Wall clock time and date at job start Tue Mar 31 2020 03:48:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42899 * 113.99853 * 2 1
4 4 H 1.08999 * 109.47519 * 31.24442 * 3 2 1
5 5 C 1.50707 * 109.46900 * 151.23916 * 3 2 1
6 6 O 1.21284 * 119.99814 * 5.00605 * 5 3 2
7 7 N 1.34775 * 120.00005 * 184.99814 * 5 3 2
8 8 C 1.46927 * 120.63213 * 355.14277 * 7 5 3
9 9 C 1.53188 * 108.77351 * 126.36534 * 8 7 5
10 10 C 1.53043 * 109.33961 * 54.62272 * 9 8 7
11 11 C 1.53039 * 109.53627 * 298.68173 * 10 9 8
12 12 C 1.46922 * 120.62826 * 175.12136 * 7 5 3
13 13 H 1.08998 * 109.58687 * 113.84649 * 12 7 5
14 14 C 1.52998 * 109.59069 * 353.41914 * 12 7 5
15 15 N 1.46497 * 109.47334 * 182.58647 * 14 12 7
16 16 C 1.36938 * 120.00005 * 184.82644 * 15 14 12
17 17 H 1.07994 * 119.99956 * 0.02562 * 16 15 14
18 18 C 1.38817 * 119.99992 * 179.97438 * 16 15 14
19 19 N 1.31621 * 119.99857 * 0.02562 * 18 16 15
20 20 Si 1.86793 * 120.00132 * 180.02562 * 18 16 15
21 21 H 1.48508 * 109.47058 * 59.99893 * 20 18 16
22 22 H 1.48493 * 109.47569 * 180.02562 * 20 18 16
23 23 H 1.48503 * 109.47154 * 300.00712 * 20 18 16
24 24 C 1.52997 * 109.47380 * 271.23745 * 3 2 1
25 25 C 1.53005 * 117.49735 * 6.44857 * 24 3 2
26 26 C 1.53000 * 117.50232 * 297.79182 * 24 3 2
27 27 H 1.08999 * 109.46937 * 64.62785 * 1 2 3
28 28 H 1.09000 * 109.46917 * 184.62954 * 1 2 3
29 29 H 1.08998 * 109.46841 * 304.63008 * 1 2 3
30 30 H 1.08997 * 109.58137 * 6.58155 * 8 7 5
31 31 H 1.08996 * 109.58628 * 246.15767 * 8 7 5
32 32 H 1.09007 * 109.49675 * 174.58986 * 9 8 7
33 33 H 1.08996 * 109.50015 * 294.65219 * 9 8 7
34 34 H 1.09000 * 109.45814 * 58.66695 * 10 9 8
35 35 H 1.08994 * 109.46048 * 178.62676 * 10 9 8
36 36 H 1.08993 * 109.46926 * 301.36198 * 11 10 9
37 37 H 1.08998 * 109.51844 * 181.29929 * 11 10 9
38 38 H 1.08999 * 109.47191 * 302.58804 * 14 12 7
39 39 H 1.09000 * 109.47085 * 62.58438 * 14 12 7
40 40 H 0.97003 * 119.99912 * 4.84000 * 15 14 12
41 41 H 0.96994 * 120.00161 * 179.97438 * 19 18 16
42 42 H 1.09000 * 115.55197 * 152.11164 * 24 3 2
43 43 H 1.08997 * 117.49822 * 359.97438 * 25 24 3
44 44 H 1.09008 * 117.49630 * 145.01447 * 25 24 3
45 45 H 1.09004 * 117.49476 * 214.97955 * 26 24 3
46 46 H 1.09001 * 117.49872 * 359.97438 * 26 24 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 1 1.3554 1.9948 0.5330
5 6 3.3524 1.2577 0.6837
6 8 3.8108 0.1950 1.0462
7 7 4.0434 2.3960 0.8920
8 6 3.5525 3.6768 0.3654
9 6 3.4765 4.6860 1.5153
10 6 4.8397 4.7714 2.2057
11 6 5.2060 3.4035 2.7861
12 6 5.3016 2.3796 1.6506
13 1 6.1291 2.6414 0.9913
14 6 5.5297 0.9845 2.2358
15 7 6.7526 0.9872 3.0424
16 6 7.2154 -0.1803 3.5882
17 1 6.6792 -1.1031 3.4236
18 6 8.3745 -0.1778 4.3521
19 7 9.0283 0.9469 4.5522
20 14 9.0063 -1.7705 5.0959
21 1 9.2934 -2.7436 4.0115
22 1 10.2498 -1.5004 5.8613
23 1 7.9775 -2.3338 6.0067
24 6 2.1892 1.7841 -1.4421
25 6 1.6066 0.9095 -2.5542
26 6 3.1216 0.9738 -2.3449
27 1 -0.3633 0.4404 -0.9285
28 1 -0.3633 -1.0243 0.0829
29 1 -0.3633 0.5840 0.8456
30 1 2.5610 3.5386 -0.0657
31 1 4.2375 4.0442 -0.3987
32 1 3.2059 5.6660 1.1220
33 1 2.7242 4.3622 2.2344
34 1 5.5959 5.0718 1.4804
35 1 4.7946 5.5069 3.0088
36 1 4.4378 3.0915 3.4935
37 1 6.1662 3.4702 3.2976
38 1 4.6814 0.7104 2.8629
39 1 5.6306 0.2626 1.4253
40 1 7.2343 1.8161 3.1901
41 1 9.8380 0.9488 5.0863
42 1 2.1631 2.8643 -1.5856
43 1 1.0962 -0.0071 -2.2584
44 1 1.1976 1.4143 -3.4294
45 1 3.7087 1.5210 -3.0825
46 1 3.6078 0.0999 -1.9113
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001274990822.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:48:13
Heat of formation + Delta-G solvation = -18.502797 kcal
Electronic energy + Delta-G solvation = -25687.772970 eV
Core-core repulsion = 22193.765800 eV
Total energy + Delta-G solvation = -3494.007170 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 296.189 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-40.71492 -38.73782 -36.96721 -35.97431 -34.64969 -32.75139 -31.99224 -29.75967
-28.99130 -26.47168 -25.86076 -24.40185 -23.11494 -22.50455 -21.62710 -21.05466
-20.39819 -18.92337 -17.23989 -17.04211 -16.70227 -16.45005 -15.50554 -14.95491
-14.84037 -14.61836 -14.37522 -14.14431 -13.97324 -13.48520 -13.38274 -13.06067
-12.87266 -12.70596 -12.58764 -12.07930 -11.98240 -11.54733 -11.47641 -11.43940
-10.98735 -10.93112 -10.80099 -10.66017 -10.63605 -10.57692 -10.39317 -10.23237
-9.93944 -9.87536 -9.56959 -8.79519 -8.54759 -8.28455 -6.71094 -5.61456
-2.87405 2.80836 2.83946 3.50928 3.55902 3.58483 3.61354 3.82775
4.38334 4.56959 4.64014 4.70169 4.76201 4.85539 4.96039 4.98850
5.04225 5.09230 5.19662 5.21991 5.28134 5.41165 5.43821 5.48038
5.53096 5.63111 5.70168 5.73178 5.82865 5.85392 5.93491 6.01262
6.03825 6.09128 6.26096 6.30855 6.32701 6.59573 6.76409 6.95184
7.17440 7.35579 7.63386 7.89689 8.46806 8.61246 9.69336 10.28609
10.63853 11.62262
Molecular weight = 296.19amu
Principal moments of inertia in cm(-1)
A = 0.016328 B = 0.004484 C = 0.003825
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1714.406825 B = 6243.328492 C = 7318.894629
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.353 6.353
3 C 0.102 3.898
4 H 0.085 0.915
5 C 0.514 3.486
6 O -0.494 6.494
7 N -0.602 5.602
8 C 0.104 3.896
9 C -0.136 4.136
10 C -0.120 4.120
11 C -0.127 4.127
12 C 0.142 3.858
13 H 0.071 0.929
14 C 0.161 3.839
15 N -0.738 5.738
16 C -0.224 4.224
17 H 0.070 0.930
18 C -0.019 4.019
19 N -0.940 5.940
20 Si 0.906 3.094
21 H -0.287 1.287
22 H -0.292 1.292
23 H -0.287 1.287
24 C -0.191 4.191
25 C -0.168 4.168
26 C -0.162 4.162
27 H 0.046 0.954
28 H 0.089 0.911
29 H 0.042 0.958
30 H 0.083 0.917
31 H 0.069 0.931
32 H 0.071 0.929
33 H 0.065 0.935
34 H 0.063 0.937
35 H 0.063 0.937
36 H 0.064 0.936
37 H 0.086 0.914
38 H 0.024 0.976
39 H 0.054 0.946
40 H 0.378 0.622
41 H 0.253 0.747
42 H 0.118 0.882
43 H 0.104 0.896
44 H 0.093 0.907
45 H 0.094 0.906
46 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.938 9.653 -13.701 25.289
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.270 6.270
3 C 0.040 3.960
4 H 0.103 0.897
5 C 0.300 3.700
6 O -0.367 6.367
7 N -0.339 5.339
8 C -0.019 4.019
9 C -0.174 4.174
10 C -0.158 4.158
11 C -0.166 4.166
12 C 0.040 3.960
13 H 0.089 0.911
14 C 0.035 3.965
15 N -0.384 5.384
16 C -0.355 4.355
17 H 0.088 0.912
18 C -0.214 4.214
19 N -0.590 5.590
20 Si 0.738 3.262
21 H -0.214 1.214
22 H -0.218 1.218
23 H -0.214 1.214
24 C -0.209 4.209
25 C -0.205 4.205
26 C -0.199 4.199
27 H 0.064 0.936
28 H 0.107 0.893
29 H 0.061 0.939
30 H 0.101 0.899
31 H 0.087 0.913
32 H 0.089 0.911
33 H 0.084 0.916
34 H 0.081 0.919
35 H 0.082 0.918
36 H 0.083 0.917
37 H 0.105 0.895
38 H 0.042 0.958
39 H 0.072 0.928
40 H 0.212 0.788
41 H 0.063 0.937
42 H 0.136 0.864
43 H 0.122 0.878
44 H 0.111 0.889
45 H 0.113 0.887
46 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges -18.577 8.689 -13.463 24.533
hybrid contribution 0.293 -0.092 0.503 0.589
sum -18.284 8.596 -12.960 24.004
Atomic orbital electron populations
1.22934 0.80934 1.03116 1.00109 1.88056 1.19390 1.25003 1.94556
1.21461 0.94175 0.86342 0.94024 0.89728 1.20137 0.85880 0.84259
0.79724 1.90854 1.67552 1.29459 1.48814 1.48018 1.24223 1.06635
1.54986 1.21891 0.99931 0.83947 0.96162 1.21949 0.98706 0.98709
0.98048 1.21541 0.96289 0.97905 1.00031 1.21945 1.03428 0.93487
0.97709 1.21582 0.83714 0.98570 0.92134 0.91094 1.21262 0.89483
0.91286 0.94505 1.42584 1.26601 1.08596 1.60594 1.19217 1.05033
0.87854 1.23439 0.91242 1.24686 0.98257 0.96905 1.01564 1.69646
1.19614 1.24782 1.44987 0.86263 0.77886 0.83167 0.78919 1.21375
1.21836 1.21419 1.22923 1.08516 0.98236 0.91236 1.23004 0.97011
1.01949 0.98552 1.22937 0.92783 1.02570 1.01651 0.93595 0.89258
0.93925 0.89889 0.91253 0.91074 0.91628 0.91861 0.91814 0.91717
0.89526 0.95808 0.92791 0.78770 0.93740 0.86441 0.87793 0.88884
0.88723 0.87999
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.23 10.14 101.05 1.02 1.25 16
2 O -0.35 -4.78 8.75 -55.09 -0.48 -5.26 16
3 C 0.10 1.23 2.13 -27.88 -0.06 1.17 16
4 H 0.09 0.83 7.25 -51.93 -0.38 0.45 16
5 C 0.51 8.39 6.54 -10.98 -0.07 8.32 16
6 O -0.49 -10.58 12.04 -14.31 -0.17 -10.76 16
7 N -0.60 -8.79 2.97 -165.23 -0.49 -9.28 16
8 C 0.10 1.03 5.64 -3.71 -0.02 1.01 16
9 C -0.14 -1.29 6.08 -26.61 -0.16 -1.45 16
10 C -0.12 -1.41 5.89 -26.69 -0.16 -1.57 16
11 C -0.13 -2.06 5.08 -26.61 -0.14 -2.19 16
12 C 0.14 2.54 3.11 -67.60 -0.21 2.33 16
13 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16
14 C 0.16 3.77 4.14 -4.04 -0.02 3.75 16
15 N -0.74 -20.13 5.37 -59.91 -0.32 -20.45 16
16 C -0.22 -6.77 9.99 -15.06 -0.15 -6.93 16
17 H 0.07 2.10 7.83 -52.49 -0.41 1.69 16
18 C -0.02 -0.59 5.50 -17.43 -0.10 -0.68 16
19 N -0.94 -29.47 13.06 55.49 0.72 -28.74 16
20 Si 0.91 23.76 29.55 -169.99 -5.02 18.73 16
21 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16
22 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16
23 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16
24 C -0.19 -1.83 4.70 -90.62 -0.43 -2.25 16
25 C -0.17 -1.50 9.12 -26.69 -0.24 -1.74 16
26 C -0.16 -1.77 9.79 -26.70 -0.26 -2.03 16
27 H 0.05 0.33 6.77 -51.93 -0.35 -0.03 16
28 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16
29 H 0.04 0.34 7.98 -51.93 -0.41 -0.07 16
30 H 0.08 0.64 4.14 -51.93 -0.21 0.42 16
31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16
33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16
36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
37 H 0.09 1.59 6.85 -51.93 -0.36 1.23 16
38 H 0.02 0.61 7.17 -51.93 -0.37 0.24 16
39 H 0.05 1.39 6.32 -51.93 -0.33 1.07 16
40 H 0.38 10.44 6.31 -40.82 -0.26 10.18 16
41 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16
42 H 0.12 0.85 6.41 -51.93 -0.33 0.52 16
43 H 0.10 1.00 5.91 -51.93 -0.31 0.70 16
44 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16
45 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16
46 H 0.10 1.42 8.10 -51.93 -0.42 1.00 16
LS Contribution 351.69 15.07 5.30 5.30
Total: -1.00 -35.42 351.69 -8.96 -44.38
By element:
Atomic # 1 Polarization: 14.59 SS G_CDS: -7.50 Total: 7.08 kcal
Atomic # 6 Polarization: -0.02 SS G_CDS: -0.99 Total: -1.00 kcal
Atomic # 7 Polarization: -58.38 SS G_CDS: -0.09 Total: -58.47 kcal
Atomic # 8 Polarization: -15.37 SS G_CDS: -0.65 Total: -16.02 kcal
Atomic # 14 Polarization: 23.76 SS G_CDS: -5.02 Total: 18.73 kcal
Total LS contribution 5.30 Total: 5.30 kcal
Total: -35.42 -8.96 -44.38 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001274990822.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.876 kcal
(2) G-P(sol) polarization free energy of solvation -35.422 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.546 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.379 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.503 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds