Wall clock time and date at job start Tue Mar 31 2020 03:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 111.00022 * 2 1 4 4 C 1.50695 * 109.47490 * 293.95190 * 3 2 1 5 5 H 1.08001 * 120.00064 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00398 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00311 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 119.99556 * 0.02562 * 6 4 3 9 9 H 1.48496 * 109.47427 * 90.00159 * 8 6 4 10 10 H 1.48501 * 109.46918 * 209.99833 * 8 6 4 11 11 H 1.48496 * 109.47538 * 329.99605 * 8 6 4 12 12 C 1.46897 * 111.00036 * 123.95670 * 2 1 3 13 13 C 1.53004 * 109.47420 * 66.04370 * 12 2 1 14 14 H 1.08998 * 109.46924 * 305.00385 * 13 12 2 15 15 O 1.42906 * 109.46892 * 64.99840 * 13 12 2 16 16 C 1.52993 * 109.47360 * 185.00010 * 13 12 2 17 17 N 1.46905 * 109.47039 * 180.02562 * 16 13 12 18 18 C 1.46901 * 110.99870 * 180.02562 * 17 16 13 19 19 C 1.53004 * 109.46916 * 180.02562 * 18 17 16 20 20 C 1.50703 * 109.46807 * 179.97438 * 19 18 17 21 21 C 1.35313 * 126.12428 * 84.68983 * 20 19 18 22 22 C 1.39872 * 107.91728 * 179.90468 * 21 20 19 23 23 N 1.30842 * 108.20221 * 0.36068 * 22 21 20 24 24 N 1.34946 * 126.12776 * 264.99534 * 20 19 18 25 25 C 1.46505 * 126.03583 * 359.94709 * 24 20 19 26 26 H 1.08994 * 109.46860 * 296.04367 * 1 2 3 27 27 H 1.08998 * 109.46744 * 56.04690 * 1 2 3 28 28 H 1.09004 * 109.47044 * 176.04407 * 1 2 3 29 29 H 1.08997 * 109.47453 * 53.95745 * 3 2 1 30 30 H 1.09009 * 109.46916 * 173.95393 * 3 2 1 31 31 H 0.96995 * 120.00208 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.47431 * 306.04688 * 12 2 1 33 33 H 1.08997 * 109.47363 * 186.04585 * 12 2 1 34 34 H 0.96709 * 113.99630 * 60.00107 * 15 13 12 35 35 H 1.09001 * 109.47393 * 60.00433 * 16 13 12 36 36 H 1.08998 * 109.47408 * 300.00078 * 16 13 12 37 37 H 1.00901 * 110.99869 * 56.04956 * 17 16 13 38 38 H 1.09004 * 109.47031 * 299.99620 * 18 17 16 39 39 H 1.08995 * 109.47111 * 59.99900 * 18 17 16 40 40 H 1.08995 * 109.46615 * 299.99641 * 19 18 17 41 41 H 1.08996 * 109.46939 * 60.00272 * 19 18 17 42 42 H 1.07998 * 126.04625 * 0.02947 * 21 20 19 43 43 H 1.08001 * 125.90025 * 180.14217 * 22 21 20 44 44 H 1.09002 * 109.46822 * 89.99508 * 25 24 20 45 45 H 1.08998 * 109.46983 * 209.99458 * 25 24 20 46 46 H 1.08998 * 109.46828 * 329.99960 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0740 1.5116 -2.0485 6 6 2.0269 3.3495 -1.5284 7 7 1.7136 3.9394 -2.6613 8 14 3.0000 4.2761 -0.2308 9 1 4.4524 4.0637 -0.4556 10 1 2.6918 5.7259 -0.3224 11 1 2.6294 3.7755 1.1172 12 6 1.9954 -0.7660 1.1375 13 6 1.6314 -2.2427 0.9703 14 1 0.5532 -2.3389 0.8432 15 8 2.2955 -2.7696 -0.1801 16 6 2.0699 -3.0200 2.2130 17 7 1.7209 -4.4379 2.0521 18 6 2.1274 -5.2169 3.2293 19 6 1.7488 -6.6852 3.0247 20 6 2.1664 -7.4845 4.2322 21 6 1.4546 -7.6375 5.3727 22 6 2.1948 -8.4520 6.2359 23 7 3.3144 -8.7699 5.6381 24 7 3.3197 -8.1711 4.3719 25 6 4.3885 -8.2725 3.3750 26 1 -0.3633 0.4512 0.9233 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3633 -1.0253 -0.0709 29 1 1.5612 1.9273 0.8309 30 1 3.0798 1.3443 0.1083 31 1 1.9876 4.8557 -2.8230 32 1 1.5611 -0.3874 2.0628 33 1 3.0797 -0.6612 1.1756 34 1 3.2602 -2.7167 -0.1361 35 1 1.5633 -2.6181 3.0905 36 1 3.1482 -2.9237 2.3401 37 1 2.1268 -4.8168 1.2096 38 1 3.2060 -5.1356 3.3641 39 1 1.6206 -4.8304 4.1135 40 1 0.6704 -6.7668 2.8897 41 1 2.2561 -7.0714 2.1407 42 1 0.4853 -7.2084 5.5793 43 1 1.8956 -8.7618 7.2264 44 1 5.1026 -7.4626 3.5242 45 1 4.8974 -9.2302 3.4841 46 1 3.9607 -8.2001 2.3751 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261436991.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:35 Heat of formation + Delta-G solvation = 5.698515 kcal Electronic energy + Delta-G solvation = -23262.563773 eV Core-core repulsion = 19801.898801 eV Total energy + Delta-G solvation = -3460.664971 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.195 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.17512 -39.65686 -37.71433 -36.52402 -34.59916 -34.29937 -33.27344 -31.29736 -29.77414 -28.71897 -27.59801 -27.07864 -24.93940 -23.35247 -22.50169 -22.08202 -21.71958 -20.57502 -19.03084 -17.84330 -17.42403 -17.21566 -16.64878 -16.51597 -16.21341 -16.02551 -15.74919 -15.47505 -15.16878 -15.00065 -14.58021 -14.52320 -14.20575 -13.87272 -13.66650 -13.53169 -13.40098 -13.23710 -13.04222 -12.92136 -12.65409 -12.48548 -12.39419 -12.30906 -12.09721 -11.91418 -11.62035 -11.56457 -11.49764 -10.78562 -10.76504 -10.23419 -9.47734 -9.39028 -8.95948 -8.27671 -6.31322 0.88283 1.34391 1.36338 1.46775 1.64319 1.88456 2.34373 2.87146 3.05146 3.34669 3.70164 3.70839 3.82549 3.94145 4.06418 4.11715 4.20265 4.29594 4.34011 4.35580 4.43057 4.50757 4.55516 4.62345 4.66465 4.67970 4.72867 4.81198 4.84370 4.90892 4.92630 5.03188 5.04038 5.13617 5.28931 5.29395 5.53155 5.73794 5.95367 6.01250 6.10690 6.35823 6.45562 6.67237 6.74694 6.75490 6.98967 7.32081 8.89069 Molecular weight = 296.20amu Principal moments of inertia in cm(-1) A = 0.035121 B = 0.002107 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.060469 B =13283.666215 C =13371.126374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.541 5.541 3 C 0.172 3.828 4 C -0.517 4.517 5 H 0.035 0.965 6 C 0.004 3.996 7 N -0.949 5.949 8 Si 0.951 3.049 9 H -0.264 1.264 10 H -0.283 1.283 11 H -0.251 1.251 12 C 0.021 3.979 13 C 0.125 3.875 14 H 0.093 0.907 15 O -0.561 6.561 16 C 0.040 3.960 17 N -0.688 5.688 18 C 0.075 3.925 19 C -0.047 4.047 20 C 0.086 3.914 21 C -0.286 4.286 22 C 0.039 3.961 23 N -0.341 5.341 24 N -0.380 5.380 25 C 0.089 3.911 26 H 0.020 0.980 27 H 0.044 0.956 28 H 0.076 0.924 29 H -0.013 1.013 30 H 0.029 0.971 31 H 0.267 0.733 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.379 0.621 35 H 0.083 0.917 36 H 0.043 0.957 37 H 0.351 0.649 38 H 0.027 0.973 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.161 0.839 43 H 0.205 0.795 44 H 0.081 0.919 45 H 0.092 0.908 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.477 -24.397 17.312 30.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.264 5.264 3 C 0.044 3.956 4 C -0.555 4.555 5 H 0.053 0.947 6 C -0.193 4.193 7 N -0.590 5.590 8 Si 0.774 3.226 9 H -0.189 1.189 10 H -0.208 1.208 11 H -0.175 1.175 12 C -0.108 4.108 13 C 0.065 3.935 14 H 0.111 0.889 15 O -0.367 6.367 16 C -0.090 4.090 17 N -0.320 5.320 18 C -0.055 4.055 19 C -0.087 4.087 20 C -0.043 4.043 21 C -0.315 4.315 22 C -0.146 4.146 23 N -0.163 5.163 24 N -0.163 5.163 25 C -0.051 4.051 26 H 0.039 0.961 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.004 0.996 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.227 0.773 35 H 0.102 0.898 36 H 0.062 0.938 37 H 0.171 0.829 38 H 0.046 0.954 39 H 0.091 0.909 40 H 0.122 0.878 41 H 0.107 0.893 42 H 0.179 0.821 43 H 0.222 0.778 44 H 0.100 0.900 45 H 0.111 0.889 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.633 -25.157 16.801 30.469 hybrid contribution 0.764 1.750 0.844 2.088 sum 4.397 -23.407 17.645 29.641 Atomic orbital electron populations 1.22214 0.87795 1.01164 0.99654 1.61739 1.08044 1.14382 1.42270 1.19950 0.95099 0.85971 0.94531 1.21283 1.34848 0.97511 1.01874 0.94652 1.25906 0.97138 0.98473 0.97794 1.70056 1.48644 1.13874 1.26376 0.85664 0.79388 0.77547 0.79991 1.18854 1.20839 1.17464 1.22903 1.00740 0.95218 0.91940 1.21819 0.97807 0.89028 0.84809 0.88888 1.86604 1.24108 1.83695 1.42303 1.22484 0.99183 0.88995 0.98374 1.60281 1.64609 1.01751 1.05402 1.21786 0.97787 0.92033 0.93893 1.20186 1.03852 0.92160 0.92474 1.21330 0.87735 0.96675 0.98554 1.21596 1.04802 1.10265 0.94833 1.24322 0.91547 0.97372 1.01326 1.77309 1.23322 1.22382 0.93278 1.48808 1.15793 1.38705 1.13035 1.22127 0.88601 1.04672 0.89726 0.96104 0.93668 0.90534 0.99577 0.95272 0.92449 0.94048 0.90405 0.77262 0.89840 0.93846 0.82940 0.95445 0.90891 0.87839 0.89329 0.82142 0.77839 0.90041 0.88936 0.87379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.53 9.14 127.69 1.17 2.70 16 2 N -0.54 -21.89 4.70 -927.07 -4.36 -26.24 16 3 C 0.17 8.15 3.79 85.56 0.32 8.47 16 4 C -0.52 -30.15 9.01 25.60 0.23 -29.92 16 5 H 0.04 2.32 7.37 -2.91 -0.02 2.30 16 6 C 0.00 0.23 5.47 84.66 0.46 0.69 16 7 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 8 Si 0.95 43.75 27.47 68.60 1.88 45.63 16 9 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 12 C 0.02 0.61 4.60 86.31 0.40 1.01 16 13 C 0.13 2.97 3.19 30.59 0.10 3.07 16 14 H 0.09 2.48 6.34 -2.39 -0.02 2.46 16 15 O -0.56 -14.38 12.62 -148.98 -1.88 -16.26 16 16 C 0.04 0.68 5.39 86.30 0.47 1.15 16 17 N -0.69 -10.63 6.50 -513.88 -3.34 -13.97 16 18 C 0.07 0.97 5.67 86.30 0.49 1.45 16 19 C -0.05 -0.53 5.76 29.85 0.17 -0.36 16 20 C 0.09 1.32 6.18 41.41 0.26 1.58 16 21 C -0.29 -4.54 10.72 21.99 0.24 -4.30 16 22 C 0.04 0.66 12.03 85.24 1.03 1.69 16 23 N -0.34 -7.16 12.58 -57.02 -0.72 -7.88 16 24 N -0.38 -6.45 4.01 -356.02 -1.43 -7.88 16 25 C 0.09 0.85 11.27 127.77 1.44 2.29 16 26 H 0.02 0.73 8.14 -2.39 -0.02 0.72 16 27 H 0.04 2.03 6.76 -2.39 -0.02 2.01 16 28 H 0.08 2.52 6.37 -2.38 -0.02 2.50 16 29 H -0.01 -0.63 7.18 -2.39 -0.02 -0.65 16 30 H 0.03 1.34 7.36 -2.38 -0.02 1.32 16 31 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 32 H 0.04 1.14 8.12 -2.39 -0.02 1.12 16 33 H 0.08 2.13 7.93 -2.39 -0.02 2.11 16 34 H 0.38 7.27 9.05 -74.05 -0.67 6.60 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.35 5.20 8.12 -89.69 -0.73 4.47 16 38 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.09 0.75 6.94 -2.39 -0.02 0.74 16 42 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 43 H 0.20 2.12 8.06 -2.91 -0.02 2.10 16 44 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.11 0.54 6.97 -2.39 -0.02 0.53 16 Total: -1.00 -75.15 372.88 -3.26 -78.41 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -0.48 Total: 18.07 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: 6.76 Total: -10.49 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -9.55 Total: -115.36 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -1.88 Total: -16.26 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.88 Total: 45.63 kcal Total: -75.15 -3.26 -78.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261436991.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.108 kcal (2) G-P(sol) polarization free energy of solvation -75.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds