Wall clock time and date at job start Tue Mar 31 2020 03:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99791 * 2 1 4 4 C 1.52994 * 109.47213 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47172 * 175.89479 * 4 3 2 6 6 C 1.50707 * 115.55032 * 294.74525 * 5 4 3 7 7 O 1.21280 * 119.99859 * 123.19810 * 6 5 4 8 8 N 1.34777 * 119.99505 * 303.19973 * 6 5 4 9 9 C 1.46501 * 119.99563 * 175.37365 * 8 6 5 10 10 C 1.52997 * 109.47044 * 179.72661 * 9 8 6 11 11 H 1.08995 * 110.88467 * 302.56714 * 10 9 8 12 12 C 1.55167 * 111.00291 * 178.65117 * 10 9 8 13 13 C 1.54318 * 102.93970 * 206.42261 * 12 10 9 14 14 N 1.47025 * 107.27605 * 22.19221 * 13 12 10 15 15 C 1.36935 * 125.65259 * 181.09682 * 14 13 12 16 16 H 1.07995 * 120.00062 * 185.20234 * 15 14 13 17 17 C 1.38810 * 119.99813 * 5.20335 * 15 14 13 18 18 N 1.31629 * 120.00062 * 5.71095 * 17 15 14 19 19 Si 1.86803 * 120.00122 * 185.70719 * 17 15 14 20 20 H 1.48505 * 109.46874 * 94.99709 * 19 17 15 21 21 H 1.48500 * 109.47349 * 214.99643 * 19 17 15 22 22 H 1.48494 * 109.46823 * 335.00132 * 19 17 15 23 23 C 1.47429 * 108.69867 * 1.05901 * 14 13 12 24 24 C 1.53003 * 117.50021 * 80.41574 * 5 4 3 25 25 C 1.53002 * 117.49885 * 149.07578 * 5 4 3 26 26 H 1.08999 * 109.46938 * 60.00339 * 1 2 3 27 27 H 1.09000 * 109.46743 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47869 * 299.99968 * 1 2 3 29 29 H 1.09000 * 109.47000 * 59.99546 * 3 2 1 30 30 H 1.09004 * 109.46808 * 300.00001 * 3 2 1 31 31 H 1.09001 * 109.47272 * 55.89676 * 4 3 2 32 32 H 1.08999 * 109.47234 * 295.89133 * 4 3 2 33 33 H 0.97003 * 120.00364 * 355.10173 * 8 6 5 34 34 H 1.09003 * 109.46987 * 299.72733 * 9 8 6 35 35 H 1.09006 * 109.47114 * 59.72211 * 9 8 6 36 36 H 1.09002 * 110.71927 * 324.78353 * 12 10 9 37 37 H 1.08993 * 110.71921 * 88.05786 * 12 10 9 38 38 H 1.09005 * 109.88397 * 262.77399 * 13 12 10 39 39 H 1.09001 * 110.01319 * 141.68418 * 13 12 10 40 40 H 0.96998 * 119.99571 * 180.02562 * 18 17 15 41 41 H 1.09003 * 110.36437 * 217.03569 * 23 14 13 42 42 H 1.08999 * 110.45811 * 94.75829 * 23 14 13 43 43 H 1.08999 * 117.49723 * 215.00515 * 24 5 4 44 44 H 1.08999 * 117.49695 * 0.02562 * 24 5 4 45 45 H 1.09000 * 117.49837 * 359.97438 * 25 5 4 46 46 H 1.09004 * 117.49747 * 144.99967 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 6 4.1573 2.5789 -0.1026 6 6 3.8951 3.3137 -1.3920 7 8 3.3693 4.4064 -1.3710 8 7 4.2450 2.7566 -2.5683 9 6 3.8995 3.4234 -3.8261 10 6 4.4140 2.5914 -5.0025 11 1 5.4905 2.4379 -4.9285 12 6 4.0370 3.2496 -6.3561 13 6 3.9899 2.0480 -7.3233 14 7 3.7773 0.8414 -6.5106 15 6 3.6974 -0.4392 -6.9889 16 1 3.4552 -1.2515 -6.3197 17 6 3.9277 -0.6933 -8.3340 18 7 4.3323 0.2762 -9.1271 19 14 3.6636 -2.4112 -9.0187 20 1 2.2998 -2.5088 -9.5982 21 1 4.6710 -2.6833 -10.0752 22 1 3.8099 -3.4070 -7.9269 23 6 3.6652 1.2385 -5.0953 24 6 4.2451 3.4100 1.1790 25 6 5.5119 2.7999 0.5737 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3635 0.5138 0.8899 29 1 1.6884 1.8464 0.8899 30 1 1.6885 1.8464 -0.8900 31 1 3.8524 0.5816 -0.8501 32 1 3.8618 0.7090 0.9254 33 1 4.7290 1.9160 -2.5819 34 1 2.8165 3.5242 -3.8984 35 1 4.3588 4.4117 -3.8515 36 1 3.0615 3.7316 -6.2922 37 1 4.8014 3.9629 -6.6642 38 1 4.9335 1.9696 -7.8634 39 1 3.1681 2.1692 -8.0291 40 1 4.4929 0.0987 -10.0671 41 1 4.1415 0.4966 -4.4543 42 1 2.6190 1.3641 -4.8165 43 1 4.1132 4.4883 1.0895 44 1 3.8601 2.9635 2.0957 45 1 5.9596 1.9524 1.0925 46 1 6.2133 3.4770 0.0860 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691146498.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:58 Heat of formation + Delta-G solvation = -43.164288 kcal Electronic energy + Delta-G solvation = -24493.613408 eV Core-core repulsion = 20998.536835 eV Total energy + Delta-G solvation = -3495.076573 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.33110 -38.18396 -37.71979 -36.71515 -34.65043 -32.49182 -31.24200 -29.83903 -28.35518 -26.74068 -25.76317 -24.37729 -23.39972 -22.74979 -22.18344 -20.25644 -19.92170 -19.10830 -17.23092 -16.77032 -16.57066 -16.16552 -15.93716 -15.43588 -15.10905 -14.83384 -14.66074 -14.57029 -13.80406 -13.57920 -13.48846 -13.02244 -12.57570 -12.37397 -12.31512 -12.00544 -11.83674 -11.74190 -11.69936 -11.39715 -11.36312 -10.89866 -10.80686 -10.77505 -10.45538 -10.27905 -10.12985 -9.99454 -9.86851 -9.82825 -9.67328 -9.65181 -8.96370 -8.61576 -6.82581 -5.69998 -3.06019 2.51471 3.11479 3.32044 3.40091 3.45361 3.47296 3.69802 4.40302 4.49332 4.55740 4.62923 4.70771 4.93929 5.05415 5.11148 5.19579 5.23962 5.25308 5.30708 5.36102 5.42458 5.49430 5.52538 5.54766 5.63285 5.68119 5.76731 5.80710 5.88286 5.89106 6.04176 6.05847 6.33284 6.44996 6.50869 6.53090 6.68406 6.90821 6.97226 7.50488 7.55333 7.65632 7.83103 8.22780 8.27231 9.21626 9.82553 10.48628 11.39768 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.014880 B = 0.003716 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.224666 B = 7533.360919 C = 8705.987737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.063 3.937 4 C -0.075 4.075 5 C -0.161 4.161 6 C 0.548 3.452 7 O -0.543 6.543 8 N -0.718 5.718 9 C 0.132 3.868 10 C -0.118 4.118 11 H 0.080 0.920 12 C -0.133 4.133 13 C 0.172 3.828 14 N -0.605 5.605 15 C -0.229 4.229 16 H 0.077 0.923 17 C -0.008 4.008 18 N -0.920 5.920 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.143 3.857 24 C -0.145 4.145 25 C -0.151 4.151 26 H 0.043 0.957 27 H 0.086 0.914 28 H 0.039 0.961 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.404 0.596 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.030 0.970 40 H 0.252 0.748 41 H 0.036 0.964 42 H 0.018 0.982 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.106 0.894 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.614 4.832 19.954 20.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.310 6.310 3 C -0.013 4.013 4 C -0.113 4.113 5 C -0.164 4.164 6 C 0.333 3.667 7 O -0.421 6.421 8 N -0.368 5.368 9 C 0.009 3.991 10 C -0.138 4.138 11 H 0.098 0.902 12 C -0.172 4.172 13 C 0.047 3.953 14 N -0.331 5.331 15 C -0.357 4.357 16 H 0.095 0.905 17 C -0.204 4.204 18 N -0.568 5.568 19 Si 0.742 3.258 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.206 1.206 23 C 0.017 3.983 24 C -0.182 4.182 25 C -0.188 4.188 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.238 0.762 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.036 0.964 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.124 0.876 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.875 5.327 19.720 20.446 hybrid contribution -0.199 -1.066 -0.571 1.226 sum -1.073 4.261 19.149 19.647 Atomic orbital electron populations 1.22738 0.80820 1.02805 1.00050 1.87845 1.19903 1.27811 1.95463 1.22457 0.93578 0.84680 1.00627 1.20955 0.93305 0.92808 1.04185 1.21400 1.03969 0.97724 0.93323 1.19433 0.77962 0.85224 0.84088 1.90687 1.43509 1.20522 1.87365 1.46016 1.58492 1.26652 1.05640 1.21416 1.00358 0.95784 0.81547 1.22621 1.00492 0.96958 0.93684 0.90161 1.22834 1.00200 0.99260 0.94947 1.21215 1.01141 0.82088 0.90833 1.44475 1.85347 1.03188 1.00091 1.19069 1.40593 0.83275 0.92784 0.90482 1.24812 1.01412 0.97766 0.96451 1.69965 1.51480 1.30567 1.04777 0.86109 0.77457 0.83596 0.78680 1.21669 1.21738 1.20588 1.21562 0.96152 0.92473 0.88162 1.23027 1.00309 1.00300 0.94589 1.23093 0.89865 1.03572 1.02305 0.93839 0.89526 0.94227 0.93141 0.93156 0.89857 0.90028 0.76172 0.91506 0.91651 0.92341 0.91922 0.92110 0.95133 0.93797 0.94606 0.96393 0.87596 0.87913 0.87581 0.88147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.39 -4.80 10.70 -35.23 -0.38 -5.17 16 3 C 0.06 0.70 5.86 37.15 0.22 0.92 16 4 C -0.07 -0.73 5.44 -26.73 -0.15 -0.88 16 5 C -0.16 -1.63 1.91 -155.65 -0.30 -1.92 16 6 C 0.55 7.35 6.46 -10.98 -0.07 7.27 16 7 O -0.54 -9.16 16.51 5.56 0.09 -9.07 16 8 N -0.72 -9.29 5.39 -60.29 -0.32 -9.62 16 9 C 0.13 1.92 5.13 -4.04 -0.02 1.90 16 10 C -0.12 -1.96 3.10 -88.47 -0.27 -2.23 16 11 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 12 C -0.13 -2.43 6.42 -24.89 -0.16 -2.59 16 13 C 0.17 4.15 5.43 -3.07 -0.02 4.13 16 14 N -0.60 -15.37 3.39 -170.07 -0.58 -15.95 16 15 C -0.23 -6.39 10.27 -15.06 -0.15 -6.54 16 16 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 17 C -0.01 -0.23 5.46 -17.43 -0.10 -0.32 16 18 N -0.92 -27.04 10.41 55.49 0.58 -26.46 16 19 Si 0.91 22.12 29.56 -169.99 -5.02 17.10 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.14 2.87 6.41 -2.53 -0.02 2.85 16 24 C -0.14 -1.27 9.77 -26.69 -0.26 -1.53 16 25 C -0.15 -1.21 9.93 -26.69 -0.26 -1.47 16 26 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.64 7.59 -51.93 -0.39 0.24 16 31 H 0.08 0.85 7.97 -51.93 -0.41 0.43 16 32 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 33 H 0.40 4.67 8.17 -40.82 -0.33 4.33 16 34 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.63 6.95 -51.93 -0.36 1.27 16 39 H 0.03 0.81 7.91 -51.93 -0.41 0.40 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.02 0.37 8.00 -51.93 -0.42 -0.04 16 43 H 0.11 1.05 7.85 -51.93 -0.41 0.64 16 44 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 374.25 15.07 5.64 5.64 Total: -1.00 -32.71 374.25 -8.63 -41.34 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -8.19 Total: 1.18 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -0.45 Total: 1.01 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -0.32 Total: -52.03 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.29 Total: -14.25 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.71 -8.63 -41.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691146498.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.820 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds