Wall clock time and date at job start Tue Mar 31 2020 03:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47006 * 2 1 4 4 C 1.42901 * 113.99639 * 184.29635 * 3 2 1 5 5 H 1.08997 * 109.47669 * 30.16354 * 4 3 2 6 6 C 1.50703 * 109.46723 * 270.16614 * 4 3 2 7 7 O 1.21278 * 120.00160 * 0.02562 * 6 4 3 8 8 N 1.34778 * 119.99961 * 179.97438 * 6 4 3 9 9 C 1.46506 * 119.99877 * 180.02562 * 8 6 4 10 10 C 1.52997 * 109.46772 * 180.02562 * 9 8 6 11 11 H 1.09007 * 112.85309 * 45.34045 * 10 9 8 12 12 C 1.53788 * 113.61199 * 176.53166 * 10 9 8 13 13 C 1.53776 * 87.07843 * 140.06651 * 12 10 9 14 14 H 1.09001 * 113.61553 * 89.12168 * 13 12 10 15 15 N 1.46499 * 113.61253 * 220.01505 * 13 12 10 16 16 C 1.36935 * 120.00046 * 205.00020 * 15 13 12 17 17 H 1.08002 * 120.00309 * 0.02562 * 16 15 13 18 18 C 1.38818 * 120.00028 * 179.97438 * 16 15 13 19 19 N 1.31621 * 120.00192 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99738 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47519 * 89.99644 * 20 18 16 22 22 H 1.48500 * 109.46747 * 209.99431 * 20 18 16 23 23 H 1.48504 * 109.47140 * 329.99300 * 20 18 16 24 24 C 1.53771 * 87.08519 * 334.56739 * 13 12 10 25 25 C 1.52998 * 109.47397 * 150.17228 * 4 3 2 26 26 C 1.53008 * 117.49673 * 3.60807 * 25 4 3 27 27 C 1.53005 * 117.49751 * 294.95351 * 25 4 3 28 28 H 1.08994 * 109.47208 * 59.99762 * 1 2 3 29 29 H 1.09003 * 109.47152 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46812 * 299.99749 * 1 2 3 31 31 H 1.08999 * 109.46812 * 240.00251 * 2 1 3 32 32 H 1.08994 * 109.47208 * 120.00238 * 2 1 3 33 33 H 0.96999 * 120.00153 * 0.02562 * 8 6 4 34 34 H 1.09004 * 109.46706 * 60.00740 * 9 8 6 35 35 H 1.08997 * 109.46870 * 300.00566 * 9 8 6 36 36 H 1.09000 * 113.61353 * 254.61480 * 12 10 9 37 37 H 1.09000 * 113.61321 * 25.43234 * 12 10 9 38 38 H 0.96998 * 119.99896 * 25.00245 * 15 13 12 39 39 H 0.96996 * 120.00121 * 180.02562 * 19 18 16 40 40 H 1.08998 * 113.61734 * 270.88551 * 24 13 12 41 41 H 1.09002 * 113.61769 * 139.97746 * 24 13 12 42 42 H 1.08992 * 115.55232 * 149.27762 * 25 4 3 43 43 H 1.08999 * 117.49729 * 0.02562 * 26 25 4 44 44 H 1.08996 * 117.50014 * 145.02041 * 26 25 4 45 45 H 1.08996 * 117.49679 * 214.98332 * 27 25 4 46 46 H 1.09001 * 117.49510 * 359.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4274 1.4613 -0.0978 5 1 3.8215 0.6178 -0.6646 6 6 4.0276 1.4618 1.2846 7 8 3.3092 1.3728 2.2576 8 7 5.3628 1.5601 1.4395 9 6 5.9463 1.5600 2.7834 10 6 7.4677 1.6822 2.6787 11 1 7.7832 2.4479 1.9699 12 6 8.1734 1.7765 4.0419 13 6 9.2600 0.8606 3.4544 14 1 10.0654 1.4016 2.9577 15 7 9.7480 -0.1498 4.3963 16 6 11.0020 -0.6785 4.2443 17 1 11.6314 -0.3504 3.4304 18 6 11.4646 -1.6356 5.1371 19 7 12.6701 -2.1434 4.9914 20 14 10.3762 -2.2027 6.5454 21 1 9.5630 -3.3648 6.1056 22 1 11.2245 -2.5998 7.6976 23 1 9.4757 -1.0941 6.9524 24 6 8.1843 0.3348 2.4895 25 6 3.7866 2.7669 -0.8100 26 6 2.6380 3.7043 -1.1884 27 6 3.3682 2.9108 -2.2747 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.9375 1.6309 0.6613 34 1 5.6901 0.6297 3.2905 35 1 5.5524 2.4034 3.3505 36 1 8.5293 2.7786 4.2809 37 1 7.6108 1.3215 4.8572 38 1 9.1828 -0.4443 5.1275 39 1 12.9932 -2.8124 5.6150 40 1 7.6254 -0.5156 2.8800 41 1 8.5491 0.1730 1.4751 42 1 4.7297 3.2226 -0.5089 43 1 1.6266 3.3910 -0.9294 44 1 2.8257 4.7767 -1.1365 45 1 4.0361 3.4614 -2.9371 46 1 2.8375 2.0751 -2.7309 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691440714.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:13 Heat of formation + Delta-G solvation = -51.494398 kcal Electronic energy + Delta-G solvation = -23796.934029 eV Core-core repulsion = 20301.496236 eV Total energy + Delta-G solvation = -3495.437793 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.32908 -40.11244 -38.86008 -37.28456 -36.09298 -35.01519 -32.80784 -32.29547 -30.07774 -27.77516 -26.47596 -25.46378 -23.91927 -23.13323 -22.60487 -22.34454 -21.30434 -20.72691 -19.38357 -18.73112 -17.94732 -17.08634 -16.84428 -16.62279 -16.27373 -16.17420 -15.97795 -15.50428 -15.37963 -14.75884 -14.62068 -14.37498 -14.00378 -13.88199 -13.42765 -13.26458 -13.19191 -13.04730 -12.90091 -12.70592 -12.39297 -12.35115 -12.17332 -12.16026 -11.94891 -11.79079 -11.65086 -11.49747 -11.26798 -11.11991 -11.07439 -10.87363 -10.22535 -10.10096 -9.27241 -8.03448 -5.35603 1.36784 1.38855 1.46240 1.50328 2.00891 2.46999 2.62526 2.94788 3.27040 3.54372 3.58312 3.69618 3.76699 3.88670 3.92553 4.08697 4.11535 4.16663 4.24166 4.27108 4.29128 4.37683 4.44035 4.49243 4.53848 4.75474 4.79280 4.87412 4.94664 4.96733 4.99580 5.02319 5.03104 5.21454 5.22039 5.24081 5.32323 5.37397 5.42575 5.65341 5.77893 6.02942 6.22717 6.54210 7.07497 7.20467 7.86035 8.03352 9.18101 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.023087 B = 0.002673 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.529065 B =10471.219793 C =11060.685241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 O -0.370 6.370 4 C 0.107 3.893 5 H 0.113 0.887 6 C 0.488 3.512 7 O -0.579 6.579 8 N -0.709 5.709 9 C 0.137 3.863 10 C -0.096 4.096 11 H 0.122 0.878 12 C -0.138 4.138 13 C 0.146 3.854 14 H 0.080 0.920 15 N -0.745 5.745 16 C -0.230 4.230 17 H 0.061 0.939 18 C -0.066 4.066 19 N -0.984 5.984 20 Si 0.952 3.048 21 H -0.281 1.281 22 H -0.296 1.296 23 H -0.253 1.253 24 C -0.154 4.154 25 C -0.169 4.169 26 C -0.172 4.172 27 C -0.150 4.150 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.033 0.967 33 H 0.417 0.583 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.364 0.636 39 H 0.257 0.743 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.131 0.869 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.116 0.884 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.381 11.017 -16.481 30.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.028 4.028 3 O -0.288 6.288 4 C 0.045 3.955 5 H 0.130 0.870 6 C 0.275 3.725 7 O -0.458 6.458 8 N -0.363 5.363 9 C 0.013 3.987 10 C -0.115 4.115 11 H 0.140 0.860 12 C -0.177 4.177 13 C 0.037 3.963 14 H 0.098 0.902 15 N -0.386 5.386 16 C -0.361 4.361 17 H 0.079 0.921 18 C -0.257 4.257 19 N -0.635 5.635 20 Si 0.779 3.221 21 H -0.208 1.208 22 H -0.223 1.223 23 H -0.178 1.178 24 C -0.195 4.195 25 C -0.187 4.187 26 C -0.209 4.209 27 C -0.187 4.187 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.254 0.746 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.197 0.803 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.149 0.851 43 H 0.110 0.890 44 H 0.120 0.880 45 H 0.134 0.866 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -23.806 11.075 -15.852 30.670 hybrid contribution 0.350 -1.061 1.070 1.547 sum -23.456 10.014 -14.781 29.478 Atomic orbital electron populations 1.21715 0.92469 1.03350 1.02713 1.22739 0.96845 0.82914 1.00301 1.87969 1.19002 1.27692 1.94153 1.21518 0.82757 1.00371 0.90814 0.87001 1.21845 0.82608 0.75390 0.92655 1.90691 1.61575 1.50753 1.42801 1.45944 1.06638 1.73779 1.09948 1.21238 0.92475 1.01092 0.83862 1.22472 0.91566 0.98672 0.98782 0.86011 1.23367 0.97025 1.00627 0.96688 1.21935 0.93556 0.89674 0.91126 0.90241 1.42815 1.15053 1.47740 1.32982 1.19139 0.91607 1.15963 1.09404 0.92118 1.25492 0.97902 1.00156 1.02174 1.69875 1.19321 1.33634 1.40644 0.85454 0.78459 0.78781 0.79359 1.20753 1.22318 1.17771 1.23732 0.98519 0.96523 1.00688 1.22346 1.01163 0.96105 0.99124 1.22909 0.97135 0.97577 1.03255 1.23063 1.02931 1.02909 0.89782 0.91100 0.89319 0.93219 0.91089 0.94891 0.74614 0.93321 0.91811 0.90001 0.90765 0.80257 0.93411 0.91821 0.91283 0.85088 0.89048 0.88000 0.86592 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 10.28 71.98 0.74 -1.34 16 2 C 0.05 0.84 6.47 71.98 0.47 1.31 16 3 O -0.37 -7.72 7.89 -129.94 -1.03 -8.75 16 4 C 0.11 1.84 2.87 29.85 0.09 1.92 16 5 H 0.11 1.40 7.73 -2.39 -0.02 1.38 16 6 C 0.49 11.50 7.17 87.66 0.63 12.13 16 7 O -0.58 -19.47 16.47 16.01 0.26 -19.21 16 8 N -0.71 -13.28 5.30 -463.05 -2.46 -15.73 16 9 C 0.14 3.07 5.50 86.38 0.48 3.55 16 10 C -0.10 -2.04 3.75 -10.27 -0.04 -2.07 16 11 H 0.12 1.95 8.14 -2.38 -0.02 1.94 16 12 C -0.14 -3.67 7.39 31.12 0.23 -3.44 16 13 C 0.15 5.07 4.48 45.51 0.20 5.28 16 14 H 0.08 2.82 8.10 -2.39 -0.02 2.80 16 15 N -0.74 -34.05 5.20 -320.46 -1.67 -35.72 16 16 C -0.23 -12.96 10.45 84.04 0.88 -12.08 16 17 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 18 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 19 N -0.98 -63.13 13.97 21.65 0.30 -62.82 16 20 Si 0.95 45.87 27.74 68.60 1.90 47.78 16 21 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 23 H -0.25 -11.05 6.52 99.48 0.65 -10.41 16 24 C -0.15 -4.37 7.43 31.12 0.23 -4.13 16 25 C -0.17 -2.20 5.61 -10.79 -0.06 -2.26 16 26 C -0.17 -2.37 9.87 30.62 0.30 -2.07 16 27 C -0.15 -1.46 10.24 30.62 0.31 -1.15 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 29 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.88 7.99 -2.39 -0.02 0.87 16 32 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.42 5.12 8.15 -92.71 -0.76 4.36 16 34 H 0.05 1.31 7.88 -2.39 -0.02 1.29 16 35 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.07 2.08 8.08 -2.39 -0.02 2.06 16 38 H 0.36 16.24 5.79 -92.71 -0.54 15.70 16 39 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 40 H 0.06 2.01 7.92 -2.39 -0.02 1.99 16 41 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.13 1.36 7.64 -2.39 -0.02 1.34 16 43 H 0.09 1.59 7.02 -2.39 -0.02 1.57 16 44 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -75.61 376.55 1.86 -73.75 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: -0.39 Total: 28.48 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 4.92 Total: -7.78 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -3.82 Total: -114.27 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.76 Total: -27.96 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.90 Total: 47.78 kcal Total: -75.61 1.86 -73.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691440714.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.260 kcal (2) G-P(sol) polarization free energy of solvation -75.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds