Wall clock time and date at job start Tue Mar 31 2020 03:48:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42899 * 113.99853 * 2 1
4 4 H 1.08999 * 109.47519 * 31.24442 * 3 2 1
5 5 C 1.50707 * 109.46900 * 151.23916 * 3 2 1
6 6 O 1.21284 * 119.99814 * 5.00605 * 5 3 2
7 7 N 1.34775 * 120.00005 * 184.99814 * 5 3 2
8 8 C 1.46927 * 120.63213 * 355.14277 * 7 5 3
9 9 C 1.53188 * 108.77351 * 126.36534 * 8 7 5
10 10 C 1.53043 * 109.33961 * 54.62272 * 9 8 7
11 11 C 1.53039 * 109.53627 * 298.68173 * 10 9 8
12 12 C 1.46922 * 120.62826 * 175.12136 * 7 5 3
13 13 H 1.08998 * 109.58687 * 113.84649 * 12 7 5
14 14 C 1.52998 * 109.59069 * 353.41914 * 12 7 5
15 15 N 1.46497 * 109.47334 * 182.58647 * 14 12 7
16 16 C 1.36938 * 120.00005 * 184.82644 * 15 14 12
17 17 H 1.07994 * 119.99956 * 0.02562 * 16 15 14
18 18 C 1.38817 * 119.99992 * 179.97438 * 16 15 14
19 19 N 1.31621 * 119.99857 * 0.02562 * 18 16 15
20 20 Si 1.86793 * 120.00132 * 180.02562 * 18 16 15
21 21 H 1.48508 * 109.47058 * 59.99893 * 20 18 16
22 22 H 1.48493 * 109.47569 * 180.02562 * 20 18 16
23 23 H 1.48503 * 109.47154 * 300.00712 * 20 18 16
24 24 C 1.52997 * 109.47380 * 271.23745 * 3 2 1
25 25 C 1.53005 * 117.49735 * 6.44857 * 24 3 2
26 26 C 1.53000 * 117.50232 * 297.79182 * 24 3 2
27 27 H 1.08999 * 109.46937 * 64.62785 * 1 2 3
28 28 H 1.09000 * 109.46917 * 184.62954 * 1 2 3
29 29 H 1.08998 * 109.46841 * 304.63008 * 1 2 3
30 30 H 1.08997 * 109.58137 * 6.58155 * 8 7 5
31 31 H 1.08996 * 109.58628 * 246.15767 * 8 7 5
32 32 H 1.09007 * 109.49675 * 174.58986 * 9 8 7
33 33 H 1.08996 * 109.50015 * 294.65219 * 9 8 7
34 34 H 1.09000 * 109.45814 * 58.66695 * 10 9 8
35 35 H 1.08994 * 109.46048 * 178.62676 * 10 9 8
36 36 H 1.08993 * 109.46926 * 301.36198 * 11 10 9
37 37 H 1.08998 * 109.51844 * 181.29929 * 11 10 9
38 38 H 1.08999 * 109.47191 * 302.58804 * 14 12 7
39 39 H 1.09000 * 109.47085 * 62.58438 * 14 12 7
40 40 H 0.97003 * 119.99912 * 4.84000 * 15 14 12
41 41 H 0.96994 * 120.00161 * 179.97438 * 19 18 16
42 42 H 1.09000 * 115.55197 * 152.11164 * 24 3 2
43 43 H 1.08997 * 117.49822 * 359.97438 * 25 24 3
44 44 H 1.09008 * 117.49630 * 145.01447 * 25 24 3
45 45 H 1.09004 * 117.49476 * 214.97955 * 26 24 3
46 46 H 1.09001 * 117.49872 * 359.97438 * 26 24 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 1 1.3554 1.9948 0.5330
5 6 3.3524 1.2577 0.6837
6 8 3.8108 0.1950 1.0462
7 7 4.0434 2.3960 0.8920
8 6 3.5525 3.6768 0.3654
9 6 3.4765 4.6860 1.5153
10 6 4.8397 4.7714 2.2057
11 6 5.2060 3.4035 2.7861
12 6 5.3016 2.3796 1.6506
13 1 6.1291 2.6414 0.9913
14 6 5.5297 0.9845 2.2358
15 7 6.7526 0.9872 3.0424
16 6 7.2154 -0.1803 3.5882
17 1 6.6792 -1.1031 3.4236
18 6 8.3745 -0.1778 4.3521
19 7 9.0283 0.9469 4.5522
20 14 9.0063 -1.7705 5.0959
21 1 9.2934 -2.7436 4.0115
22 1 10.2498 -1.5004 5.8613
23 1 7.9775 -2.3338 6.0067
24 6 2.1892 1.7841 -1.4421
25 6 1.6066 0.9095 -2.5542
26 6 3.1216 0.9738 -2.3449
27 1 -0.3633 0.4404 -0.9285
28 1 -0.3633 -1.0243 0.0829
29 1 -0.3633 0.5840 0.8456
30 1 2.5610 3.5386 -0.0657
31 1 4.2375 4.0442 -0.3987
32 1 3.2059 5.6660 1.1220
33 1 2.7242 4.3622 2.2344
34 1 5.5959 5.0718 1.4804
35 1 4.7946 5.5069 3.0088
36 1 4.4378 3.0915 3.4935
37 1 6.1662 3.4702 3.2976
38 1 4.6814 0.7104 2.8629
39 1 5.6306 0.2626 1.4253
40 1 7.2343 1.8161 3.1901
41 1 9.8380 0.9488 5.0863
42 1 2.1631 2.8643 -1.5856
43 1 1.0962 -0.0071 -2.2584
44 1 1.1976 1.4143 -3.4294
45 1 3.7087 1.5210 -3.0825
46 1 3.6078 0.0999 -1.9113
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001274990822.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:48:12
Heat of formation + Delta-G solvation = -42.749442 kcal
Electronic energy + Delta-G solvation = -25688.824383 eV
Core-core repulsion = 22193.765800 eV
Total energy + Delta-G solvation = -3495.058584 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 296.189 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-41.88199 -39.74348 -38.19964 -36.87021 -36.53500 -34.04448 -33.72444 -31.55701
-29.93511 -27.76798 -27.02744 -25.68995 -24.94675 -23.32943 -22.61553 -22.57024
-21.35150 -20.17588 -19.16322 -18.11263 -17.88766 -17.53142 -16.72430 -16.58805
-16.02017 -15.77561 -15.54555 -15.43764 -15.23717 -14.85400 -14.63986 -14.51305
-14.34324 -13.93475 -13.68347 -13.56359 -13.07042 -12.95563 -12.83570 -12.60057
-12.34471 -12.25869 -12.23845 -12.06288 -12.03164 -11.83014 -11.62569 -11.49555
-11.31133 -11.18869 -11.00147 -10.71962 -9.98369 -9.58793 -8.98745 -7.98262
-5.26557 1.41889 1.46404 1.52904 1.60744 1.72002 2.53686 2.72218
2.93719 3.33885 3.52918 3.63420 3.81340 3.84252 3.90623 3.95089
4.08723 4.11390 4.21394 4.23506 4.29023 4.32065 4.43349 4.51708
4.57833 4.62249 4.69220 4.80276 4.82349 4.86191 4.95841 4.99428
5.05827 5.12432 5.17061 5.19933 5.26317 5.30047 5.30693 5.43584
5.48348 5.65627 6.09222 6.24984 6.49052 7.24671 7.30771 8.04469
8.33515 9.25074
Molecular weight = 296.19amu
Principal moments of inertia in cm(-1)
A = 0.016328 B = 0.004484 C = 0.003825
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1714.406825 B = 6243.328492 C = 7318.894629
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.020 3.980
2 O -0.392 6.392
3 C 0.107 3.893
4 H 0.117 0.883
5 C 0.502 3.498
6 O -0.563 6.563
7 N -0.597 5.597
8 C 0.095 3.905
9 C -0.129 4.129
10 C -0.114 4.114
11 C -0.120 4.120
12 C 0.152 3.848
13 H 0.069 0.931
14 C 0.176 3.824
15 N -0.744 5.744
16 C -0.248 4.248
17 H 0.058 0.942
18 C -0.069 4.069
19 N -0.966 5.966
20 Si 0.975 3.025
21 H -0.281 1.281
22 H -0.284 1.284
23 H -0.280 1.280
24 C -0.181 4.181
25 C -0.149 4.149
26 C -0.187 4.187
27 H 0.070 0.930
28 H 0.091 0.909
29 H 0.053 0.947
30 H 0.116 0.884
31 H 0.088 0.912
32 H 0.112 0.888
33 H 0.062 0.938
34 H 0.072 0.928
35 H 0.076 0.924
36 H 0.048 0.952
37 H 0.056 0.944
38 H -0.002 1.002
39 H 0.025 0.975
40 H 0.375 0.625
41 H 0.254 0.746
42 H 0.156 0.844
43 H 0.093 0.907
44 H 0.124 0.876
45 H 0.110 0.890
46 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.068 12.099 -15.217 28.667
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 O -0.311 6.311
3 C 0.046 3.954
4 H 0.135 0.865
5 C 0.290 3.710
6 O -0.440 6.440
7 N -0.332 5.332
8 C -0.026 4.026
9 C -0.167 4.167
10 C -0.152 4.152
11 C -0.158 4.158
12 C 0.048 3.952
13 H 0.087 0.913
14 C 0.050 3.950
15 N -0.390 5.390
16 C -0.380 4.380
17 H 0.076 0.924
18 C -0.261 4.261
19 N -0.616 5.616
20 Si 0.803 3.197
21 H -0.207 1.207
22 H -0.210 1.210
23 H -0.207 1.207
24 C -0.199 4.199
25 C -0.185 4.185
26 C -0.224 4.224
27 H 0.088 0.912
28 H 0.110 0.890
29 H 0.072 0.928
30 H 0.134 0.866
31 H 0.106 0.894
32 H 0.131 0.869
33 H 0.081 0.919
34 H 0.091 0.909
35 H 0.095 0.905
36 H 0.066 0.934
37 H 0.075 0.925
38 H 0.015 0.985
39 H 0.042 0.958
40 H 0.208 0.792
41 H 0.063 0.937
42 H 0.174 0.826
43 H 0.111 0.889
44 H 0.143 0.857
45 H 0.128 0.872
46 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -20.753 11.183 -15.009 27.947
hybrid contribution 0.933 -0.895 0.970 1.616
sum -19.820 10.288 -14.039 26.378
Atomic orbital electron populations
1.23145 0.78650 1.03928 1.01829 1.88023 1.21964 1.26214 1.94857
1.21498 0.91645 0.86717 0.95554 0.86530 1.21142 0.87401 0.83539
0.78897 1.90820 1.69463 1.31950 1.51774 1.48108 1.22661 1.08471
1.53967 1.22354 1.01931 0.81415 0.96858 1.21958 0.96711 1.00538
0.97513 1.21530 0.98302 0.94605 1.00762 1.21825 1.01364 0.96034
0.96625 1.21201 0.85766 0.95291 0.92957 0.91348 1.21048 0.86862
0.94568 0.92551 1.42720 1.27624 1.07688 1.60949 1.19461 1.05704
0.88496 1.24378 0.92380 1.25517 0.98230 1.00528 1.01870 1.69789
1.19805 1.26689 1.45342 0.85209 0.77375 0.79054 0.78105 1.20692
1.20964 1.20659 1.23044 1.07468 0.99999 0.89356 1.23074 0.94883
1.01533 0.99040 1.22847 0.94372 1.02027 1.03144 0.91164 0.89035
0.92813 0.86609 0.89420 0.86943 0.91888 0.90947 0.90525 0.93351
0.92543 0.98460 0.95750 0.79202 0.93716 0.82650 0.88862 0.85750
0.87170 0.92521
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.33 10.14 113.37 1.15 1.48 16
2 O -0.39 -10.58 8.75 -129.99 -1.14 -11.72 16
3 C 0.11 2.42 2.13 29.85 0.06 2.49 16
4 H 0.12 1.86 7.25 -2.39 -0.02 1.84 16
5 C 0.50 16.79 6.54 87.66 0.57 17.37 16
6 O -0.56 -26.14 12.04 15.95 0.19 -25.95 16
7 N -0.60 -17.19 2.97 -795.04 -2.36 -19.55 16
8 C 0.10 1.52 5.64 86.36 0.49 2.01 16
9 C -0.13 -1.89 6.08 30.67 0.19 -1.71 16
10 C -0.11 -2.43 5.89 30.62 0.18 -2.25 16
11 C -0.12 -3.97 5.08 30.67 0.16 -3.82 16
12 C 0.15 5.64 3.11 44.98 0.14 5.78 16
13 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16
14 C 0.18 8.89 4.14 86.38 0.36 9.25 16
15 N -0.74 -43.23 5.37 -343.46 -1.85 -45.08 16
16 C -0.25 -15.78 9.99 84.03 0.84 -14.94 16
17 H 0.06 3.73 7.83 -2.91 -0.02 3.71 16
18 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16
19 N -0.97 -61.87 13.06 21.65 0.28 -61.59 16
20 Si 0.97 49.85 29.55 68.60 2.03 51.87 16
21 H -0.28 -14.01 7.11 99.48 0.71 -13.31 16
22 H -0.28 -14.08 7.11 99.48 0.71 -13.38 16
23 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16
24 C -0.18 -2.89 4.70 -10.79 -0.05 -2.94 16
25 C -0.15 -2.22 9.12 30.62 0.28 -1.94 16
26 C -0.19 -3.91 9.79 30.62 0.30 -3.61 16
27 H 0.07 0.78 6.77 -2.39 -0.02 0.76 16
28 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16
29 H 0.05 0.74 7.98 -2.39 -0.02 0.72 16
30 H 0.12 1.13 4.14 -2.39 -0.01 1.12 16
31 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16
32 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16
33 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16
34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16
35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16
36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16
37 H 0.06 2.19 6.85 -2.39 -0.02 2.17 16
38 H 0.00 -0.14 7.17 -2.39 -0.02 -0.15 16
39 H 0.02 1.39 6.32 -2.39 -0.02 1.38 16
40 H 0.37 21.90 6.31 -92.71 -0.59 21.32 16
41 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16
42 H 0.16 1.32 6.41 -2.39 -0.02 1.30 16
43 H 0.09 1.63 5.91 -2.39 -0.01 1.62 16
44 H 0.12 1.13 8.14 -2.38 -0.02 1.12 16
45 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16
46 H 0.06 1.71 8.10 -2.39 -0.02 1.69 16
Total: -1.00 -84.50 351.69 2.67 -81.83
By element:
Atomic # 1 Polarization: 26.46 SS G_CDS: 0.39 Total: 26.85 kcal
Atomic # 6 Polarization: -1.80 SS G_CDS: 5.13 Total: 3.33 kcal
Atomic # 7 Polarization: -122.29 SS G_CDS: -3.93 Total: -126.22 kcal
Atomic # 8 Polarization: -36.72 SS G_CDS: -0.95 Total: -37.67 kcal
Atomic # 14 Polarization: 49.85 SS G_CDS: 2.03 Total: 51.87 kcal
Total: -84.50 2.67 -81.83 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001274990822.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.082 kcal
(2) G-P(sol) polarization free energy of solvation -84.504 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.422 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.832 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.749 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds