19 18 22 22 C 1.39872 * 107.91728 * 179.90468 * 21 20 19 23 23 N 1.30842 * 108.20221 * 0.36068 * 22 21 20 24 24 N 1.34946 * 126.12776 * 264.99534 * 20 19 18 25 25 C 1.46505 * 126.03583 * 359.94709 * 24 20 19 26 26 H 1.08994 * 109.46860 * 296.04367 * 1 2 3 27 27 H 1.08998 * 109.46744 * 56.04690 * 1 2 3 28 28 H 1.09004 * 109.47044 * 176.04407 * 1 2 3 29 29 H 1.08997 * 109.47453 * 53.95745 * 3 2 1 30 30 H 1.09009 * 109.46916 * 173.95393 * 3 2 1 31 31 H 0.96995 * 120.00208 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.47431 * 306.04688 * 12 2 1 33 33 H 1.08997 * 109.47363 * 186.04585 * 12 2 1 34 34 H 0.96709 * 113.99630 * 60.00107 * 15 13 12 35 35 H 1.09001 * 109.47393 * 60.00433 * 16 13 12 36 36 H 1.08998 * 109.47408 * 300.00078 * 16 13 12 37 37 H 1.00901 * 110.99869 * 56.04956 * 17 16 13 38 38 H 1.09004 * 109.47031 * 299.99620 * 18 17 16 39 39 H 1.08995 * 109.47111 * 59.99900 * 18 17 16 40 40 H 1.08995 * 109.46615 * 299.99641 * 19 18 17 41 41 H 1.08996 * 109.46939 * 60.00272 * 19 18 17 42 42 H 1.07998 * 126.04625 * 0.02947 * 21 20 19 43 43 H 1.08001 * 125.90025 * 180.14217 * 22 21 20 44 44 H 1.09002 * 109.46822 * 89.99508 * 25 24 20 45 45 H 1.08998 * 109.46983 * 209.99458 * 25 24 20 46 46 H 1.08998 * 109.46828 * 329.99960 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0740 1.5116 -2.0485 6 6 2.0269 3.3495 -1.5284 7 7 1.7136 3.9394 -2.6613 8 14 3.0000 4.2761 -0.2308 9 1 4.4524 4.0637 -0.4556 10 1 2.6918 5.7259 -0.3224 11 1 2.6294 3.7755 1.1172 12 6 1.9954 -0.7660 1.1375 13 6 1.6314 -2.2427 0.9703 14 1 0.5532 -2.3389 0.8432 15 8 2.2955 -2.7696 -0.1801 16 6 2.0699 -3.0200 2.2130 17 7 1.7209 -4.4379 2.0521 18 6 2.1274 -5.2169 3.2293 19 6 1.7488 -6.6852 3.0247 20 6 2.1664 -7.4845 4.2322 21 6 1.4546 -7.6375 5.3727 22 6 2.1948 -8.4520 6.2359 23 7 3.3144 -8.7699 5.6381 24 7 3.3197 -8.1711 4.3719 25 6 4.3885 -8.2725 3.3750 26 1 -0.3633 0.4512 0.9233 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3633 -1.0253 -0.0709 29 1 1.5612 1.9273 0.8309 30 1 3.0798 1.3443 0.1083 31 1 1.9876 4.8557 -2.8230 32 1 1.5611 -0.3874 2.0628 33 1 3.0797 -0.6612 1.1756 34 1 3.2602 -2.7167 -0.1361 35 1 1.5633 -2.6181 3.0905 36 1 3.1482 -2.9237 2.3401 37 1 2.1268 -4.8168 1.2096 38 1 3.2060 -5.1356 3.3641 39 1 1.6206 -4.8304 4.1135 40 1 0.6704 -6.7668 2.8897 41 1 2.2561 -7.0714 2.1407 42 1 0.4853 -7.2084 5.5793 43 1 1.8956 -8.7618 7.2264 44 1 5.1026 -7.4626 3.5242 45 1 4.8974 -9.2302 3.4841 46 1 3.9607 -8.2001 2.3751 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261436991.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:36 Heat of formation + Delta-G solvation = 34.238960 kcal Electronic energy + Delta-G solvation = -23261.326166 eV Core-core repulsion = 19801.898801 eV Total energy + Delta-G solvation = -3459.427365 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.195 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.56809 -38.54199 -36.57572 -35.42908 -33.70905 -32.64605 -32.44144 -30.11973 -28.39840 -27.45208 -27.08593 -25.76730 -23.61533 -22.59001 -21.46965 -21.23714 -20.14485 -19.98577 -17.23592 -16.91662 -16.61032 -16.14964 -15.82752 -15.34229 -15.13935 -14.92053 -14.52980 -14.27386 -14.19072 -13.90298 -13.81033 -13.29559 -13.09775 -12.85418 -12.74195 -12.67032 -12.39099 -12.24843 -11.99265 -11.66461 -11.51322 -11.24728 -10.99011 -10.93840 -10.82183 -10.56044 -10.33929 -10.06524 -9.68461 -9.56421 -9.25289 -8.85063 -8.70713 -8.58111 -7.35184 -6.05734 -4.02956 1.50432 2.16164 2.51140 3.26047 3.33720 3.34907 3.68353 4.18511 4.36108 4.40342 4.47511 4.59267 4.67780 4.75853 4.76975 4.81235 4.98231 5.04945 5.09618 5.16240 5.26881 5.29473 5.34998 5.42090 5.47347 5.55697 5.60103 5.60568 5.86911 5.91002 6.09718 6.22496 6.29035 6.32496 6.65033 6.67105 6.68478 6.84888 6.97718 7.12647 7.37383 7.56802 7.84798 7.88234 8.05842 8.65357 9.03939 9.55674 11.07406 Molecular weight = 296.20amu Principal moments of inertia in cm(-1) A = 0.035121 B = 0.002107 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.060469 B =13283.666215 C =13371.126374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.521 5.521 3 C 0.162 3.838 4 C -0.508 4.508 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.900 5.900 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.022 3.978 13 C 0.114 3.886 14 H 0.107 0.893 15 O -0.545 6.545 16 C 0.028 3.972 17 N -0.683 5.683 18 C 0.067 3.933 19 C -0.056 4.056 20 C 0.090 3.910 21 C -0.271 4.271 22 C 0.046 3.954 23 N -0.302 5.302 24 N -0.373 5.373 25 C 0.098 3.902 26 H 0.010 0.990 27 H 0.081 0.919 28 H 0.051 0.949 29 H -0.013 1.013 30 H 0.021 0.979 31 H 0.263 0.737 32 H 0.030 0.970 33 H 0.068 0.932 34 H 0.366 0.634 35 H 0.079 0.921 36 H 0.031 0.969 37 H 0.348 0.652 38 H 0.026 0.974 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.148 0.852 43 H 0.183 0.817 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.472 -23.703 15.318 28.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.244 5.244 3 C 0.036 3.964 4 C -0.546 4.546 5 H 0.100 0.900 6 C -0.134 4.134 7 N -0.539 5.539 8 Si 0.703 3.297 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.194 1.194 12 C -0.108 4.108 13 C 0.054 3.946 14 H 0.124 0.876 15 O -0.348 6.348 16 C -0.102 4.102 17 N -0.316 5.316 18 C -0.063 4.063 19 C -0.096 4.096 20 C -0.039 4.039 21 C -0.300 4.300 22 C -0.140 4.140 23 N -0.123 5.123 24 N -0.156 5.156 25 C -0.044 4.044 26 H 0.028 0.972 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.005 0.995 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.212 0.788 35 H 0.098 0.902 36 H 0.050 0.950 37 H 0.167 0.833 38 H 0.045 0.955 39 H 0.096 0.904 40 H 0.120 0.880 41 H 0.093 0.907 42 H 0.166 0.834 43 H 0.200 0.800 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.617 -24.425 14.795 28.677 hybrid contribution 1.132 1.620 1.547 2.509 sum 3.748 -22.806 16.342 28.306 Atomic orbital electron populations 1.22304 0.88198 1.00147 1.00759 1.61855 1.07427 1.16026 1.39124 1.20194 0.94729 0.84212 0.97307 1.21038 1.35566 0.97151 1.00858 0.90023 1.24911 0.95869 0.97373 0.95290 1.69889 1.46905 1.13246 1.23837 0.86866 0.80856 0.79339 0.82686 1.20196 1.21176 1.19404 1.22769 1.00324 0.94274 0.93437 1.21994 0.98518 0.90443 0.83640 0.87556 1.86637 1.22752 1.83764 1.41647 1.22681 0.98525 0.88803 1.00150 1.60322 1.64306 1.02136 1.04787 1.21874 0.97875 0.91819 0.94735 1.20240 1.03659 0.93008 0.92677 1.21040 0.87877 0.96845 0.98092 1.21291 1.04081 1.10013 0.94657 1.23854 0.91996 0.97749 1.00357 1.77372 1.22086 1.20830 0.92024 1.48521 1.15046 1.38928 1.13082 1.21865 0.88850 1.04173 0.89467 0.97198 0.90074 0.92997 0.99550 0.96063 0.92667 0.95182 0.91330 0.78821 0.90214 0.95033 0.83259 0.95544 0.90364 0.88009 0.90704 0.83413 0.80017 0.90734 0.89217 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.14 60.06 0.55 1.21 16 2 N -0.52 -10.79 4.70 -244.38 -1.15 -11.94 16 3 C 0.16 3.92 3.79 -4.98 -0.02 3.90 16 4 C -0.51 -14.49 9.01 -34.44 -0.31 -14.80 16 5 H 0.08 2.55 7.37 -52.49 -0.39 2.16 16 6 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 7 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 8 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 12 C 0.02 0.34 4.60 -3.82 -0.02 0.33 16 13 C 0.11 1.49 3.19 -26.73 -0.09 1.40 16 14 H 0.11 1.53 6.34 -51.93 -0.33 1.20 16 15 O -0.54 -7.53 12.62 -35.23 -0.44 -7.98 16 16 C 0.03 0.29 5.39 -3.82 -0.02 0.27 16 17 N -0.68 -6.22 6.50 -113.78 -0.74 -6.96 16 18 C 0.07 0.52 5.67 -3.82 -0.02 0.50 16 19 C -0.06 -0.38 5.76 -27.88 -0.16 -0.54 16 20 C 0.09 0.76 6.18 -82.26 -0.51 0.25 16 21 C -0.27 -2.33 10.72 -40.01 -0.43 -2.76 16 22 C 0.05 0.41 12.03 -17.36 -0.21 0.20 16 23 N -0.30 -3.27 12.58 30.63 0.39 -2.88 16 24 N -0.37 -3.40 4.01 -63.88 -0.26 -3.66 16 25 C 0.10 0.54 11.27 59.85 0.67 1.22 16 26 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 27 H 0.08 1.76 6.76 -51.93 -0.35 1.41 16 28 H 0.05 0.87 6.37 -51.93 -0.33 0.54 16 29 H -0.01 -0.32 7.18 -51.93 -0.37 -0.70 16 30 H 0.02 0.51 7.36 -51.92 -0.38 0.13 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 33 H 0.07 1.04 7.93 -51.93 -0.41 0.63 16 34 H 0.37 3.94 9.05 45.56 0.41 4.35 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.35 3.07 8.12 -39.29 -0.32 2.75 16 38 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.42 6.94 -51.93 -0.36 0.06 16 42 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 43 H 0.18 1.05 8.06 -52.49 -0.42 0.62 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.32 6.97 -51.93 -0.36 -0.04 16 LS Contribution 372.88 15.07 5.62 5.62 Total: -1.00 -34.22 372.88 -8.15 -42.37 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.01 Total: 2.46 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -0.66 Total: -6.98 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.99 Total: -52.25 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -0.44 Total: -7.98 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.22 -8.15 -42.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261436991.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.609 kcal (2) G-P(sol) polarization free energy of solvation -34.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds