Wall clock time and date at job start Tue Mar 31 2020 03:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99484 * 2 1 4 4 H 1.08993 * 109.47930 * 30.00032 * 3 2 1 5 5 C 1.50703 * 109.47398 * 269.99580 * 3 2 1 6 6 O 1.21279 * 119.99610 * 354.73278 * 5 3 2 7 7 N 1.34773 * 120.00386 * 175.00193 * 5 3 2 8 8 C 1.46924 * 120.63139 * 353.90207 * 7 5 3 9 9 C 1.53191 * 108.77483 * 126.36497 * 8 7 5 10 10 C 1.53043 * 109.31247 * 54.63777 * 9 8 7 11 11 C 1.53036 * 109.53980 * 298.63344 * 10 9 8 12 12 C 1.46931 * 120.62997 * 173.62329 * 7 5 3 13 13 H 1.08996 * 109.58568 * 113.84654 * 12 7 5 14 14 C 1.52997 * 109.58625 * 353.41896 * 12 7 5 15 15 N 1.46496 * 109.46956 * 181.03150 * 14 12 7 16 16 C 1.36936 * 120.00041 * 184.96834 * 15 14 12 17 17 H 1.07998 * 119.99961 * 359.97438 * 16 15 14 18 18 C 1.38816 * 119.99880 * 180.02562 * 16 15 14 19 19 N 1.31613 * 120.00541 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99809 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47360 * 89.99704 * 20 18 16 22 22 H 1.48498 * 109.47039 * 209.99747 * 20 18 16 23 23 H 1.48497 * 109.47352 * 329.99754 * 20 18 16 24 24 C 1.53007 * 109.47077 * 150.00354 * 3 2 1 25 25 C 1.53002 * 117.49674 * 8.61766 * 24 3 2 26 26 C 1.53002 * 60.00082 * 252.51452 * 25 24 3 27 27 H 1.08993 * 109.47410 * 299.99962 * 1 2 3 28 28 H 1.08999 * 109.47112 * 60.00059 * 1 2 3 29 29 H 1.09000 * 109.47128 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.58869 * 246.15861 * 8 7 5 31 31 H 1.09001 * 109.58623 * 6.43866 * 8 7 5 32 32 H 1.09006 * 109.49507 * 174.58779 * 9 8 7 33 33 H 1.08997 * 109.50291 * 294.65503 * 9 8 7 34 34 H 1.09006 * 109.45448 * 58.65466 * 10 9 8 35 35 H 1.08999 * 109.46208 * 178.62319 * 10 9 8 36 36 H 1.08992 * 109.49768 * 181.31083 * 11 10 9 37 37 H 1.08998 * 109.49594 * 301.41946 * 11 10 9 38 38 H 1.08997 * 109.47008 * 301.02780 * 14 12 7 39 39 H 1.08994 * 109.47052 * 61.03440 * 14 12 7 40 40 H 0.97000 * 120.00338 * 4.97027 * 15 14 12 41 41 H 0.96992 * 120.00798 * 180.02562 * 19 18 16 42 42 H 1.09002 * 115.55235 * 154.32819 * 24 3 2 43 43 H 1.08998 * 117.49869 * 0.02562 * 25 24 3 44 44 H 1.08996 * 117.49761 * 145.02603 * 25 24 3 45 45 H 1.08997 * 117.49916 * 252.50933 * 26 25 24 46 46 H 1.09005 * 117.50329 * 107.48678 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 1.9839 1.0090 -2.3411 7 7 2.6588 3.0125 -1.6686 8 6 2.8212 3.9801 -0.5750 9 6 4.2488 4.5344 -0.6151 10 6 4.5312 5.1053 -2.0067 11 6 4.4160 3.9916 -3.0499 12 6 2.9956 3.4293 -3.0367 13 1 2.2979 4.1990 -3.3664 14 6 2.9146 2.2235 -3.9749 15 7 3.2748 2.6368 -5.3334 16 6 3.1756 1.7463 -6.3689 17 1 2.8323 0.7392 -6.1841 18 6 3.5175 2.1378 -7.6561 19 7 3.9364 3.3650 -7.8814 20 14 3.3828 0.9228 -9.0686 21 1 2.0273 1.0098 -9.6690 22 1 4.4022 1.2465 -10.0988 23 1 3.6119 -0.4538 -8.5610 24 6 3.3589 1.2634 0.7212 25 6 3.9139 -0.1107 1.1017 26 6 3.3635 0.8187 2.1852 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 2.1089 4.7956 -0.6999 31 1 2.6459 3.4850 0.3801 32 1 4.3538 5.3231 0.1299 33 1 4.9562 3.7337 -0.3995 34 1 3.8079 5.8894 -2.2311 35 1 5.5379 5.5224 -2.0307 36 1 4.6401 4.3939 -4.0378 37 1 5.1218 3.1958 -2.8119 38 1 3.6050 1.4516 -3.6349 39 1 1.8986 1.8290 -3.9725 40 1 3.5836 3.5412 -5.4995 41 1 4.1749 3.6387 -8.7809 42 1 4.0740 2.0313 0.4262 43 1 3.3184 -0.9847 0.8378 44 1 4.9944 -0.2471 1.0569 45 1 4.0819 1.2938 2.8532 46 1 2.4057 0.5564 2.6345 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274990823.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:15 Heat of formation + Delta-G solvation = -46.677693 kcal Electronic energy + Delta-G solvation = -25718.599707 eV Core-core repulsion = 22223.370781 eV Total energy + Delta-G solvation = -3495.228925 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.89011 -39.58474 -38.23003 -37.01539 -36.58396 -34.07543 -33.73409 -31.56756 -29.84076 -27.80861 -27.11582 -25.60434 -24.94980 -23.19321 -22.66781 -22.26299 -21.80459 -20.09492 -19.20325 -18.26772 -17.86050 -17.11287 -16.86943 -16.59671 -16.09828 -15.72355 -15.61805 -15.51862 -15.08063 -14.84873 -14.72668 -14.59028 -14.29862 -14.10624 -13.82575 -13.56971 -13.08623 -12.88221 -12.67344 -12.51065 -12.37090 -12.25502 -12.22036 -12.14156 -12.02212 -11.82319 -11.63431 -11.46260 -11.31895 -11.23889 -11.05138 -10.99554 -9.85485 -9.60707 -8.99041 -7.99261 -5.27543 1.41474 1.44388 1.51702 1.53869 1.86935 2.52661 2.66092 2.95259 3.33084 3.41003 3.69326 3.82267 3.83744 3.92728 3.95899 4.09356 4.11306 4.15243 4.22618 4.27551 4.37686 4.43150 4.49714 4.54683 4.60059 4.68332 4.80735 4.82263 4.87472 4.94678 4.99082 5.06451 5.11293 5.18506 5.21816 5.27619 5.30742 5.37713 5.42873 5.48606 5.65671 6.00891 6.23966 6.46561 7.21996 7.29840 8.03596 8.32313 9.24305 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.016424 B = 0.004542 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.425402 B = 6163.378355 C = 7232.953918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.378 6.378 3 C 0.113 3.887 4 H 0.119 0.881 5 C 0.477 3.523 6 O -0.563 6.563 7 N -0.600 5.600 8 C 0.095 3.905 9 C -0.128 4.128 10 C -0.114 4.114 11 C -0.120 4.120 12 C 0.149 3.851 13 H 0.068 0.932 14 C 0.174 3.826 15 N -0.744 5.744 16 C -0.247 4.247 17 H 0.058 0.942 18 C -0.069 4.069 19 N -0.966 5.966 20 Si 0.974 3.026 21 H -0.283 1.283 22 H -0.285 1.285 23 H -0.277 1.277 24 C -0.175 4.175 25 C -0.181 4.181 26 C -0.133 4.133 27 H 0.074 0.926 28 H 0.024 0.976 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.047 0.953 38 H -0.006 1.006 39 H 0.031 0.969 40 H 0.374 0.626 41 H 0.254 0.746 42 H 0.128 0.872 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.122 0.878 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.454 3.199 27.483 27.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.295 6.295 3 C 0.052 3.948 4 H 0.136 0.864 5 C 0.266 3.734 6 O -0.441 6.441 7 N -0.336 5.336 8 C -0.026 4.026 9 C -0.166 4.166 10 C -0.152 4.152 11 C -0.158 4.158 12 C 0.045 3.955 13 H 0.086 0.914 14 C 0.048 3.952 15 N -0.390 5.390 16 C -0.379 4.379 17 H 0.077 0.923 18 C -0.262 4.262 19 N -0.617 5.617 20 Si 0.803 3.197 21 H -0.210 1.210 22 H -0.211 1.211 23 H -0.202 1.202 24 C -0.193 4.193 25 C -0.218 4.218 26 C -0.169 4.169 27 H 0.092 0.908 28 H 0.043 0.957 29 H 0.116 0.884 30 H 0.105 0.895 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.012 0.988 39 H 0.048 0.952 40 H 0.207 0.793 41 H 0.063 0.937 42 H 0.145 0.855 43 H 0.105 0.895 44 H 0.115 0.885 45 H 0.140 0.860 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.528 2.442 26.967 27.195 hybrid contribution -0.095 -0.329 -1.842 1.874 sum -2.623 2.113 25.125 25.349 Atomic orbital electron populations 1.22997 0.79547 1.04061 1.00457 1.87960 1.21351 1.25973 1.94235 1.21557 0.96795 0.86628 0.89865 0.86388 1.22146 0.76717 0.81481 0.93093 1.90802 1.51443 1.55376 1.46437 1.48302 1.64829 1.12360 1.08070 1.22257 0.98546 0.92331 0.89487 1.21941 0.95624 1.01718 0.97270 1.21527 1.02936 0.96531 0.94156 1.21749 0.94730 0.99013 1.00351 1.21122 0.96977 0.95832 0.81526 0.91416 1.21092 0.97331 0.93340 0.83449 1.42717 1.80065 1.12917 1.03281 1.19491 1.36241 0.93819 0.88351 0.92347 1.25516 1.02412 0.98627 0.99622 1.69791 1.52557 1.18390 1.20922 0.85138 0.77349 0.78278 0.78983 1.21019 1.21133 1.20242 1.22404 0.95957 1.01344 0.99592 1.22877 1.00838 0.93812 1.04306 1.23050 1.03701 1.01073 0.89119 0.90765 0.95685 0.88447 0.89520 0.86781 0.86921 0.91763 0.90946 0.90492 0.92586 0.93436 0.98822 0.95158 0.79262 0.93722 0.85455 0.89518 0.88513 0.86014 0.87791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.81 113.37 1.23 1.74 16 2 O -0.38 -9.99 8.24 -130.00 -1.07 -11.06 16 3 C 0.11 2.56 2.03 29.85 0.06 2.62 16 4 H 0.12 1.81 7.06 -2.39 -0.02 1.79 16 5 C 0.48 15.67 6.86 87.66 0.60 16.27 16 6 O -0.56 -25.40 12.08 15.96 0.19 -25.21 16 7 N -0.60 -17.14 2.96 -795.83 -2.36 -19.50 16 8 C 0.09 1.54 5.44 86.36 0.47 2.01 16 9 C -0.13 -1.88 5.95 30.67 0.18 -1.70 16 10 C -0.11 -2.42 5.89 30.62 0.18 -2.24 16 11 C -0.12 -3.96 5.08 30.53 0.16 -3.81 16 12 C 0.15 5.51 3.08 44.83 0.14 5.65 16 13 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 14 C 0.17 8.73 4.13 86.38 0.36 9.08 16 15 N -0.74 -43.04 5.38 -343.47 -1.85 -44.89 16 16 C -0.25 -15.62 9.99 84.03 0.84 -14.78 16 17 H 0.06 3.74 7.83 -2.91 -0.02 3.72 16 18 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 19 N -0.97 -61.78 13.06 21.65 0.28 -61.49 16 20 Si 0.97 49.68 29.55 68.60 2.03 51.71 16 21 H -0.28 -14.06 7.11 99.48 0.71 -13.35 16 22 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 23 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 24 C -0.17 -3.20 4.57 -10.79 -0.05 -3.25 16 25 C -0.18 -3.57 9.87 30.60 0.30 -3.27 16 26 C -0.13 -1.64 10.19 30.60 0.31 -1.33 16 27 H 0.07 0.98 8.08 -2.39 -0.02 0.96 16 28 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.11 1.22 4.85 -2.39 -0.01 1.21 16 32 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.06 1.02 7.13 -2.39 -0.02 1.00 16 34 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 2.17 6.91 -2.39 -0.02 2.15 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 38 H -0.01 -0.34 7.31 -2.39 -0.02 -0.36 16 39 H 0.03 1.70 6.16 -2.39 -0.01 1.68 16 40 H 0.37 21.83 6.39 -92.71 -0.59 21.24 16 41 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 42 H 0.13 2.18 5.69 -2.39 -0.01 2.16 16 43 H 0.09 2.09 7.06 -2.39 -0.02 2.07 16 44 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -82.34 354.34 2.84 -79.50 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.38 Total: 27.78 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 5.24 Total: 3.17 kcal Atomic # 7 Polarization: -121.96 SS G_CDS: -3.92 Total: -125.88 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -0.88 Total: -36.27 kcal Atomic # 14 Polarization: 49.68 SS G_CDS: 2.03 Total: 51.71 kcal Total: -82.34 2.84 -79.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274990823.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.820 kcal (2) G-P(sol) polarization free energy of solvation -82.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds