Wall clock time and date at job start Tue Mar 31 2020 03:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99791 * 2 1 4 4 C 1.52994 * 109.47213 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47172 * 175.89479 * 4 3 2 6 6 C 1.50707 * 115.55032 * 294.74525 * 5 4 3 7 7 O 1.21280 * 119.99859 * 123.19810 * 6 5 4 8 8 N 1.34777 * 119.99505 * 303.19973 * 6 5 4 9 9 C 1.46501 * 119.99563 * 175.37365 * 8 6 5 10 10 C 1.52997 * 109.47044 * 179.72661 * 9 8 6 11 11 H 1.08995 * 110.88467 * 302.56714 * 10 9 8 12 12 C 1.55167 * 111.00291 * 178.65117 * 10 9 8 13 13 C 1.54318 * 102.93970 * 206.42261 * 12 10 9 14 14 N 1.47025 * 107.27605 * 22.19221 * 13 12 10 15 15 C 1.36935 * 125.65259 * 181.09682 * 14 13 12 16 16 H 1.07995 * 120.00062 * 185.20234 * 15 14 13 17 17 C 1.38810 * 119.99813 * 5.20335 * 15 14 13 18 18 N 1.31629 * 120.00062 * 5.71095 * 17 15 14 19 19 Si 1.86803 * 120.00122 * 185.70719 * 17 15 14 20 20 H 1.48505 * 109.46874 * 94.99709 * 19 17 15 21 21 H 1.48500 * 109.47349 * 214.99643 * 19 17 15 22 22 H 1.48494 * 109.46823 * 335.00132 * 19 17 15 23 23 C 1.47429 * 108.69867 * 1.05901 * 14 13 12 24 24 C 1.53003 * 117.50021 * 80.41574 * 5 4 3 25 25 C 1.53002 * 117.49885 * 149.07578 * 5 4 3 26 26 H 1.08999 * 109.46938 * 60.00339 * 1 2 3 27 27 H 1.09000 * 109.46743 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47869 * 299.99968 * 1 2 3 29 29 H 1.09000 * 109.47000 * 59.99546 * 3 2 1 30 30 H 1.09004 * 109.46808 * 300.00001 * 3 2 1 31 31 H 1.09001 * 109.47272 * 55.89676 * 4 3 2 32 32 H 1.08999 * 109.47234 * 295.89133 * 4 3 2 33 33 H 0.97003 * 120.00364 * 355.10173 * 8 6 5 34 34 H 1.09003 * 109.46987 * 299.72733 * 9 8 6 35 35 H 1.09006 * 109.47114 * 59.72211 * 9 8 6 36 36 H 1.09002 * 110.71927 * 324.78353 * 12 10 9 37 37 H 1.08993 * 110.71921 * 88.05786 * 12 10 9 38 38 H 1.09005 * 109.88397 * 262.77399 * 13 12 10 39 39 H 1.09001 * 110.01319 * 141.68418 * 13 12 10 40 40 H 0.96998 * 119.99571 * 180.02562 * 18 17 15 41 41 H 1.09003 * 110.36437 * 217.03569 * 23 14 13 42 42 H 1.08999 * 110.45811 * 94.75829 * 23 14 13 43 43 H 1.08999 * 117.49723 * 215.00515 * 24 5 4 44 44 H 1.08999 * 117.49695 * 0.02562 * 24 5 4 45 45 H 1.09000 * 117.49837 * 359.97438 * 25 5 4 46 46 H 1.09004 * 117.49747 * 144.99967 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 6 4.1573 2.5789 -0.1026 6 6 3.8951 3.3137 -1.3920 7 8 3.3693 4.4064 -1.3710 8 7 4.2450 2.7566 -2.5683 9 6 3.8995 3.4234 -3.8261 10 6 4.4140 2.5914 -5.0025 11 1 5.4905 2.4379 -4.9285 12 6 4.0370 3.2496 -6.3561 13 6 3.9899 2.0480 -7.3233 14 7 3.7773 0.8414 -6.5106 15 6 3.6974 -0.4392 -6.9889 16 1 3.4552 -1.2515 -6.3197 17 6 3.9277 -0.6933 -8.3340 18 7 4.3323 0.2762 -9.1271 19 14 3.6636 -2.4112 -9.0187 20 1 2.2998 -2.5088 -9.5982 21 1 4.6710 -2.6833 -10.0752 22 1 3.8099 -3.4070 -7.9269 23 6 3.6652 1.2385 -5.0953 24 6 4.2451 3.4100 1.1790 25 6 5.5119 2.7999 0.5737 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3635 0.5138 0.8899 29 1 1.6884 1.8464 0.8899 30 1 1.6885 1.8464 -0.8900 31 1 3.8524 0.5816 -0.8501 32 1 3.8618 0.7090 0.9254 33 1 4.7290 1.9160 -2.5819 34 1 2.8165 3.5242 -3.8984 35 1 4.3588 4.4117 -3.8515 36 1 3.0615 3.7316 -6.2922 37 1 4.8014 3.9629 -6.6642 38 1 4.9335 1.9696 -7.8634 39 1 3.1681 2.1692 -8.0291 40 1 4.4929 0.0987 -10.0671 41 1 4.1415 0.4966 -4.4543 42 1 2.6190 1.3641 -4.8165 43 1 4.1132 4.4883 1.0895 44 1 3.8601 2.9635 2.0957 45 1 5.9596 1.9524 1.0925 46 1 6.2133 3.4770 0.0860 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691146498.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:57 Heat of formation + Delta-G solvation = -64.829603 kcal Electronic energy + Delta-G solvation = -24494.552887 eV Core-core repulsion = 20998.536835 eV Total energy + Delta-G solvation = -3496.016051 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.31860 -39.47837 -38.86385 -37.64154 -36.04464 -34.30177 -32.06225 -31.60079 -29.97001 -27.65900 -27.28757 -25.84996 -24.45349 -23.59108 -23.07754 -21.96534 -21.40759 -20.25866 -18.82455 -18.02928 -17.46210 -17.23075 -16.97463 -16.70605 -16.53175 -15.99170 -15.96137 -15.68344 -15.34904 -14.86910 -14.44618 -14.25882 -14.01386 -13.82652 -13.50262 -13.37476 -13.08136 -13.00097 -12.77192 -12.64327 -12.50566 -12.39938 -12.19348 -12.00775 -11.93310 -11.86493 -11.57301 -11.51065 -11.47109 -11.02940 -10.77560 -10.72044 -10.66563 -10.09837 -8.89687 -7.83705 -5.22048 1.45844 1.47504 1.51450 1.56600 2.12921 2.49389 2.54495 2.94955 3.32307 3.58635 3.62283 3.71610 3.84829 3.93391 3.96292 4.00144 4.02148 4.14913 4.28589 4.42355 4.46660 4.48543 4.54105 4.60962 4.67542 4.76481 4.76776 4.80022 4.84746 4.89845 4.99157 5.01044 5.04798 5.06581 5.09759 5.24601 5.34095 5.45004 5.45267 5.62570 5.79973 6.15838 6.21258 6.52224 7.09833 7.19356 7.77584 8.42110 9.24618 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.014880 B = 0.003716 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.224666 B = 7533.360919 C = 8705.987737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.410 6.410 3 C 0.062 3.938 4 C -0.068 4.068 5 C -0.173 4.173 6 C 0.546 3.454 7 O -0.582 6.582 8 N -0.713 5.713 9 C 0.144 3.856 10 C -0.095 4.095 11 H 0.089 0.911 12 C -0.121 4.121 13 C 0.177 3.823 14 N -0.627 5.627 15 C -0.244 4.244 16 H 0.082 0.918 17 C -0.065 4.065 18 N -0.950 5.950 19 Si 0.977 3.023 20 H -0.290 1.290 21 H -0.293 1.293 22 H -0.266 1.266 23 C 0.140 3.860 24 C -0.143 4.143 25 C -0.132 4.132 26 H 0.036 0.964 27 H 0.099 0.901 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.026 0.974 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.412 0.588 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.028 0.972 39 H -0.007 1.007 40 H 0.246 0.754 41 H 0.046 0.954 42 H 0.016 0.984 43 H 0.090 0.910 44 H 0.124 0.876 45 H 0.132 0.868 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.019 4.284 22.361 22.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C -0.014 4.014 4 C -0.106 4.106 5 C -0.176 4.176 6 C 0.333 3.667 7 O -0.462 6.462 8 N -0.364 5.364 9 C 0.020 3.980 10 C -0.115 4.115 11 H 0.107 0.893 12 C -0.160 4.160 13 C 0.052 3.948 14 N -0.354 5.354 15 C -0.373 4.373 16 H 0.099 0.901 17 C -0.258 4.258 18 N -0.598 5.598 19 Si 0.805 3.195 20 H -0.217 1.217 21 H -0.220 1.220 22 H -0.190 1.190 23 C 0.015 3.985 24 C -0.180 4.180 25 C -0.169 4.169 26 H 0.055 0.945 27 H 0.117 0.883 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.045 0.955 31 H 0.095 0.905 32 H 0.122 0.878 33 H 0.248 0.752 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.046 0.954 39 H 0.011 0.989 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.034 0.966 43 H 0.108 0.892 44 H 0.143 0.857 45 H 0.150 0.850 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.238 4.765 22.166 22.674 hybrid contribution -0.448 -0.881 -1.292 1.627 sum -0.685 3.884 20.874 21.243 Atomic orbital electron populations 1.22904 0.79781 1.03839 1.00520 1.87813 1.21221 1.28432 1.95533 1.22505 0.94646 0.84243 1.00012 1.20932 0.92135 0.92476 1.05016 1.21304 1.06368 0.97831 0.92078 1.19997 0.76827 0.84810 0.85023 1.90667 1.45204 1.22396 1.87970 1.45953 1.58398 1.26847 1.05192 1.21162 0.99668 0.95744 0.81391 1.22417 1.00499 0.94883 0.93695 0.89288 1.22705 1.01880 0.97247 0.94182 1.21000 0.97848 0.84329 0.91598 1.44794 1.85183 1.02862 1.02518 1.19464 1.39890 0.84671 0.93229 0.90053 1.25652 1.01775 1.01529 0.96875 1.70185 1.52660 1.32430 1.04573 0.85083 0.76861 0.79555 0.78004 1.21721 1.21980 1.19015 1.21710 0.96584 0.94595 0.85605 1.23109 1.00920 0.99428 0.94576 1.23230 0.88883 1.03948 1.00834 0.94530 0.88296 0.92607 0.92014 0.95518 0.90499 0.87839 0.75203 0.92519 0.90758 0.91161 0.89534 0.95396 0.98904 0.94433 0.93559 0.96576 0.89160 0.85744 0.85004 0.88353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.41 -9.55 10.70 -148.98 -1.59 -11.14 16 3 C 0.06 1.31 5.86 71.98 0.42 1.73 16 4 C -0.07 -1.17 5.44 30.59 0.17 -1.00 16 5 C -0.17 -3.11 1.91 -52.92 -0.10 -3.22 16 6 C 0.55 13.96 6.46 87.66 0.57 14.53 16 7 O -0.58 -19.30 16.51 -3.03 -0.05 -19.35 16 8 N -0.71 -17.36 5.39 -463.04 -2.49 -19.85 16 9 C 0.14 3.96 5.13 86.38 0.44 4.40 16 10 C -0.10 -3.02 3.10 -9.40 -0.03 -3.05 16 11 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 12 C -0.12 -4.32 6.42 31.78 0.20 -4.12 16 13 C 0.18 8.78 5.43 86.73 0.47 9.25 16 14 N -0.63 -32.27 3.39 -691.99 -2.35 -34.62 16 15 C -0.24 -13.73 10.27 84.03 0.86 -12.87 16 16 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 17 C -0.07 -3.74 5.46 84.86 0.46 -3.27 16 18 N -0.95 -57.48 10.41 21.65 0.23 -57.26 16 19 Si 0.98 45.94 29.56 68.60 2.03 47.97 16 20 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 21 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 23 C 0.14 5.53 6.41 86.85 0.56 6.09 16 24 C -0.14 -2.15 9.77 30.62 0.30 -1.85 16 25 C -0.13 -1.68 9.93 30.62 0.30 -1.38 16 26 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.03 0.67 7.59 -2.38 -0.02 0.65 16 31 H 0.08 1.41 7.97 -2.39 -0.02 1.40 16 32 H 0.10 1.35 8.09 -2.39 -0.02 1.33 16 33 H 0.41 8.72 8.17 -92.71 -0.76 7.96 16 34 H 0.06 1.70 8.10 -2.39 -0.02 1.68 16 35 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.07 2.35 8.04 -2.39 -0.02 2.33 16 37 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.03 1.55 6.95 -2.38 -0.02 1.53 16 39 H -0.01 -0.41 7.91 -2.39 -0.02 -0.43 16 40 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 41 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.02 0.66 8.00 -2.39 -0.02 0.64 16 43 H 0.09 1.67 7.85 -2.39 -0.02 1.65 16 44 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -72.52 374.25 1.83 -70.69 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.19 Total: 16.59 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 5.88 Total: 6.97 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -4.62 Total: -111.73 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -1.64 Total: -30.49 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -72.52 1.83 -70.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691146498.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.865 kcal (2) G-P(sol) polarization free energy of solvation -72.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds