Wall clock time and date at job start Tue Mar 31 2020 03:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00489 * 2 1 4 4 C 1.53004 * 112.84682 * 294.67310 * 3 2 1 5 5 C 1.50703 * 109.47263 * 291.10641 * 4 3 2 6 6 O 1.21281 * 119.99827 * 355.50470 * 5 4 3 7 7 N 1.34778 * 119.99983 * 175.50941 * 5 4 3 8 8 C 1.46496 * 119.99539 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.46856 * 179.97438 * 8 7 5 10 10 H 1.09004 * 110.64017 * 51.85519 * 9 8 7 11 11 C 1.55157 * 110.72191 * 174.99882 * 9 8 7 12 12 C 1.54902 * 101.61800 * 153.84850 * 11 9 8 13 13 N 1.47477 * 104.81146 * 323.04191 * 12 11 9 14 14 C 1.36928 * 125.62893 * 204.07300 * 13 12 11 15 15 H 1.08008 * 120.00054 * 180.02562 * 14 13 12 16 16 C 1.38807 * 120.00530 * 359.97438 * 14 13 12 17 17 N 1.31623 * 119.99666 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00688 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46881 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47370 * 119.99829 * 18 16 14 21 21 H 1.48493 * 109.47494 * 240.00614 * 18 16 14 22 22 C 1.47021 * 108.72113 * 24.07202 * 13 12 11 23 23 C 1.53778 * 113.69268 * 65.93907 * 3 2 1 24 24 C 1.53787 * 87.07835 * 89.13145 * 23 3 2 25 25 C 1.53777 * 113.61424 * 163.48112 * 3 2 1 26 26 H 1.09008 * 109.46538 * 56.03872 * 1 2 3 27 27 H 1.08998 * 109.47518 * 176.03430 * 1 2 3 28 28 H 1.08996 * 109.47135 * 296.04164 * 1 2 3 29 29 H 1.08997 * 109.46989 * 171.10607 * 4 3 2 30 30 H 1.09001 * 109.46732 * 51.10262 * 4 3 2 31 31 H 0.96994 * 119.99831 * 359.97438 * 7 5 4 32 32 H 1.08995 * 109.47788 * 59.99963 * 8 7 5 33 33 H 1.08999 * 109.47470 * 299.99290 * 8 7 5 34 34 H 1.09007 * 111.00194 * 271.93626 * 11 9 8 35 35 H 1.08997 * 111.00158 * 35.74959 * 11 9 8 36 36 H 1.09002 * 110.37049 * 81.84536 * 12 11 9 37 37 H 1.09004 * 110.36875 * 204.16971 * 12 11 9 38 38 H 0.97004 * 119.99807 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.88359 * 239.56248 * 22 13 12 40 40 H 1.08994 * 110.01092 * 118.46561 * 22 13 12 41 41 H 1.09000 * 113.61606 * 203.67606 * 23 3 2 42 42 H 1.08996 * 113.61556 * 334.58507 * 23 3 2 43 43 H 1.09004 * 113.61448 * 270.88236 * 24 23 3 44 44 H 1.08998 * 113.61218 * 139.98090 * 24 23 3 45 45 H 1.09000 * 113.61835 * 25.34611 * 25 3 2 46 46 H 1.09004 * 113.61396 * 156.25363 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7143 2.0875 -1.2813 5 6 2.4499 1.4573 -2.4358 6 8 3.2062 0.5298 -2.2392 7 7 2.2673 1.9245 -3.6868 8 6 2.9819 1.3115 -4.8091 9 6 2.5983 2.0235 -6.1079 10 1 2.7258 3.1014 -6.0073 11 6 3.4323 1.4809 -7.2984 12 6 2.4904 1.7658 -8.4947 13 7 1.1336 1.5135 -7.9747 14 6 0.0395 1.1820 -8.7283 15 1 -0.9152 1.0170 -8.2508 16 6 0.1568 1.0590 -10.1059 17 7 1.3201 1.2605 -10.6878 18 14 -1.3357 0.6061 -11.1339 19 1 -2.5140 0.4339 -10.2466 20 1 -1.6085 1.6879 -12.1139 21 1 -1.0713 -0.6630 -11.8581 22 6 1.1503 1.6766 -6.5137 23 6 1.7372 2.1034 1.2858 24 6 3.0200 1.4744 1.8549 25 6 3.4949 1.3186 0.4006 26 1 -0.3633 0.5741 -0.8524 27 1 -0.3634 -1.0252 -0.0711 28 1 -0.3633 0.4512 0.9233 29 1 2.0431 3.1197 -1.1610 30 1 0.6426 2.0682 -1.4793 31 1 1.6622 2.6661 -3.8440 32 1 2.7123 0.2578 -4.8796 33 1 4.0563 1.4017 -4.6486 34 1 4.3697 2.0279 -7.4003 35 1 3.6159 0.4118 -7.1916 36 1 2.5867 2.8033 -8.8147 37 1 2.7122 1.0908 -9.3214 38 1 1.4022 1.1742 -11.6505 39 1 0.8433 0.7476 -6.0334 40 1 0.4797 2.4844 -6.2209 41 1 1.8028 3.1832 1.1518 42 1 0.8312 1.7948 1.8071 43 1 2.8522 0.5250 2.3636 44 1 3.6241 2.1680 2.4397 45 1 4.0078 0.3764 0.2073 46 1 4.0410 2.1838 0.0247 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691136203.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:01 Heat of formation + Delta-G solvation = -58.484571 kcal Electronic energy + Delta-G solvation = -24415.244770 eV Core-core repulsion = 20919.503860 eV Total energy + Delta-G solvation = -3495.740910 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.46418 -40.06021 -39.07234 -36.49980 -35.97133 -34.30614 -32.07304 -31.12942 -29.64884 -27.97285 -27.28270 -26.36533 -25.35757 -23.80565 -22.18929 -21.40491 -20.97373 -20.32395 -18.91430 -18.02883 -17.50646 -17.09225 -16.94935 -16.65647 -16.08884 -15.95329 -15.91142 -15.52785 -15.04116 -14.82080 -14.48791 -14.29725 -14.25914 -13.55637 -13.42406 -13.23561 -13.19119 -12.99643 -12.80694 -12.71367 -12.52209 -12.25805 -11.98697 -11.94078 -11.87079 -11.82985 -11.66266 -11.58898 -11.38530 -11.07901 -10.77122 -10.72881 -10.28005 -10.01542 -8.89014 -7.78610 -5.22785 1.45758 1.46838 1.57021 1.75313 2.24198 2.48676 2.81634 3.31181 3.50212 3.64273 3.69748 3.73660 3.79261 3.96308 3.99247 4.05673 4.17741 4.35841 4.42255 4.45715 4.50134 4.57920 4.65283 4.65586 4.70926 4.81190 4.82979 4.87658 4.91131 4.91825 5.05872 5.07972 5.12390 5.22100 5.29691 5.35711 5.43459 5.45704 5.52366 5.65478 5.82110 6.30921 6.39494 6.64306 7.10333 7.36286 7.78149 8.41675 9.23614 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.028099 B = 0.002818 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.231425 B = 9933.596476 C =10590.124871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.384 6.384 3 C 0.096 3.904 4 C -0.155 4.155 5 C 0.508 3.492 6 O -0.571 6.571 7 N -0.722 5.722 8 C 0.146 3.854 9 C -0.092 4.092 10 H 0.099 0.901 11 C -0.124 4.124 12 C 0.152 3.848 13 N -0.629 5.629 14 C -0.238 4.238 15 H 0.080 0.920 16 C -0.069 4.069 17 N -0.949 5.949 18 Si 0.980 3.020 19 H -0.267 1.267 20 H -0.291 1.291 21 H -0.292 1.292 22 C 0.139 3.861 23 C -0.149 4.149 24 C -0.135 4.135 25 C -0.119 4.119 26 H 0.046 0.954 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.137 0.863 30 H 0.111 0.889 31 H 0.413 0.587 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.059 0.941 36 H -0.008 1.008 37 H 0.070 0.930 38 H 0.247 0.753 39 H 0.017 0.983 40 H 0.030 0.970 41 H 0.115 0.885 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.048 0.952 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.030 6.014 24.695 25.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.303 6.303 3 C 0.056 3.944 4 C -0.195 4.195 5 C 0.295 3.705 6 O -0.450 6.450 7 N -0.375 5.375 8 C 0.022 3.978 9 C -0.111 4.111 10 H 0.117 0.883 11 C -0.163 4.163 12 C 0.027 3.973 13 N -0.355 5.355 14 C -0.367 4.367 15 H 0.097 0.903 16 C -0.262 4.262 17 N -0.599 5.599 18 Si 0.808 3.192 19 H -0.191 1.191 20 H -0.218 1.218 21 H -0.219 1.219 22 C 0.014 3.986 23 C -0.186 4.186 24 C -0.172 4.172 25 C -0.157 4.157 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.155 0.845 30 H 0.129 0.871 31 H 0.249 0.751 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.010 0.990 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.035 0.965 40 H 0.048 0.952 41 H 0.133 0.867 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.067 0.933 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.601 5.142 24.645 25.227 hybrid contribution -1.160 -0.055 -1.341 1.774 sum 0.441 5.088 23.304 23.857 Atomic orbital electron populations 1.22913 0.80391 1.03245 1.01070 1.87991 1.20664 1.26881 1.94800 1.22441 0.95840 0.83521 0.92639 1.22292 1.02610 1.02351 0.92222 1.21110 0.81972 0.82955 0.84433 1.90708 1.39115 1.30044 1.85150 1.46031 1.47554 1.37574 1.06333 1.21105 0.96598 0.96056 0.84071 1.22280 0.94694 1.00816 0.93343 0.88309 1.22852 0.98248 1.00632 0.94552 1.21732 0.82973 0.97133 0.95414 1.44858 1.06883 1.81576 1.02232 1.19484 0.89037 1.38757 0.89433 0.90259 1.25647 1.00074 1.02739 0.97694 1.70069 1.23745 1.57245 1.08882 0.84981 0.78773 0.76936 0.78471 1.19101 1.21765 1.21931 1.21486 0.95596 0.97286 0.84223 1.23546 0.98917 1.01107 0.95022 1.22786 0.97511 1.01192 0.95719 1.22910 0.94180 1.02124 0.96474 0.93504 0.89650 0.92018 0.84501 0.87124 0.75125 0.93746 0.91053 0.89201 0.92254 0.98992 0.91237 0.94337 0.96545 0.95179 0.86703 0.90262 0.90996 0.89557 0.93293 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.63 113.37 1.20 1.54 16 2 O -0.38 -9.42 10.29 -147.41 -1.52 -10.94 16 3 C 0.10 1.80 0.39 -10.27 0.00 1.80 16 4 C -0.16 -2.49 5.15 29.85 0.15 -2.34 16 5 C 0.51 12.70 7.62 87.66 0.67 13.36 16 6 O -0.57 -19.57 14.70 -1.46 -0.02 -19.59 16 7 N -0.72 -16.70 5.47 -463.07 -2.53 -19.24 16 8 C 0.15 4.14 5.02 86.38 0.43 4.57 16 9 C -0.09 -2.88 2.96 -9.60 -0.03 -2.91 16 10 H 0.10 2.70 8.14 -2.38 -0.02 2.68 16 11 C -0.12 -4.50 6.53 31.98 0.21 -4.29 16 12 C 0.15 7.50 5.89 86.84 0.51 8.01 16 13 N -0.63 -32.48 3.40 -691.87 -2.35 -34.83 16 14 C -0.24 -13.45 10.27 84.03 0.86 -12.59 16 15 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 16 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 17 N -0.95 -57.01 10.09 21.65 0.22 -56.79 16 18 Si 0.98 45.90 29.55 68.60 2.03 47.93 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 21 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 22 C 0.14 5.52 6.75 86.73 0.59 6.11 16 23 C -0.15 -1.79 7.21 31.12 0.22 -1.57 16 24 C -0.13 -1.98 8.02 31.12 0.25 -1.73 16 25 C -0.12 -2.39 6.07 31.12 0.19 -2.20 16 26 H 0.05 0.73 6.50 -2.38 -0.02 0.72 16 27 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.06 0.77 6.85 -2.39 -0.02 0.76 16 29 H 0.14 1.28 7.99 -2.39 -0.02 1.26 16 30 H 0.11 1.43 6.55 -2.39 -0.02 1.41 16 31 H 0.41 7.32 8.47 -92.71 -0.79 6.53 16 32 H 0.04 1.49 7.93 -2.39 -0.02 1.47 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.09 2.75 8.14 -2.38 -0.02 2.73 16 35 H 0.06 2.20 8.05 -2.39 -0.02 2.18 16 36 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 37 H 0.07 3.95 5.88 -2.38 -0.01 3.93 16 38 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 39 H 0.02 0.68 7.68 -2.39 -0.02 0.66 16 40 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.11 0.83 8.00 -2.39 -0.02 0.81 16 42 H 0.08 0.87 6.81 -2.39 -0.02 0.86 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 44 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.05 1.31 7.98 -2.39 -0.02 1.29 16 46 H 0.10 1.69 8.10 -2.38 -0.02 1.67 16 Total: -1.00 -74.79 360.87 1.73 -73.06 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.18 Total: 16.11 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 5.73 Total: 4.27 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -4.66 Total: -110.85 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -1.54 Total: -30.53 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -74.79 1.73 -73.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691136203.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.579 kcal (2) G-P(sol) polarization free energy of solvation -74.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds