Wall clock time and date at job start Tue Mar 31 2020 03:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45203 * 109.46929 * 2 1 4 4 C 1.34863 * 117.00090 * 179.97438 * 3 2 1 5 5 O 1.21605 * 119.99866 * 359.97438 * 4 3 2 6 6 C 1.46654 * 120.00240 * 179.97438 * 4 3 2 7 7 C 1.39303 * 123.16418 * 90.23952 * 6 4 3 8 8 C 1.50698 * 122.43433 * 0.02685 * 7 6 4 9 9 C 1.33368 * 115.14313 * 180.29993 * 7 6 4 10 10 C 1.50697 * 124.72724 * 179.74997 * 9 7 6 11 11 S 1.75704 * 110.54319 * 359.72734 * 9 7 6 12 12 C 1.38360 * 123.16939 * 270.02628 * 6 4 3 13 13 N 1.37375 * 125.37848 * 359.97438 * 12 6 4 14 14 C 1.34777 * 120.00167 * 179.72304 * 13 12 6 15 15 O 1.21879 * 120.00116 * 359.97438 * 14 13 12 16 16 C 1.41045 * 119.99762 * 179.97438 * 14 13 12 17 17 H 1.08000 * 119.99670 * 359.97438 * 16 14 13 18 18 C 1.40154 * 120.00001 * 179.97438 * 16 14 13 19 19 N 1.30633 * 119.99851 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00319 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47146 * 89.99540 * 20 18 16 22 22 H 1.48497 * 109.47273 * 209.99900 * 20 18 16 23 23 H 1.48503 * 109.46811 * 330.00084 * 20 18 16 24 24 H 1.08997 * 109.46936 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47108 * 300.00214 * 1 2 3 26 26 H 1.09005 * 109.46926 * 60.00366 * 1 2 3 27 27 H 1.08999 * 109.47728 * 240.00116 * 2 1 3 28 28 H 1.08999 * 109.47235 * 119.99327 * 2 1 3 29 29 H 1.08999 * 109.47586 * 270.31714 * 8 7 6 30 30 H 1.08998 * 109.46791 * 30.31641 * 8 7 6 31 31 H 1.09004 * 109.47075 * 150.31212 * 8 7 6 32 32 H 1.09003 * 109.47118 * 179.97438 * 10 9 7 33 33 H 1.08997 * 109.46934 * 300.00063 * 10 9 7 34 34 H 1.08996 * 109.47038 * 60.00003 * 10 9 7 35 35 H 0.97000 * 119.99158 * 359.71996 * 13 12 6 36 36 H 0.96998 * 120.00009 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3510 1.5458 0.0005 5 8 4.0918 0.5814 0.0015 6 6 3.9115 2.9010 0.0000 7 6 4.2067 3.6040 1.1658 8 6 3.9740 3.0271 2.5384 9 6 4.7050 4.8269 0.9793 10 6 5.0935 5.7736 2.0856 11 16 4.8460 5.1802 -0.7361 12 6 4.2009 3.6000 -1.1584 13 7 4.0094 3.1350 -2.4368 14 6 4.3252 3.9128 -3.4912 15 8 4.7803 5.0289 -3.3106 16 6 4.1291 3.4351 -4.8037 17 1 3.7262 2.4459 -4.9637 18 6 4.4569 4.2441 -5.9002 19 7 4.9437 5.4408 -5.7066 20 14 4.1979 3.6113 -7.6386 21 1 2.8323 3.9708 -8.0979 22 1 5.2023 4.2252 -8.5437 23 1 4.3531 2.1345 -7.6559 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8935 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 2.9661 3.2755 2.8709 30 1 4.0875 1.9436 2.5011 31 1 4.7001 3.4446 3.2360 32 1 5.4711 6.7008 1.6545 33 1 4.2213 5.9883 2.7030 34 1 5.8695 5.3162 2.6993 35 1 3.6470 2.2468 -2.5805 36 1 5.1710 6.0006 -6.4655 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000064988.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:37 Heat of formation + Delta-G solvation = -111.290022 kcal Electronic energy + Delta-G solvation = -21722.173116 eV Core-core repulsion = 18297.510409 eV Total energy + Delta-G solvation = -3424.662706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.19881 -38.51725 -37.34680 -36.06575 -34.11989 -32.77103 -31.69951 -30.65870 -28.94962 -27.19432 -25.49835 -23.74696 -22.61675 -20.79457 -20.29286 -18.77092 -17.75959 -17.17260 -16.68211 -16.32202 -15.94111 -15.28075 -14.79443 -14.23060 -14.08134 -13.68312 -13.41541 -13.38526 -13.01290 -12.80730 -12.68685 -12.48624 -12.15388 -11.84301 -11.77657 -11.61443 -11.53416 -11.45190 -11.17398 -11.09498 -10.92008 -10.53492 -10.38003 -10.28144 -9.90379 -9.54476 -9.13326 -8.06723 -7.71150 -6.93224 -6.64445 -5.18846 1.66850 2.03278 2.42937 2.72511 2.90815 2.94655 3.01598 3.05432 3.33376 3.79974 4.15279 4.33423 4.93492 4.98556 5.18219 5.27148 5.39272 5.45391 5.45705 5.62234 5.75783 5.80082 5.80927 5.83188 5.95424 5.97372 6.09327 6.19233 6.23981 6.62402 6.80795 6.99653 7.06197 7.36828 7.60086 7.75585 8.08391 8.52735 8.80084 9.99722 10.23141 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.013268 B = 0.005642 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.841151 B = 4961.670473 C = 6734.828118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.352 6.352 4 C 0.551 3.449 5 O -0.508 6.508 6 C -0.266 4.266 7 C -0.040 4.040 8 C -0.093 4.093 9 C -0.301 4.301 10 C -0.060 4.060 11 S 0.269 5.731 12 C 0.146 3.854 13 N -0.643 5.643 14 C 0.524 3.476 15 O -0.545 6.545 16 C -0.522 4.522 17 H 0.076 0.924 18 C 0.086 3.914 19 N -0.735 5.735 20 Si 0.920 3.080 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.261 1.261 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.400 0.600 36 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.292 -4.560 10.174 12.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.017 4.017 3 O -0.269 6.269 4 C 0.394 3.606 5 O -0.396 6.396 6 C -0.282 4.282 7 C -0.051 4.051 8 C -0.152 4.152 9 C -0.418 4.418 10 C -0.119 4.119 11 S 0.528 5.472 12 C -0.080 4.080 13 N -0.282 5.282 14 C 0.336 3.664 15 O -0.430 6.430 16 C -0.557 4.557 17 H 0.094 0.906 18 C -0.139 4.139 19 N -0.361 5.361 20 Si 0.743 3.257 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.185 1.185 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.235 0.765 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.195 -2.678 9.213 10.471 hybrid contribution -0.865 -2.389 -0.219 2.551 sum -5.060 -5.068 8.994 11.497 Atomic orbital electron populations 1.21789 0.92832 1.02605 1.03603 1.22995 0.95314 0.81061 1.02347 1.86778 1.24766 1.31347 1.83982 1.20610 0.79902 0.89337 0.70791 1.90820 1.60547 1.42910 1.45323 1.17365 1.22240 0.96207 0.92398 1.17780 1.00636 0.93066 0.93617 1.20486 1.01629 1.00070 0.93047 1.24688 1.14906 0.99865 1.02335 1.20015 1.00581 0.96570 0.94721 1.85436 1.61417 1.07816 0.92516 1.22754 0.98056 0.99010 0.88180 1.43652 1.62683 1.19672 1.02162 1.17202 0.80353 0.84842 0.84045 1.90610 1.49930 1.19903 1.82586 1.19862 1.43485 1.02990 0.89328 0.90616 1.25803 0.92586 0.94062 1.01427 1.69972 1.26238 1.06859 1.33041 0.86150 0.79020 0.80125 0.80414 1.19207 1.19911 1.18477 0.90520 0.91587 0.91358 0.91349 0.91536 0.91533 0.92626 0.91500 0.92212 0.91946 0.91953 0.76549 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.29 37.16 0.38 -1.10 16 2 C 0.06 0.74 6.20 37.16 0.23 0.97 16 3 O -0.35 -5.98 10.23 -40.94 -0.42 -6.40 16 4 C 0.55 10.65 5.94 34.13 0.20 10.85 16 5 O -0.51 -10.60 16.90 -19.35 -0.33 -10.93 16 6 C -0.27 -5.38 5.73 -106.06 -0.61 -5.98 16 7 C -0.04 -0.72 5.82 -105.93 -0.62 -1.33 16 8 C -0.09 -1.34 9.54 36.00 0.34 -1.00 16 9 C -0.30 -5.26 6.47 -36.01 -0.23 -5.49 16 10 C -0.06 -0.80 9.40 36.00 0.34 -0.46 16 11 S 0.27 5.61 20.32 -107.50 -2.18 3.43 16 12 C 0.15 3.25 7.19 -15.02 -0.11 3.14 16 13 N -0.64 -15.00 5.31 -13.09 -0.07 -15.07 16 14 C 0.52 14.07 7.50 -15.20 -0.11 13.95 16 15 O -0.55 -15.89 12.33 5.03 0.06 -15.83 16 16 C -0.52 -13.66 9.28 -37.80 -0.35 -14.01 16 17 H 0.08 1.81 7.85 -52.49 -0.41 1.39 16 18 C 0.09 2.20 5.50 -17.34 -0.10 2.10 16 19 N -0.73 -19.96 11.71 55.56 0.65 -19.31 16 20 Si 0.92 18.44 29.56 -169.99 -5.02 13.41 16 21 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 23 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.82 7.48 -51.93 -0.39 0.43 16 31 H 0.07 0.82 7.27 -51.93 -0.38 0.44 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.74 7.89 -51.93 -0.41 0.33 16 35 H 0.40 8.49 8.16 -40.82 -0.33 8.16 16 36 H 0.28 6.78 8.29 -40.82 -0.34 6.44 16 LS Contribution 328.61 15.07 4.95 4.95 Total: -1.00 -31.47 328.61 -7.42 -38.89 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -4.44 Total: 5.23 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -0.63 Total: 1.63 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.58 Total: -34.38 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -0.68 Total: -33.16 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.02 Total: 13.41 kcal Atomic # 16 Polarization: 5.61 SS G_CDS: -2.18 Total: 3.43 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.47 -7.42 -38.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000064988.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.396 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds