Wall clock time and date at job start Tue Mar 31 2020 03:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47504 * 2 1 4 4 O 1.42900 * 109.46940 * 239.99638 * 2 1 3 5 5 C 1.42898 * 114.00013 * 90.00181 * 4 2 1 6 6 C 1.52999 * 109.46923 * 179.97438 * 5 4 2 7 7 C 1.53007 * 117.49733 * 243.74523 * 6 5 4 8 8 C 1.53002 * 117.49554 * 175.09014 * 6 5 4 9 9 C 1.50702 * 109.46904 * 120.00075 * 2 1 3 10 10 O 1.21283 * 120.00072 * 114.99891 * 9 2 1 11 11 N 1.34781 * 120.00031 * 294.99662 * 9 2 1 12 12 C 1.46494 * 119.99955 * 180.02562 * 11 9 2 13 13 H 1.08996 * 109.49998 * 324.93360 * 12 11 9 14 14 C 1.53044 * 109.52382 * 204.85342 * 12 11 9 15 15 C 1.53043 * 109.53900 * 178.66732 * 14 12 11 16 16 C 1.52762 * 109.38024 * 61.24120 * 15 14 12 17 17 N 1.46923 * 109.00850 * 305.58475 * 16 15 14 18 18 C 1.36936 * 120.63133 * 233.58986 * 17 16 15 19 19 H 1.08001 * 120.00262 * 152.48147 * 18 17 16 20 20 C 1.38817 * 119.99857 * 332.47898 * 18 17 16 21 21 N 1.31615 * 120.00077 * 342.49527 * 20 18 17 22 22 Si 1.86805 * 119.99817 * 162.49092 * 20 18 17 23 23 H 1.48500 * 109.46871 * 84.98489 * 22 20 18 24 24 H 1.48503 * 109.47010 * 324.98577 * 22 20 18 25 25 H 1.48498 * 109.46858 * 204.98924 * 22 20 18 26 26 C 1.46929 * 118.73880 * 53.31466 * 17 16 15 27 27 H 1.08999 * 109.47510 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46917 * 300.00211 * 1 2 3 29 29 H 1.08997 * 109.46933 * 59.99801 * 1 2 3 30 30 H 1.09002 * 109.47054 * 300.00183 * 5 4 2 31 31 H 1.08997 * 109.46858 * 60.00022 * 5 4 2 32 32 H 1.08995 * 115.55299 * 29.42332 * 6 5 4 33 33 H 1.08998 * 117.49942 * 0.02562 * 7 6 5 34 34 H 1.08996 * 117.49201 * 145.02456 * 7 6 5 35 35 H 1.09002 * 117.49846 * 214.98446 * 8 6 5 36 36 H 1.09007 * 117.50005 * 359.97379 * 8 6 5 37 37 H 0.96994 * 120.00020 * 359.97438 * 11 9 2 38 38 H 1.09003 * 109.45591 * 298.69011 * 14 12 11 39 39 H 1.09002 * 109.45854 * 58.65457 * 14 12 11 40 40 H 1.08995 * 109.49542 * 181.31386 * 15 14 12 41 41 H 1.08992 * 109.49605 * 301.38032 * 15 14 12 42 42 H 1.09006 * 109.50749 * 185.70770 * 16 15 14 43 43 H 1.08994 * 109.43486 * 65.42636 * 16 15 14 44 44 H 0.96998 * 119.99580 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.58510 * 66.42989 * 26 17 16 46 46 H 1.08999 * 109.58643 * 186.85883 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2001 0.1828 -2.2941 6 6 2.7090 -0.6409 -3.4787 7 6 4.1072 -0.3220 -4.0121 8 6 2.8700 0.0764 -4.8206 9 6 2.0323 -0.7104 1.2305 10 8 2.6529 -1.7467 1.1215 11 7 1.7919 -0.1942 2.4521 12 6 2.2806 -0.8845 3.6482 13 1 2.2329 -1.9621 3.4913 14 6 1.4117 -0.5042 4.8492 15 6 1.9014 -1.2508 6.0922 16 6 3.3438 -0.8461 6.3911 17 7 4.1619 -1.0694 5.1913 18 6 5.3018 -1.8256 5.2549 19 1 5.6492 -2.3535 4.3791 20 6 6.0108 -1.9135 6.4451 21 7 5.8089 -1.0287 7.3983 22 14 7.2515 -3.2877 6.6938 23 1 8.5572 -2.8873 6.1105 24 1 6.7664 -4.5201 6.0221 25 1 7.4171 -3.5482 8.1463 26 6 3.7304 -0.4711 3.9206 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.2538 0.6545 -2.5588 31 1 2.9320 0.9511 -2.0450 32 1 2.3876 -1.6821 -3.5001 33 1 4.6646 0.4743 -3.5188 34 1 4.7054 -1.1535 -4.3847 35 1 2.6547 -0.4931 -5.7247 36 1 2.6128 1.1350 -4.8595 37 1 1.2959 0.6348 2.5392 38 1 1.4794 0.5702 5.0206 39 1 0.3752 -0.7751 4.6478 40 1 1.2676 -0.9973 6.9420 41 1 1.8567 -2.3248 5.9125 42 1 3.7284 -1.4500 7.2131 43 1 3.3755 0.2086 6.6639 44 1 6.3041 -1.0905 8.2301 45 1 3.7942 0.6149 3.9878 46 1 4.3698 -0.8276 3.1131 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267913823.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:20 Heat of formation + Delta-G solvation = -41.795991 kcal Electronic energy + Delta-G solvation = -24384.023354 eV Core-core repulsion = 20889.006115 eV Total energy + Delta-G solvation = -3495.017239 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.94885 -38.49562 -37.37909 -36.50247 -34.29434 -32.60952 -31.48973 -30.43905 -28.48381 -27.32204 -25.26277 -24.33026 -22.65213 -22.12109 -21.81427 -21.03374 -20.04709 -19.28511 -17.32372 -17.09575 -16.67906 -15.95200 -15.72628 -15.11226 -14.68440 -14.64747 -14.36073 -13.94257 -13.82414 -13.47043 -13.19156 -13.02629 -12.70678 -12.55617 -12.39405 -12.32142 -11.85488 -11.81133 -11.72820 -11.23257 -11.06147 -10.86299 -10.73971 -10.72528 -10.54126 -10.24500 -10.22592 -9.93595 -9.87617 -9.76810 -9.61231 -9.23958 -8.79005 -8.36727 -6.64803 -5.75559 -3.16831 2.84559 2.87065 3.42534 3.48164 3.48923 3.53617 3.83002 4.51091 4.55196 4.59707 4.66331 4.76540 4.79712 4.93043 5.04948 5.16071 5.29543 5.32971 5.35881 5.37225 5.41210 5.49436 5.55995 5.63577 5.64254 5.73353 5.82742 5.87169 5.94991 6.10059 6.17514 6.25524 6.54398 6.63247 6.69221 6.70936 6.85934 6.93603 7.04948 7.38273 7.66656 7.77059 7.86484 8.45979 8.52079 9.25370 9.87830 10.43113 11.33356 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.017520 B = 0.003336 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.755161 B = 8390.363995 C = 9656.911502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.071 3.929 3 H 0.084 0.916 4 O -0.352 6.352 5 C 0.091 3.909 6 C -0.152 4.152 7 C -0.176 4.176 8 C -0.175 4.175 9 C 0.510 3.490 10 O -0.514 6.514 11 N -0.721 5.721 12 C 0.127 3.873 13 H 0.086 0.914 14 C -0.114 4.114 15 C -0.140 4.140 16 C 0.167 3.833 17 N -0.588 5.588 18 C -0.250 4.250 19 H 0.067 0.933 20 C 0.002 3.998 21 N -0.905 5.905 22 Si 0.902 3.098 23 H -0.286 1.286 24 H -0.279 1.279 25 H -0.290 1.290 26 C 0.142 3.858 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.115 0.885 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.393 0.607 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.090 0.910 43 H 0.018 0.982 44 H 0.253 0.747 45 H 0.017 0.983 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.730 6.805 -17.082 22.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.010 3.990 3 H 0.102 0.898 4 O -0.270 6.270 5 C 0.014 3.986 6 C -0.170 4.170 7 C -0.213 4.213 8 C -0.212 4.212 9 C 0.293 3.707 10 O -0.387 6.387 11 N -0.374 5.374 12 C 0.022 3.978 13 H 0.104 0.896 14 C -0.152 4.152 15 C -0.179 4.179 16 C 0.041 3.959 17 N -0.310 5.310 18 C -0.379 4.379 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.549 5.549 22 Si 0.732 3.268 23 H -0.213 1.213 24 H -0.205 1.205 25 H -0.216 1.216 26 C 0.015 3.985 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.133 0.867 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.227 0.773 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.108 0.892 43 H 0.036 0.964 44 H 0.063 0.937 45 H 0.035 0.965 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.118 5.829 -17.006 21.680 hybrid contribution 0.339 0.121 0.222 0.423 sum -11.779 5.950 -16.784 21.351 Atomic orbital electron populations 1.22223 0.93750 1.03831 1.02853 1.21908 0.94889 0.96275 0.85970 0.89842 1.88062 1.86475 1.33816 1.18688 1.22106 0.99070 0.92027 0.85394 1.22100 1.00598 1.01096 0.93186 1.23088 0.90842 1.03674 1.03667 1.22987 1.02783 1.00982 0.94479 1.20261 0.80322 0.85864 0.84204 1.90758 1.38761 1.23031 1.86175 1.46071 1.57878 1.27600 1.05849 1.21750 0.96226 0.97799 0.82063 0.89591 1.21675 0.97633 1.00496 0.95405 1.22110 1.00392 0.99978 0.95457 1.20756 0.85854 0.98481 0.90813 1.43988 1.25081 1.58748 1.03230 1.19217 1.00604 1.20679 0.97430 0.91573 1.25005 0.98066 0.98317 0.98261 1.70040 1.43906 1.33847 1.07146 0.86312 0.81235 0.82401 0.76866 1.21301 1.20459 1.21569 1.21185 0.91812 0.95238 0.90300 0.91049 0.90921 0.91467 0.92840 0.93031 0.86700 0.88572 0.88497 0.88444 0.88745 0.77348 0.92250 0.93078 0.92676 0.92422 0.89231 0.96367 0.93686 0.96526 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 9.48 37.16 0.35 -1.12 16 2 C 0.07 0.84 3.13 -27.88 -0.09 0.75 16 3 H 0.08 0.77 7.79 -51.93 -0.40 0.36 16 4 O -0.35 -4.84 9.53 -55.09 -0.52 -5.37 16 5 C 0.09 0.91 6.03 37.16 0.22 1.13 16 6 C -0.15 -1.47 6.05 -90.62 -0.55 -2.02 16 7 C -0.18 -1.55 10.18 -26.69 -0.27 -1.82 16 8 C -0.18 -1.28 10.25 -26.69 -0.27 -1.56 16 9 C 0.51 8.16 7.14 -10.98 -0.08 8.08 16 10 O -0.51 -11.02 16.17 -14.31 -0.23 -11.25 16 11 N -0.72 -10.35 5.04 -53.69 -0.27 -10.62 16 12 C 0.13 2.31 2.60 -67.81 -0.18 2.13 16 13 H 0.09 1.82 7.58 -51.93 -0.39 1.42 16 14 C -0.11 -1.83 5.36 -26.69 -0.14 -1.97 16 15 C -0.14 -2.61 6.07 -26.83 -0.16 -2.78 16 16 C 0.17 3.97 5.29 -3.93 -0.02 3.95 16 17 N -0.59 -15.20 3.00 -172.58 -0.52 -15.71 16 18 C -0.25 -7.16 9.59 -15.06 -0.14 -7.30 16 19 H 0.07 1.92 7.89 -52.49 -0.41 1.50 16 20 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 21 N -0.90 -26.57 11.18 55.49 0.62 -25.95 16 22 Si 0.90 22.36 29.59 -169.99 -5.03 17.33 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 C 0.14 3.16 6.09 -3.71 -0.02 3.14 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.50 7.93 -51.92 -0.41 0.09 16 29 H 0.07 0.47 7.87 -51.93 -0.41 0.06 16 30 H 0.05 0.42 7.87 -51.93 -0.41 0.01 16 31 H 0.05 0.48 7.82 -51.93 -0.41 0.07 16 32 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.10 0.82 8.03 -51.93 -0.42 0.41 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.59 8.14 -51.92 -0.42 0.16 16 37 H 0.39 4.15 8.39 -40.82 -0.34 3.81 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.09 2.39 6.03 -51.93 -0.31 2.08 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 1.39 7.93 -51.93 -0.41 0.98 16 LS Contribution 370.99 15.07 5.59 5.59 Total: -1.00 -33.97 370.99 -9.92 -43.89 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -8.12 Total: 1.51 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -1.44 Total: 0.58 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: -0.17 Total: -52.28 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.76 Total: -16.62 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.97 -9.92 -43.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267913823.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.094 kcal (2) G-P(sol) polarization free energy of solvation -33.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds