Wall clock time and date at job start Tue Mar 31 2020 03:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47504 * 2 1 4 4 O 1.42900 * 109.46940 * 239.99638 * 2 1 3 5 5 C 1.42898 * 114.00013 * 90.00181 * 4 2 1 6 6 C 1.52999 * 109.46923 * 179.97438 * 5 4 2 7 7 C 1.53007 * 117.49733 * 243.74523 * 6 5 4 8 8 C 1.53002 * 117.49554 * 175.09014 * 6 5 4 9 9 C 1.50702 * 109.46904 * 120.00075 * 2 1 3 10 10 O 1.21283 * 120.00072 * 114.99891 * 9 2 1 11 11 N 1.34781 * 120.00031 * 294.99662 * 9 2 1 12 12 C 1.46494 * 119.99955 * 180.02562 * 11 9 2 13 13 H 1.08996 * 109.49998 * 324.93360 * 12 11 9 14 14 C 1.53044 * 109.52382 * 204.85342 * 12 11 9 15 15 C 1.53043 * 109.53900 * 178.66732 * 14 12 11 16 16 C 1.52762 * 109.38024 * 61.24120 * 15 14 12 17 17 N 1.46923 * 109.00850 * 305.58475 * 16 15 14 18 18 C 1.36936 * 120.63133 * 233.58986 * 17 16 15 19 19 H 1.08001 * 120.00262 * 152.48147 * 18 17 16 20 20 C 1.38817 * 119.99857 * 332.47898 * 18 17 16 21 21 N 1.31615 * 120.00077 * 342.49527 * 20 18 17 22 22 Si 1.86805 * 119.99817 * 162.49092 * 20 18 17 23 23 H 1.48500 * 109.46871 * 84.98489 * 22 20 18 24 24 H 1.48503 * 109.47010 * 324.98577 * 22 20 18 25 25 H 1.48498 * 109.46858 * 204.98924 * 22 20 18 26 26 C 1.46929 * 118.73880 * 53.31466 * 17 16 15 27 27 H 1.08999 * 109.47510 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46917 * 300.00211 * 1 2 3 29 29 H 1.08997 * 109.46933 * 59.99801 * 1 2 3 30 30 H 1.09002 * 109.47054 * 300.00183 * 5 4 2 31 31 H 1.08997 * 109.46858 * 60.00022 * 5 4 2 32 32 H 1.08995 * 115.55299 * 29.42332 * 6 5 4 33 33 H 1.08998 * 117.49942 * 0.02562 * 7 6 5 34 34 H 1.08996 * 117.49201 * 145.02456 * 7 6 5 35 35 H 1.09002 * 117.49846 * 214.98446 * 8 6 5 36 36 H 1.09007 * 117.50005 * 359.97379 * 8 6 5 37 37 H 0.96994 * 120.00020 * 359.97438 * 11 9 2 38 38 H 1.09003 * 109.45591 * 298.69011 * 14 12 11 39 39 H 1.09002 * 109.45854 * 58.65457 * 14 12 11 40 40 H 1.08995 * 109.49542 * 181.31386 * 15 14 12 41 41 H 1.08992 * 109.49605 * 301.38032 * 15 14 12 42 42 H 1.09006 * 109.50749 * 185.70770 * 16 15 14 43 43 H 1.08994 * 109.43486 * 65.42636 * 16 15 14 44 44 H 0.96998 * 119.99580 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.58510 * 66.42989 * 26 17 16 46 46 H 1.08999 * 109.58643 * 186.85883 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2001 0.1828 -2.2941 6 6 2.7090 -0.6409 -3.4787 7 6 4.1072 -0.3220 -4.0121 8 6 2.8700 0.0764 -4.8206 9 6 2.0323 -0.7104 1.2305 10 8 2.6529 -1.7467 1.1215 11 7 1.7919 -0.1942 2.4521 12 6 2.2806 -0.8845 3.6482 13 1 2.2329 -1.9621 3.4913 14 6 1.4117 -0.5042 4.8492 15 6 1.9014 -1.2508 6.0922 16 6 3.3438 -0.8461 6.3911 17 7 4.1619 -1.0694 5.1913 18 6 5.3018 -1.8256 5.2549 19 1 5.6492 -2.3535 4.3791 20 6 6.0108 -1.9135 6.4451 21 7 5.8089 -1.0287 7.3983 22 14 7.2515 -3.2877 6.6938 23 1 8.5572 -2.8873 6.1105 24 1 6.7664 -4.5201 6.0221 25 1 7.4171 -3.5482 8.1463 26 6 3.7304 -0.4711 3.9206 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.2538 0.6545 -2.5588 31 1 2.9320 0.9511 -2.0450 32 1 2.3876 -1.6821 -3.5001 33 1 4.6646 0.4743 -3.5188 34 1 4.7054 -1.1535 -4.3847 35 1 2.6547 -0.4931 -5.7247 36 1 2.6128 1.1350 -4.8595 37 1 1.2959 0.6348 2.5392 38 1 1.4794 0.5702 5.0206 39 1 0.3752 -0.7751 4.6478 40 1 1.2676 -0.9973 6.9420 41 1 1.8567 -2.3248 5.9125 42 1 3.7284 -1.4500 7.2131 43 1 3.3755 0.2086 6.6639 44 1 6.3041 -1.0905 8.2301 45 1 3.7942 0.6149 3.9878 46 1 4.3698 -0.8276 3.1131 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267913823.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:18 Heat of formation + Delta-G solvation = -63.877595 kcal Electronic energy + Delta-G solvation = -24384.980884 eV Core-core repulsion = 20889.006115 eV Total energy + Delta-G solvation = -3495.974769 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.19888 -39.55917 -38.76959 -37.42743 -35.95324 -34.28171 -32.54740 -32.36215 -30.01423 -28.05947 -27.27893 -25.40161 -23.89802 -23.35374 -23.25148 -21.81105 -21.37335 -20.86002 -18.74413 -18.31218 -18.10908 -17.09135 -16.80197 -16.68985 -16.16756 -15.86028 -15.65784 -15.29838 -15.20665 -14.92589 -14.61306 -14.24152 -14.04870 -13.90711 -13.61346 -13.42379 -13.20635 -13.04524 -12.75460 -12.65457 -12.54155 -12.38457 -12.14759 -12.01078 -11.97840 -11.74432 -11.57537 -11.41092 -11.32811 -11.28394 -10.83078 -10.63179 -10.36766 -10.11622 -8.71555 -7.92936 -5.37585 1.42418 1.43545 1.54280 1.60237 1.82396 2.47550 2.70493 3.00942 3.21147 3.59523 3.76166 3.84690 3.89775 3.92328 3.96324 4.06469 4.11759 4.17271 4.24726 4.33883 4.46928 4.47618 4.56815 4.67446 4.73988 4.76647 4.80095 4.83161 4.92051 5.00071 5.00868 5.12091 5.14810 5.20741 5.22626 5.24299 5.27329 5.46178 5.55137 5.61518 5.75651 6.13415 6.34701 6.62902 7.10934 7.30519 7.80799 8.29927 9.12776 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.017520 B = 0.003336 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.755161 B = 8390.363995 C = 9656.911502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.076 3.924 3 H 0.116 0.884 4 O -0.390 6.390 5 C 0.088 3.912 6 C -0.174 4.174 7 C -0.190 4.190 8 C -0.149 4.149 9 C 0.503 3.497 10 O -0.579 6.579 11 N -0.702 5.702 12 C 0.142 3.858 13 H 0.052 0.948 14 C -0.102 4.102 15 C -0.131 4.131 16 C 0.170 3.830 17 N -0.608 5.608 18 C -0.271 4.271 19 H 0.050 0.950 20 C -0.042 4.042 21 N -0.928 5.928 22 Si 0.964 3.036 23 H -0.282 1.282 24 H -0.278 1.278 25 H -0.283 1.283 26 C 0.145 3.855 27 H 0.051 0.949 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.418 0.582 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.044 0.956 42 H 0.054 0.946 43 H 0.007 0.993 44 H 0.253 0.747 45 H 0.025 0.975 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.025 8.649 -18.011 24.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.015 3.985 3 H 0.133 0.867 4 O -0.309 6.309 5 C 0.012 3.988 6 C -0.193 4.193 7 C -0.227 4.227 8 C -0.186 4.186 9 C 0.290 3.710 10 O -0.457 6.457 11 N -0.356 5.356 12 C 0.035 3.965 13 H 0.070 0.930 14 C -0.140 4.140 15 C -0.170 4.170 16 C 0.045 3.955 17 N -0.332 5.332 18 C -0.401 4.401 19 H 0.067 0.933 20 C -0.238 4.238 21 N -0.573 5.573 22 Si 0.792 3.208 23 H -0.209 1.209 24 H -0.204 1.204 25 H -0.208 1.208 26 C 0.018 3.982 27 H 0.071 0.929 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.256 0.744 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.025 0.975 44 H 0.062 0.938 45 H 0.043 0.957 46 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -14.465 7.729 -17.950 24.315 hybrid contribution 1.101 -0.429 0.461 1.269 sum -13.364 7.300 -17.489 23.190 Atomic orbital electron populations 1.22225 0.90943 1.03391 1.05345 1.22025 0.96759 0.96479 0.83273 0.86654 1.88028 1.86977 1.35926 1.20001 1.22299 1.00583 0.91678 0.84222 1.22145 1.01441 1.00771 0.94893 1.23165 0.91070 1.03876 1.04632 1.23081 1.00257 1.01820 0.93435 1.21257 0.78903 0.85147 0.85730 1.90733 1.41727 1.26116 1.87141 1.45791 1.57264 1.28115 1.04413 1.21247 0.94332 0.96252 0.84674 0.92983 1.21608 0.98743 1.01277 0.92398 1.21955 0.97301 0.99560 0.98206 1.20652 0.88591 0.97073 0.89157 1.44216 1.25010 1.59049 1.04919 1.19361 1.01982 1.21421 0.97320 0.93264 1.25693 0.99954 1.00305 0.97891 1.70160 1.44786 1.35029 1.07328 0.85352 0.78997 0.79575 0.76887 1.20867 1.20367 1.20822 1.21214 0.93943 0.95151 0.87882 0.92949 0.88430 0.88953 0.90175 0.92473 0.88479 0.88528 0.88814 0.87347 0.86948 0.74430 0.90166 0.89213 0.89449 0.93690 0.92733 0.97480 0.93768 0.95740 0.95750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.48 71.98 0.68 -1.60 16 2 C 0.08 1.62 3.13 29.85 0.09 1.71 16 3 H 0.12 1.72 7.79 -2.39 -0.02 1.70 16 4 O -0.39 -10.49 9.53 -129.99 -1.24 -11.73 16 5 C 0.09 1.61 6.03 71.98 0.43 2.05 16 6 C -0.17 -3.27 6.05 -10.79 -0.07 -3.34 16 7 C -0.19 -3.27 10.18 30.62 0.31 -2.96 16 8 C -0.15 -1.89 10.25 30.62 0.31 -1.57 16 9 C 0.50 15.90 7.14 87.66 0.63 16.53 16 10 O -0.58 -25.95 16.17 15.95 0.26 -25.69 16 11 N -0.70 -18.90 5.04 -442.16 -2.23 -21.13 16 12 C 0.14 5.07 2.60 45.07 0.12 5.19 16 13 H 0.05 2.26 7.58 -2.39 -0.02 2.24 16 14 C -0.10 -2.97 5.36 30.62 0.16 -2.81 16 15 C -0.13 -4.70 6.07 30.53 0.19 -4.51 16 16 C 0.17 8.22 5.29 86.22 0.46 8.68 16 17 N -0.61 -32.46 3.00 -699.92 -2.10 -34.56 16 18 C -0.27 -16.16 9.59 84.03 0.81 -15.36 16 19 H 0.05 3.03 7.89 -2.91 -0.02 3.00 16 20 C -0.04 -2.48 4.91 84.86 0.42 -2.06 16 21 N -0.93 -55.72 11.18 21.65 0.24 -55.48 16 22 Si 0.96 47.12 29.59 68.60 2.03 49.15 16 23 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 24 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 25 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 26 C 0.15 6.61 6.09 86.36 0.53 7.13 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.10 0.88 7.93 -2.38 -0.02 0.86 16 29 H 0.09 0.88 7.87 -2.39 -0.02 0.86 16 30 H 0.08 1.01 7.87 -2.39 -0.02 0.99 16 31 H 0.06 0.96 7.82 -2.39 -0.02 0.94 16 32 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.10 1.61 8.03 -2.39 -0.02 1.59 16 34 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.42 7.21 8.39 -92.71 -0.78 6.43 16 38 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.05 3.00 6.03 -2.38 -0.01 2.98 16 43 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 44 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 45 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.02 1.23 7.93 -2.39 -0.02 1.21 16 Total: -1.00 -79.68 370.99 2.20 -77.48 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.17 Total: 14.88 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 5.07 Total: 7.08 kcal Atomic # 7 Polarization: -107.08 SS G_CDS: -4.09 Total: -111.17 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -0.98 Total: -37.42 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -79.68 2.20 -77.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267913823.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.604 kcal (2) G-P(sol) polarization free energy of solvation -79.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds