Wall clock time and date at job start Tue Mar 31 2020 03:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00489 * 2 1 4 4 C 1.53004 * 112.84682 * 294.67310 * 3 2 1 5 5 C 1.50703 * 109.47263 * 291.10641 * 4 3 2 6 6 O 1.21281 * 119.99827 * 355.50470 * 5 4 3 7 7 N 1.34778 * 119.99983 * 175.50941 * 5 4 3 8 8 C 1.46496 * 119.99539 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.46856 * 179.97438 * 8 7 5 10 10 H 1.09004 * 110.64017 * 51.85519 * 9 8 7 11 11 C 1.55157 * 110.72191 * 174.99882 * 9 8 7 12 12 C 1.54902 * 101.61800 * 153.84850 * 11 9 8 13 13 N 1.47477 * 104.81146 * 323.04191 * 12 11 9 14 14 C 1.36928 * 125.62893 * 204.07300 * 13 12 11 15 15 H 1.08008 * 120.00054 * 180.02562 * 14 13 12 16 16 C 1.38807 * 120.00530 * 359.97438 * 14 13 12 17 17 N 1.31623 * 119.99666 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00688 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46881 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47370 * 119.99829 * 18 16 14 21 21 H 1.48493 * 109.47494 * 240.00614 * 18 16 14 22 22 C 1.47021 * 108.72113 * 24.07202 * 13 12 11 23 23 C 1.53778 * 113.69268 * 65.93907 * 3 2 1 24 24 C 1.53787 * 87.07835 * 89.13145 * 23 3 2 25 25 C 1.53777 * 113.61424 * 163.48112 * 3 2 1 26 26 H 1.09008 * 109.46538 * 56.03872 * 1 2 3 27 27 H 1.08998 * 109.47518 * 176.03430 * 1 2 3 28 28 H 1.08996 * 109.47135 * 296.04164 * 1 2 3 29 29 H 1.08997 * 109.46989 * 171.10607 * 4 3 2 30 30 H 1.09001 * 109.46732 * 51.10262 * 4 3 2 31 31 H 0.96994 * 119.99831 * 359.97438 * 7 5 4 32 32 H 1.08995 * 109.47788 * 59.99963 * 8 7 5 33 33 H 1.08999 * 109.47470 * 299.99290 * 8 7 5 34 34 H 1.09007 * 111.00194 * 271.93626 * 11 9 8 35 35 H 1.08997 * 111.00158 * 35.74959 * 11 9 8 36 36 H 1.09002 * 110.37049 * 81.84536 * 12 11 9 37 37 H 1.09004 * 110.36875 * 204.16971 * 12 11 9 38 38 H 0.97004 * 119.99807 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.88359 * 239.56248 * 22 13 12 40 40 H 1.08994 * 110.01092 * 118.46561 * 22 13 12 41 41 H 1.09000 * 113.61606 * 203.67606 * 23 3 2 42 42 H 1.08996 * 113.61556 * 334.58507 * 23 3 2 43 43 H 1.09004 * 113.61448 * 270.88236 * 24 23 3 44 44 H 1.08998 * 113.61218 * 139.98090 * 24 23 3 45 45 H 1.09000 * 113.61835 * 25.34611 * 25 3 2 46 46 H 1.09004 * 113.61396 * 156.25363 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7143 2.0875 -1.2813 5 6 2.4499 1.4573 -2.4358 6 8 3.2062 0.5298 -2.2392 7 7 2.2673 1.9245 -3.6868 8 6 2.9819 1.3115 -4.8091 9 6 2.5983 2.0235 -6.1079 10 1 2.7258 3.1014 -6.0073 11 6 3.4323 1.4809 -7.2984 12 6 2.4904 1.7658 -8.4947 13 7 1.1336 1.5135 -7.9747 14 6 0.0395 1.1820 -8.7283 15 1 -0.9152 1.0170 -8.2508 16 6 0.1568 1.0590 -10.1059 17 7 1.3201 1.2605 -10.6878 18 14 -1.3357 0.6061 -11.1339 19 1 -2.5140 0.4339 -10.2466 20 1 -1.6085 1.6879 -12.1139 21 1 -1.0713 -0.6630 -11.8581 22 6 1.1503 1.6766 -6.5137 23 6 1.7372 2.1034 1.2858 24 6 3.0200 1.4744 1.8549 25 6 3.4949 1.3186 0.4006 26 1 -0.3633 0.5741 -0.8524 27 1 -0.3634 -1.0252 -0.0711 28 1 -0.3633 0.4512 0.9233 29 1 2.0431 3.1197 -1.1610 30 1 0.6426 2.0682 -1.4793 31 1 1.6622 2.6661 -3.8440 32 1 2.7123 0.2578 -4.8796 33 1 4.0563 1.4017 -4.6486 34 1 4.3697 2.0279 -7.4003 35 1 3.6159 0.4118 -7.1916 36 1 2.5867 2.8033 -8.8147 37 1 2.7122 1.0908 -9.3214 38 1 1.4022 1.1742 -11.6505 39 1 0.8433 0.7476 -6.0334 40 1 0.4797 2.4844 -6.2209 41 1 1.8028 3.1832 1.1518 42 1 0.8312 1.7948 1.8071 43 1 2.8522 0.5250 2.3636 44 1 3.6241 2.1680 2.4397 45 1 4.0078 0.3764 0.2073 46 1 4.0410 2.1838 0.0247 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691136203.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:01 Heat of formation + Delta-G solvation = -36.002906 kcal Electronic energy + Delta-G solvation = -24414.269892 eV Core-core repulsion = 20919.503860 eV Total energy + Delta-G solvation = -3494.766032 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.62315 -38.97434 -37.53529 -35.74391 -34.55755 -32.54509 -30.86930 -29.57658 -28.11025 -27.26405 -25.74706 -25.47092 -23.90797 -22.81209 -20.67086 -19.94152 -19.74963 -19.45596 -17.18284 -16.80134 -16.50899 -16.20792 -15.76219 -15.28835 -14.97175 -14.79945 -14.59677 -14.32911 -13.96401 -13.70247 -13.40004 -13.00173 -12.58193 -12.50315 -12.22381 -11.91217 -11.76160 -11.63586 -11.54041 -11.47976 -11.23216 -11.02963 -10.95363 -10.82666 -10.43120 -10.31463 -10.11244 -9.99927 -9.87969 -9.76243 -9.58893 -9.38373 -8.88033 -8.66154 -6.84116 -5.66380 -3.08006 2.76152 3.22941 3.38876 3.44216 3.46819 3.53515 4.23107 4.36440 4.46990 4.47947 4.63776 4.90032 5.02900 5.06636 5.11938 5.16144 5.25555 5.27905 5.33635 5.41054 5.45063 5.50023 5.52971 5.56040 5.64902 5.71832 5.90223 5.97551 6.03493 6.07560 6.09910 6.14759 6.35238 6.50198 6.55996 6.59266 6.74149 6.91368 7.10371 7.50769 7.62011 7.62537 7.85078 8.35555 8.36122 9.21292 9.82313 10.47219 11.37712 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.028099 B = 0.002818 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.231425 B = 9933.596476 C =10590.124871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.348 6.348 3 C 0.110 3.890 4 C -0.162 4.162 5 C 0.512 3.488 6 O -0.527 6.527 7 N -0.730 5.730 8 C 0.134 3.866 9 C -0.114 4.114 10 H 0.075 0.925 11 C -0.135 4.135 12 C 0.152 3.848 13 N -0.605 5.605 14 C -0.222 4.222 15 H 0.077 0.923 16 C -0.012 4.012 17 N -0.922 5.922 18 Si 0.914 3.086 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.290 1.290 22 C 0.142 3.858 23 C -0.165 4.165 24 C -0.139 4.139 25 C -0.110 4.110 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.041 0.959 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.399 0.601 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.012 0.988 37 H 0.107 0.893 38 H 0.251 0.749 39 H 0.023 0.977 40 H 0.017 0.983 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.084 0.916 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.961 4.232 22.762 23.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.266 6.266 3 C 0.069 3.931 4 C -0.202 4.202 5 C 0.297 3.703 6 O -0.403 6.403 7 N -0.382 5.382 8 C 0.010 3.990 9 C -0.133 4.133 10 H 0.093 0.907 11 C -0.175 4.175 12 C 0.027 3.973 13 N -0.331 5.331 14 C -0.350 4.350 15 H 0.095 0.905 16 C -0.208 4.208 17 N -0.571 5.571 18 Si 0.745 3.255 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.217 1.217 22 C 0.016 3.984 23 C -0.203 4.203 24 C -0.176 4.176 25 C -0.148 4.148 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.060 0.940 29 H 0.121 0.879 30 H 0.112 0.888 31 H 0.233 0.767 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.030 0.970 37 H 0.125 0.875 38 H 0.062 0.938 39 H 0.041 0.959 40 H 0.035 0.965 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.556 3.334 22.677 23.063 hybrid contribution -1.465 0.531 -0.752 1.730 sum 1.091 3.865 21.925 22.290 Atomic orbital electron populations 1.22782 0.81679 1.02885 0.99860 1.88037 1.19024 1.25086 1.94502 1.22209 0.96142 0.83708 0.91022 1.22217 1.02192 1.01221 0.94554 1.20383 0.82569 0.83634 0.83703 1.90713 1.37069 1.28006 1.84527 1.46132 1.47652 1.37420 1.06964 1.21422 0.95990 0.97507 0.84075 1.22441 0.97879 0.99454 0.93565 0.90671 1.23006 0.98009 1.00218 0.96243 1.21939 0.81916 0.99349 0.94075 1.44530 1.06940 1.81592 1.00047 1.19119 0.88041 1.39151 0.88717 0.90517 1.24795 0.97313 1.02191 0.96473 1.69813 1.21963 1.56217 1.09108 0.85996 0.81548 0.77727 0.80219 1.20551 1.21762 1.21701 1.21316 0.92791 0.97239 0.87018 1.23586 0.99248 1.00177 0.97273 1.22820 0.96781 1.01096 0.96928 1.22852 0.93864 1.03562 0.94475 0.93925 0.89509 0.94041 0.87874 0.88830 0.76738 0.91376 0.91796 0.92154 0.91842 0.97020 0.87550 0.93772 0.95864 0.96519 0.89216 0.90949 0.89878 0.91357 0.89702 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.63 101.05 1.07 1.30 16 2 O -0.35 -4.38 10.29 -36.88 -0.38 -4.76 16 3 C 0.11 1.14 0.39 -89.81 -0.04 1.10 16 4 C -0.16 -1.54 5.15 -27.88 -0.14 -1.69 16 5 C 0.51 6.84 7.62 -10.98 -0.08 6.76 16 6 O -0.53 -9.07 14.70 3.91 0.06 -9.01 16 7 N -0.73 -9.31 5.47 -60.30 -0.33 -9.64 16 8 C 0.13 2.00 5.02 -4.04 -0.02 1.98 16 9 C -0.11 -1.90 2.96 -88.78 -0.26 -2.16 16 10 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 11 C -0.14 -2.53 6.53 -24.59 -0.16 -2.69 16 12 C 0.15 3.68 5.89 -2.50 -0.01 3.66 16 13 N -0.61 -15.52 3.40 -170.04 -0.58 -16.10 16 14 C -0.22 -6.22 10.27 -15.07 -0.15 -6.37 16 15 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 16 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 17 N -0.92 -26.97 10.09 55.49 0.56 -26.41 16 18 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 C 0.14 2.91 6.75 -3.06 -0.02 2.89 16 23 C -0.17 -1.27 7.21 -25.92 -0.19 -1.45 16 24 C -0.14 -1.15 8.02 -25.92 -0.21 -1.35 16 25 C -0.11 -1.15 6.07 -25.92 -0.16 -1.31 16 26 H 0.04 0.38 6.50 -51.92 -0.34 0.04 16 27 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.31 6.85 -51.93 -0.36 -0.05 16 29 H 0.10 0.72 7.99 -51.93 -0.42 0.31 16 30 H 0.09 0.77 6.55 -51.93 -0.34 0.43 16 31 H 0.40 4.21 8.47 -40.82 -0.35 3.87 16 32 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 35 H 0.06 1.19 8.05 -51.93 -0.42 0.77 16 36 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.11 2.91 5.88 -51.93 -0.31 2.61 16 38 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.02 0.49 7.68 -51.93 -0.40 0.09 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.09 0.54 8.00 -51.93 -0.42 0.13 16 42 H 0.07 0.52 6.81 -51.93 -0.35 0.17 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 1.08 7.98 -51.93 -0.41 0.67 16 46 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 LS Contribution 360.87 15.07 5.44 5.44 Total: -1.00 -33.15 360.87 -8.58 -41.73 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -7.86 Total: 1.43 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -0.47 Total: 0.22 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.35 Total: -52.15 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.32 Total: -13.77 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.15 -8.58 -41.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691136203.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.728 kcal (2) G-P(sol) polarization free energy of solvation -33.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds