Wall clock time and date at job start Tue Mar 31 2020 03:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47006 * 2 1 4 4 C 1.42901 * 113.99639 * 184.29635 * 3 2 1 5 5 H 1.08997 * 109.47669 * 30.16354 * 4 3 2 6 6 C 1.50703 * 109.46723 * 270.16614 * 4 3 2 7 7 O 1.21278 * 120.00160 * 0.02562 * 6 4 3 8 8 N 1.34778 * 119.99961 * 179.97438 * 6 4 3 9 9 C 1.46506 * 119.99877 * 180.02562 * 8 6 4 10 10 C 1.52997 * 109.46772 * 180.02562 * 9 8 6 11 11 H 1.09007 * 112.85309 * 45.34045 * 10 9 8 12 12 C 1.53788 * 113.61199 * 176.53166 * 10 9 8 13 13 C 1.53776 * 87.07843 * 140.06651 * 12 10 9 14 14 H 1.09001 * 113.61553 * 89.12168 * 13 12 10 15 15 N 1.46499 * 113.61253 * 220.01505 * 13 12 10 16 16 C 1.36935 * 120.00046 * 205.00020 * 15 13 12 17 17 H 1.08002 * 120.00309 * 0.02562 * 16 15 13 18 18 C 1.38818 * 120.00028 * 179.97438 * 16 15 13 19 19 N 1.31621 * 120.00192 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99738 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47519 * 89.99644 * 20 18 16 22 22 H 1.48500 * 109.46747 * 209.99431 * 20 18 16 23 23 H 1.48504 * 109.47140 * 329.99300 * 20 18 16 24 24 C 1.53771 * 87.08519 * 334.56739 * 13 12 10 25 25 C 1.52998 * 109.47397 * 150.17228 * 4 3 2 26 26 C 1.53008 * 117.49673 * 3.60807 * 25 4 3 27 27 C 1.53005 * 117.49751 * 294.95351 * 25 4 3 28 28 H 1.08994 * 109.47208 * 59.99762 * 1 2 3 29 29 H 1.09003 * 109.47152 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46812 * 299.99749 * 1 2 3 31 31 H 1.08999 * 109.46812 * 240.00251 * 2 1 3 32 32 H 1.08994 * 109.47208 * 120.00238 * 2 1 3 33 33 H 0.96999 * 120.00153 * 0.02562 * 8 6 4 34 34 H 1.09004 * 109.46706 * 60.00740 * 9 8 6 35 35 H 1.08997 * 109.46870 * 300.00566 * 9 8 6 36 36 H 1.09000 * 113.61353 * 254.61480 * 12 10 9 37 37 H 1.09000 * 113.61321 * 25.43234 * 12 10 9 38 38 H 0.96998 * 119.99896 * 25.00245 * 15 13 12 39 39 H 0.96996 * 120.00121 * 180.02562 * 19 18 16 40 40 H 1.08998 * 113.61734 * 270.88551 * 24 13 12 41 41 H 1.09002 * 113.61769 * 139.97746 * 24 13 12 42 42 H 1.08992 * 115.55232 * 149.27762 * 25 4 3 43 43 H 1.08999 * 117.49729 * 0.02562 * 26 25 4 44 44 H 1.08996 * 117.50014 * 145.02041 * 26 25 4 45 45 H 1.08996 * 117.49679 * 214.98332 * 27 25 4 46 46 H 1.09001 * 117.49510 * 359.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4274 1.4613 -0.0978 5 1 3.8215 0.6178 -0.6646 6 6 4.0276 1.4618 1.2846 7 8 3.3092 1.3728 2.2576 8 7 5.3628 1.5601 1.4395 9 6 5.9463 1.5600 2.7834 10 6 7.4677 1.6822 2.6787 11 1 7.7832 2.4479 1.9699 12 6 8.1734 1.7765 4.0419 13 6 9.2600 0.8606 3.4544 14 1 10.0654 1.4016 2.9577 15 7 9.7480 -0.1498 4.3963 16 6 11.0020 -0.6785 4.2443 17 1 11.6314 -0.3504 3.4304 18 6 11.4646 -1.6356 5.1371 19 7 12.6701 -2.1434 4.9914 20 14 10.3762 -2.2027 6.5454 21 1 9.5630 -3.3648 6.1056 22 1 11.2245 -2.5998 7.6976 23 1 9.4757 -1.0941 6.9524 24 6 8.1843 0.3348 2.4895 25 6 3.7866 2.7669 -0.8100 26 6 2.6380 3.7043 -1.1884 27 6 3.3682 2.9108 -2.2747 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.9375 1.6309 0.6613 34 1 5.6901 0.6297 3.2905 35 1 5.5524 2.4034 3.3505 36 1 8.5293 2.7786 4.2809 37 1 7.6108 1.3215 4.8572 38 1 9.1828 -0.4443 5.1275 39 1 12.9932 -2.8124 5.6150 40 1 7.6254 -0.5156 2.8800 41 1 8.5491 0.1730 1.4751 42 1 4.7297 3.2226 -0.5089 43 1 1.6266 3.3910 -0.9294 44 1 2.8257 4.7767 -1.1365 45 1 4.0361 3.4614 -2.9371 46 1 2.8375 2.0751 -2.7309 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691440714.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:14 Heat of formation + Delta-G solvation = -29.475595 kcal Electronic energy + Delta-G solvation = -23795.979222 eV Core-core repulsion = 20301.496236 eV Total energy + Delta-G solvation = -3494.482986 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.42750 -38.94339 -37.93513 -36.65464 -34.74570 -33.35232 -31.67253 -30.81580 -29.08692 -26.70087 -25.22933 -23.67806 -23.24944 -22.56949 -21.76020 -21.02115 -20.42774 -19.37170 -17.88033 -17.45257 -17.12662 -16.23483 -15.81887 -15.54878 -15.41646 -14.79868 -14.72803 -14.48926 -14.06069 -13.69529 -13.38803 -13.15045 -12.83260 -12.70064 -12.23875 -12.18454 -12.01164 -11.84552 -11.77648 -11.64754 -11.56459 -11.53080 -10.98440 -10.90896 -10.61172 -10.51242 -10.48719 -10.27782 -10.16225 -9.86850 -9.59381 -9.33875 -9.10830 -8.91592 -7.29615 -5.80814 -3.16389 2.42128 2.85349 3.34975 3.35798 3.39051 3.43802 3.51759 4.23757 4.44015 4.52940 4.56082 4.71810 4.76372 4.83472 4.85542 4.86170 4.93576 5.07050 5.09202 5.12636 5.33980 5.36638 5.38044 5.38858 5.53390 5.62695 5.64985 5.70488 5.74496 5.76604 5.82031 5.83740 5.93644 6.15218 6.15817 6.20151 6.34924 6.46918 6.65462 6.74523 6.94928 7.38440 7.95464 8.10102 8.39042 9.16800 9.89620 10.09393 11.37389 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.023087 B = 0.002673 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.529065 B =10471.219793 C =11060.685241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.354 6.354 4 C 0.106 3.894 5 H 0.090 0.910 6 C 0.492 3.508 7 O -0.528 6.528 8 N -0.723 5.723 9 C 0.132 3.868 10 C -0.127 4.127 11 H 0.091 0.909 12 C -0.146 4.146 13 C 0.172 3.828 14 H 0.084 0.916 15 N -0.737 5.737 16 C -0.248 4.248 17 H 0.091 0.909 18 C 0.005 3.995 19 N -0.933 5.933 20 Si 0.884 3.116 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.276 1.276 24 C -0.161 4.161 25 C -0.163 4.163 26 C -0.158 4.158 27 C -0.170 4.170 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.400 0.600 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.362 0.638 39 H 0.260 0.740 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.119 0.881 43 H 0.108 0.892 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.785 9.875 -15.076 28.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 O -0.271 6.271 4 C 0.044 3.956 5 H 0.108 0.892 6 C 0.277 3.723 7 O -0.403 6.403 8 N -0.377 5.377 9 C 0.009 3.991 10 C -0.146 4.146 11 H 0.109 0.891 12 C -0.185 4.185 13 C 0.061 3.939 14 H 0.102 0.898 15 N -0.377 5.377 16 C -0.378 4.378 17 H 0.109 0.891 18 C -0.191 4.191 19 N -0.580 5.580 20 Si 0.714 3.286 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.202 4.202 25 C -0.181 4.181 26 C -0.195 4.195 27 C -0.207 4.207 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.235 0.765 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.196 0.804 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.137 0.863 43 H 0.127 0.873 44 H 0.112 0.888 45 H 0.116 0.884 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -22.179 9.880 -14.389 28.223 hybrid contribution -0.155 -0.768 0.731 1.071 sum -22.334 9.112 -13.658 27.720 Atomic orbital electron populations 1.21708 0.93411 1.02321 1.03111 1.22608 0.95937 0.83444 1.00293 1.87968 1.18179 1.26757 1.94221 1.21377 0.83354 0.98453 0.92427 0.89232 1.21223 0.82528 0.76638 0.91960 1.90713 1.60369 1.48305 1.40962 1.46084 1.06833 1.74796 1.09939 1.21423 0.92571 1.02054 0.83080 1.22642 0.92137 1.00011 0.99809 0.89069 1.23470 0.98574 1.00880 0.95598 1.21499 0.92373 0.89517 0.90539 0.89804 1.42766 1.16611 1.46585 1.31721 1.19137 0.90422 1.17102 1.11174 0.89136 1.24700 0.96374 0.99174 0.98873 1.69701 1.17020 1.32210 1.39102 0.86556 0.80197 0.78742 0.83087 1.21059 1.21672 1.20253 1.23911 0.99688 0.95330 1.01250 1.22290 1.00824 0.96974 0.98037 1.22896 0.97843 0.96962 1.01758 1.22993 1.03741 1.03411 0.90510 0.91996 0.91036 0.91593 0.93382 0.92752 0.76534 0.91406 0.91710 0.91621 0.90352 0.80443 0.93012 0.90490 0.92269 0.86277 0.87346 0.88792 0.88370 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.05 0.49 6.47 37.16 0.24 0.73 16 3 O -0.35 -3.85 7.89 -55.14 -0.44 -4.28 16 4 C 0.11 1.01 2.87 -27.88 -0.08 0.93 16 5 H 0.09 0.69 7.73 -51.93 -0.40 0.28 16 6 C 0.49 6.12 7.17 -10.98 -0.08 6.04 16 7 O -0.53 -8.89 16.47 -14.35 -0.24 -9.12 16 8 N -0.72 -7.65 5.30 -60.29 -0.32 -7.97 16 9 C 0.13 1.62 5.50 -4.04 -0.02 1.60 16 10 C -0.13 -1.55 3.75 -89.81 -0.34 -1.88 16 11 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 12 C -0.15 -2.13 7.39 -25.92 -0.19 -2.32 16 13 C 0.17 3.12 4.48 -67.13 -0.30 2.82 16 14 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 15 N -0.74 -17.13 5.20 -52.64 -0.27 -17.41 16 16 C -0.25 -6.92 10.45 -15.06 -0.16 -7.08 16 17 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 18 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 19 N -0.93 -29.15 13.97 55.49 0.78 -28.37 16 20 Si 0.88 22.08 27.74 -169.99 -4.71 17.37 16 21 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 24 C -0.16 -2.45 7.43 -25.92 -0.19 -2.64 16 25 C -0.16 -1.27 5.61 -90.61 -0.51 -1.78 16 26 C -0.16 -1.23 9.87 -26.69 -0.26 -1.49 16 27 C -0.17 -1.08 10.24 -26.69 -0.27 -1.36 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.35 7.99 -51.93 -0.41 -0.07 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.40 3.18 8.15 -40.82 -0.33 2.84 16 34 H 0.07 0.95 7.88 -51.93 -0.41 0.54 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 1.19 8.08 -51.93 -0.42 0.77 16 38 H 0.36 8.35 5.79 -40.82 -0.24 8.11 16 39 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 40 H 0.08 1.27 7.92 -51.93 -0.41 0.86 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.12 0.82 7.64 -51.93 -0.40 0.42 16 43 H 0.11 0.98 7.02 -51.93 -0.36 0.61 16 44 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 376.55 15.07 5.67 5.67 Total: -1.00 -33.78 376.55 -9.46 -43.24 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -8.05 Total: 8.01 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -1.88 Total: -7.13 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.18 Total: -53.75 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.67 Total: -13.40 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.71 Total: 17.37 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.78 -9.46 -43.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691440714.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.764 kcal (2) G-P(sol) polarization free energy of solvation -33.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds