Wall clock time and date at job start Tue Mar 31 2020 03:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46833 * 124.34992 * 2 1 4 4 C 1.54269 * 105.46634 * 196.82858 * 3 2 1 5 5 C 1.54526 * 101.91991 * 334.77061 * 4 3 2 6 6 C 1.34412 * 124.34952 * 179.70277 * 2 1 3 7 7 O 1.21277 * 124.94502 * 359.65883 * 6 2 1 8 8 C 1.54319 * 108.66752 * 89.08827 * 4 3 2 9 9 O 1.40395 * 108.81410 * 48.47273 * 8 4 3 10 10 C 1.44195 * 117.18515 * 92.90589 * 9 8 4 11 11 C 1.53823 * 112.87682 * 317.87163 * 10 9 8 12 12 N 1.44359 * 112.18602 * 318.43173 * 11 10 9 13 13 C 1.46896 * 111.00225 * 215.86860 * 12 11 10 14 14 C 1.52996 * 109.47079 * 66.99799 * 13 12 11 15 15 C 1.53000 * 109.47121 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.46856 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00228 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99822 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00189 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00223 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.47035 * 89.99944 * 20 18 16 22 22 H 1.48494 * 109.47496 * 209.99783 * 20 18 16 23 23 H 1.48500 * 109.46951 * 330.00339 * 20 18 16 24 24 C 1.46548 * 112.92254 * 213.76047 * 4 3 2 25 25 H 1.09002 * 109.47391 * 89.99674 * 1 2 3 26 26 H 1.09001 * 109.46813 * 329.99731 * 1 2 3 27 27 H 1.09004 * 109.47041 * 209.99858 * 1 2 3 28 28 H 1.09003 * 110.25086 * 315.82420 * 3 2 1 29 29 H 1.09002 * 110.24751 * 77.74663 * 3 2 1 30 30 H 1.09000 * 110.49535 * 143.30393 * 5 4 3 31 31 H 1.08999 * 110.49698 * 265.96883 * 5 4 3 32 32 H 1.09000 * 109.58544 * 168.27276 * 8 4 3 33 33 H 1.09000 * 109.58414 * 288.68072 * 8 4 3 34 34 H 1.09005 * 108.80072 * 196.99647 * 10 9 8 35 35 H 1.08998 * 108.80335 * 78.74766 * 10 9 8 36 36 H 1.08995 * 108.94164 * 197.73820 * 11 10 9 37 37 H 1.08994 * 108.86787 * 79.07815 * 11 10 9 38 38 H 1.08998 * 109.47019 * 186.99516 * 13 12 11 39 39 H 1.08998 * 109.46769 * 306.99483 * 13 12 11 40 40 H 1.09005 * 109.46946 * 300.00127 * 14 13 12 41 41 H 1.09000 * 109.47643 * 59.99650 * 14 13 12 42 42 H 1.08998 * 109.46845 * 299.99637 * 15 14 13 43 43 H 1.08991 * 109.47223 * 59.99857 * 15 14 13 44 44 H 0.97000 * 120.00737 * 179.97438 * 19 18 16 45 45 H 1.08994 * 108.90834 * 58.52705 * 24 4 3 46 46 H 1.08996 * 108.90521 * 177.14695 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2935 1.2123 0.0000 4 6 3.7006 0.7489 -0.4304 5 6 3.6902 -0.7375 -0.0082 6 6 2.2234 -1.1097 0.0058 7 8 1.7946 -2.2441 0.0176 8 6 3.7939 0.8175 -1.9693 9 8 3.3187 2.0676 -2.3965 10 6 4.2906 3.1192 -2.5654 11 6 5.3319 3.1586 -1.4339 12 7 4.7356 2.9453 -0.1367 13 6 5.4035 3.7567 0.8897 14 6 5.1304 5.2387 0.6256 15 6 5.8265 6.0839 1.6942 16 6 5.5580 7.5437 1.4337 17 1 4.9518 7.8392 0.5901 18 6 6.0862 8.5022 2.2723 19 7 6.8248 8.1426 3.2993 20 14 5.7540 10.3118 1.9491 21 1 4.5188 10.7236 2.6634 22 1 6.9003 11.1203 2.4363 23 1 5.5786 10.5300 0.4907 24 6 4.7742 1.5095 0.2149 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 0.8900 0.5139 27 1 -0.3633 -0.8900 0.5138 28 1 1.9008 1.9376 -0.7126 29 1 2.3271 1.6462 0.9994 30 1 4.2334 -1.3439 -0.7330 31 1 4.1194 -0.8547 0.9868 32 1 4.8323 0.6965 -2.2781 33 1 3.1858 0.0263 -2.4078 34 1 3.7703 4.0766 -2.5975 35 1 4.8075 2.9709 -3.5135 36 1 5.8254 4.1304 -1.4408 37 1 6.0763 2.3828 -1.6128 38 1 5.0197 3.4862 1.8733 39 1 6.4774 3.5734 0.8556 40 1 5.5141 5.5093 -0.3581 41 1 4.0564 5.4221 0.6595 42 1 5.4431 5.8135 2.6780 43 1 6.9004 5.9006 1.6598 44 1 7.1968 8.8168 3.8891 45 1 4.6786 1.4078 1.2959 46 1 5.7345 1.0971 -0.0947 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274045479.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:51 Heat of formation + Delta-G solvation = -93.878037 kcal Electronic energy + Delta-G solvation = -25072.985433 eV Core-core repulsion = 21575.709747 eV Total energy + Delta-G solvation = -3497.275686 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.12641 -40.10358 -37.83960 -37.39331 -35.67125 -34.78685 -33.15781 -30.72062 -29.43122 -28.25804 -27.77992 -27.17006 -25.52404 -24.25119 -22.43106 -21.30780 -20.81326 -20.39382 -18.50008 -17.84714 -17.47196 -17.45688 -17.07185 -16.50886 -16.32681 -15.96955 -15.77112 -15.61026 -15.17967 -14.90352 -14.52877 -14.38674 -14.27017 -14.02386 -13.72503 -13.35729 -13.24092 -13.17150 -13.08482 -12.77060 -12.55130 -12.48263 -12.35145 -12.16696 -12.08828 -11.86896 -11.41557 -11.36103 -11.32081 -11.11326 -10.83697 -10.52144 -10.35465 -9.69381 -9.23441 -8.18031 -6.28149 1.41926 1.42450 1.52371 1.53466 2.10376 2.42112 2.59639 3.09285 3.15674 3.36257 3.49235 3.65862 3.85542 4.05568 4.09812 4.18928 4.31950 4.36807 4.42332 4.47758 4.49736 4.57921 4.64547 4.71243 4.74003 4.76103 4.80476 4.81699 4.84228 4.88218 4.98762 5.07555 5.08771 5.14526 5.20046 5.30390 5.55991 5.56640 5.80199 5.90458 6.09334 6.12111 6.22326 6.30777 6.50932 6.89601 7.12446 7.41142 8.93621 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.023729 B = 0.003103 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.687031 B = 9021.816015 C = 9258.270865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.620 5.620 3 C 0.128 3.872 4 C -0.084 4.084 5 C -0.134 4.134 6 C 0.508 3.492 7 O -0.585 6.585 8 C 0.081 3.919 9 O -0.388 6.388 10 C 0.075 3.925 11 C 0.015 3.985 12 N -0.532 5.532 13 C 0.073 3.927 14 C -0.089 4.089 15 C 0.026 3.974 16 C -0.540 4.540 17 H 0.059 0.941 18 C 0.000 4.000 19 N -0.934 5.934 20 Si 0.961 3.039 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.263 1.263 24 C 0.069 3.931 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.030 0.970 40 H 0.052 0.948 41 H 0.051 0.949 42 H -0.009 1.009 43 H -0.009 1.009 44 H 0.263 0.737 45 H 0.081 0.919 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.963 -16.057 -10.700 20.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.353 5.353 3 C 0.006 3.994 4 C -0.086 4.086 5 C -0.175 4.175 6 C 0.297 3.703 7 O -0.467 6.467 8 C 0.004 3.996 9 O -0.306 6.306 10 C -0.002 4.002 11 C -0.114 4.114 12 N -0.255 5.255 13 C -0.055 4.055 14 C -0.127 4.127 15 C -0.012 4.012 16 C -0.578 4.578 17 H 0.077 0.923 18 C -0.198 4.198 19 N -0.574 5.574 20 Si 0.786 3.214 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.187 1.187 24 C -0.058 4.058 25 H 0.081 0.919 26 H 0.108 0.892 27 H 0.084 0.916 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.009 0.991 43 H 0.009 0.991 44 H 0.071 0.929 45 H 0.099 0.901 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.867 -16.351 -10.627 20.675 hybrid contribution 1.031 0.873 0.461 1.428 sum -5.836 -15.478 -10.166 19.416 Atomic orbital electron populations 1.21653 0.77494 1.03473 1.02473 1.48453 1.07356 1.07762 1.71720 1.22022 0.89152 0.86010 1.02187 1.20940 0.95342 0.93964 0.98328 1.22387 0.93102 0.95718 1.06268 1.21329 0.90600 0.83846 0.74484 1.90683 1.79713 1.22844 1.53428 1.22442 1.00278 0.85865 0.91037 1.87408 1.36255 1.19932 1.87046 1.23074 0.90613 0.90601 0.95911 1.22597 0.96268 1.02681 0.89842 1.61239 1.56111 1.06253 1.01926 1.22043 0.95840 0.92986 0.94599 1.21411 0.99890 0.92880 0.98469 1.18964 0.94338 0.93926 0.93954 1.21708 1.31305 0.93124 1.11641 0.92292 1.25940 0.94919 1.04019 0.94909 1.70084 1.35371 1.35204 1.16753 0.85510 0.77754 0.79264 0.78911 1.19938 1.20913 1.18689 1.20998 0.97070 0.86935 1.00805 0.91941 0.89248 0.91592 0.89129 0.91160 0.86185 0.86106 0.91323 0.89973 0.89668 0.91212 0.90374 0.92942 0.91115 0.95213 0.92960 0.93050 0.99056 0.99089 0.92866 0.90089 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.59 10.97 127.77 1.40 2.99 16 2 N -0.62 -12.90 3.33 -843.08 -2.81 -15.71 16 3 C 0.13 2.50 6.11 86.75 0.53 3.03 16 4 C -0.08 -1.39 0.63 -52.78 -0.03 -1.43 16 5 C -0.13 -2.11 5.78 30.57 0.18 -1.93 16 6 C 0.51 11.87 7.88 87.92 0.69 12.57 16 7 O -0.59 -18.39 17.59 -3.02 -0.05 -18.44 16 8 C 0.08 1.34 5.15 72.43 0.37 1.71 16 9 O -0.39 -7.96 8.72 -144.00 -1.26 -9.22 16 10 C 0.07 1.41 7.01 72.26 0.51 1.92 16 11 C 0.02 0.31 4.91 87.06 0.43 0.74 16 12 N -0.53 -12.28 4.20 -910.76 -3.83 -16.10 16 13 C 0.07 2.14 4.83 86.30 0.42 2.56 16 14 C -0.09 -3.35 5.13 30.59 0.16 -3.20 16 15 C 0.03 1.30 4.97 29.85 0.15 1.45 16 16 C -0.54 -29.96 9.11 25.60 0.23 -29.73 16 17 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 18 C 0.00 -0.02 5.46 84.66 0.46 0.45 16 19 N -0.93 -55.92 13.29 21.45 0.28 -55.64 16 20 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 24 C 0.07 1.23 3.75 84.12 0.32 1.54 16 25 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 26 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.07 1.24 7.92 -2.38 -0.02 1.22 16 28 H 0.09 1.99 6.65 -2.39 -0.02 1.97 16 29 H 0.07 1.43 7.96 -2.39 -0.02 1.41 16 30 H 0.12 1.51 7.85 -2.39 -0.02 1.49 16 31 H 0.12 1.59 7.94 -2.39 -0.02 1.57 16 32 H 0.07 0.93 7.17 -2.39 -0.02 0.91 16 33 H 0.08 1.37 7.84 -2.39 -0.02 1.36 16 34 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.85 5.79 -2.39 -0.01 1.83 16 37 H 0.05 0.92 6.72 -2.39 -0.02 0.90 16 38 H 0.07 2.11 7.80 -2.39 -0.02 2.09 16 39 H 0.03 0.88 8.11 -2.39 -0.02 0.86 16 40 H 0.05 1.91 6.36 -2.38 -0.02 1.90 16 41 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 42 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 43 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 44 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 45 H 0.08 1.42 7.61 -2.39 -0.02 1.40 16 46 H 0.06 0.91 7.40 -2.39 -0.02 0.89 16 Total: -1.00 -68.98 355.84 1.11 -67.87 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.95 Total: 9.05 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 5.81 Total: -7.34 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -6.36 Total: -87.45 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -1.31 Total: -27.67 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -68.98 1.11 -67.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274045479.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.010 kcal (2) G-P(sol) polarization free energy of solvation -68.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds