Wall clock time and date at job start Tue Mar 31 2020 03:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45203 * 109.46929 * 2 1 4 4 C 1.34863 * 117.00090 * 179.97438 * 3 2 1 5 5 O 1.21605 * 119.99866 * 359.97438 * 4 3 2 6 6 C 1.46654 * 120.00240 * 179.97438 * 4 3 2 7 7 C 1.39303 * 123.16418 * 90.23952 * 6 4 3 8 8 C 1.50698 * 122.43433 * 0.02685 * 7 6 4 9 9 C 1.33368 * 115.14313 * 180.29993 * 7 6 4 10 10 C 1.50697 * 124.72724 * 179.74997 * 9 7 6 11 11 S 1.75704 * 110.54319 * 359.72734 * 9 7 6 12 12 C 1.38360 * 123.16939 * 270.02628 * 6 4 3 13 13 N 1.37375 * 125.37848 * 359.97438 * 12 6 4 14 14 C 1.34777 * 120.00167 * 179.72304 * 13 12 6 15 15 O 1.21879 * 120.00116 * 359.97438 * 14 13 12 16 16 C 1.41045 * 119.99762 * 179.97438 * 14 13 12 17 17 H 1.08000 * 119.99670 * 359.97438 * 16 14 13 18 18 C 1.40154 * 120.00001 * 179.97438 * 16 14 13 19 19 N 1.30633 * 119.99851 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00319 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47146 * 89.99540 * 20 18 16 22 22 H 1.48497 * 109.47273 * 209.99900 * 20 18 16 23 23 H 1.48503 * 109.46811 * 330.00084 * 20 18 16 24 24 H 1.08997 * 109.46936 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47108 * 300.00214 * 1 2 3 26 26 H 1.09005 * 109.46926 * 60.00366 * 1 2 3 27 27 H 1.08999 * 109.47728 * 240.00116 * 2 1 3 28 28 H 1.08999 * 109.47235 * 119.99327 * 2 1 3 29 29 H 1.08999 * 109.47586 * 270.31714 * 8 7 6 30 30 H 1.08998 * 109.46791 * 30.31641 * 8 7 6 31 31 H 1.09004 * 109.47075 * 150.31212 * 8 7 6 32 32 H 1.09003 * 109.47118 * 179.97438 * 10 9 7 33 33 H 1.08997 * 109.46934 * 300.00063 * 10 9 7 34 34 H 1.08996 * 109.47038 * 60.00003 * 10 9 7 35 35 H 0.97000 * 119.99158 * 359.71996 * 13 12 6 36 36 H 0.96998 * 120.00009 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3510 1.5458 0.0005 5 8 4.0918 0.5814 0.0015 6 6 3.9115 2.9010 0.0000 7 6 4.2067 3.6040 1.1658 8 6 3.9740 3.0271 2.5384 9 6 4.7050 4.8269 0.9793 10 6 5.0935 5.7736 2.0856 11 16 4.8460 5.1802 -0.7361 12 6 4.2009 3.6000 -1.1584 13 7 4.0094 3.1350 -2.4368 14 6 4.3252 3.9128 -3.4912 15 8 4.7803 5.0289 -3.3106 16 6 4.1291 3.4351 -4.8037 17 1 3.7262 2.4459 -4.9637 18 6 4.4569 4.2441 -5.9002 19 7 4.9437 5.4408 -5.7066 20 14 4.1979 3.6113 -7.6386 21 1 2.8323 3.9708 -8.0979 22 1 5.2023 4.2252 -8.5437 23 1 4.3531 2.1345 -7.6559 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8935 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 2.9661 3.2755 2.8709 30 1 4.0875 1.9436 2.5011 31 1 4.7001 3.4446 3.2360 32 1 5.4711 6.7008 1.6545 33 1 4.2213 5.9883 2.7030 34 1 5.8695 5.3162 2.6993 35 1 3.6470 2.2468 -2.5805 36 1 5.1710 6.0006 -6.4655 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000064988.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:37 Heat of formation + Delta-G solvation = -130.795297 kcal Electronic energy + Delta-G solvation = -21723.018928 eV Core-core repulsion = 18297.510409 eV Total energy + Delta-G solvation = -3425.508518 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.69314 -40.32711 -38.86776 -37.51746 -35.90178 -34.72582 -32.79821 -32.02935 -30.25912 -29.04217 -26.83785 -25.26632 -23.75893 -22.51450 -21.83326 -20.44209 -19.31137 -18.77695 -18.29577 -17.84663 -17.64880 -16.73000 -16.36569 -15.83404 -15.71088 -14.96972 -14.92024 -14.81372 -14.55734 -14.09602 -13.68821 -13.53161 -13.42924 -13.28541 -13.16054 -13.03069 -12.91603 -12.91172 -12.70420 -12.53413 -12.50784 -12.10296 -11.77922 -11.55884 -11.47770 -11.18261 -10.99127 -10.02967 -9.32666 -8.56789 -8.55019 -7.19975 0.05283 0.43380 0.89792 1.29387 1.35913 1.37337 1.42898 1.53862 1.92356 2.12718 2.26812 2.59685 3.40839 3.86429 3.97977 4.04165 4.06453 4.20892 4.32189 4.48556 4.62012 4.76815 4.80160 4.84792 4.90515 4.94103 4.98365 5.07300 5.07757 5.15850 5.33253 5.40764 5.57462 5.69252 5.77401 5.85657 6.56133 6.61043 6.91872 8.03651 8.35520 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.013268 B = 0.005642 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.841151 B = 4961.670473 C = 6734.828118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 O -0.356 6.356 4 C 0.555 3.445 5 O -0.529 6.529 6 C -0.255 4.255 7 C -0.061 4.061 8 C -0.087 4.087 9 C -0.269 4.269 10 C -0.063 4.063 11 S 0.215 5.785 12 C 0.105 3.895 13 N -0.646 5.646 14 C 0.511 3.489 15 O -0.581 6.581 16 C -0.550 4.550 17 H 0.091 0.909 18 C 0.036 3.964 19 N -0.783 5.783 20 Si 1.004 2.996 21 H -0.257 1.257 22 H -0.266 1.266 23 H -0.251 1.251 24 H 0.107 0.893 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.405 0.595 36 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.326 -5.619 11.457 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.027 4.027 3 O -0.272 6.272 4 C 0.398 3.602 5 O -0.419 6.419 6 C -0.272 4.272 7 C -0.071 4.071 8 C -0.146 4.146 9 C -0.387 4.387 10 C -0.121 4.121 11 S 0.475 5.525 12 C -0.118 4.118 13 N -0.286 5.286 14 C 0.323 3.677 15 O -0.469 6.469 16 C -0.584 4.584 17 H 0.109 0.891 18 C -0.185 4.185 19 N -0.410 5.410 20 Si 0.822 3.178 21 H -0.181 1.181 22 H -0.191 1.191 23 H -0.175 1.175 24 H 0.125 0.875 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.240 0.760 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.253 -3.746 10.539 12.358 hybrid contribution -0.583 -2.095 -0.392 2.209 sum -5.837 -5.841 10.148 13.083 Atomic orbital electron populations 1.21827 0.90086 1.04589 1.03609 1.23426 0.97424 0.79034 1.02830 1.86757 1.23152 1.34030 1.83292 1.20455 0.80657 0.88683 0.70378 1.90806 1.61235 1.43273 1.46593 1.17839 1.20389 0.96365 0.92652 1.18251 1.00891 0.93227 0.94770 1.20545 1.03563 0.99517 0.90982 1.25084 1.12587 1.00301 1.00697 1.20236 1.02392 0.95886 0.93624 1.85476 1.62172 1.08675 0.96158 1.22948 1.00791 0.99878 0.88197 1.43210 1.63529 1.19581 1.02282 1.17512 0.80194 0.84830 0.85167 1.90580 1.51320 1.21229 1.83760 1.20364 1.44180 1.04032 0.89846 0.89125 1.26998 0.91379 0.93868 1.06211 1.70088 1.27381 1.08553 1.35003 0.84910 0.79348 0.79736 0.73802 1.18118 1.19066 1.17465 0.87497 0.90977 0.91934 0.91530 0.90486 0.89684 0.93311 0.88821 0.91632 0.89355 0.89571 0.75982 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 10.29 71.98 0.74 -1.76 16 2 C 0.05 1.14 6.20 71.98 0.45 1.58 16 3 O -0.36 -11.86 10.23 -57.77 -0.59 -12.45 16 4 C 0.56 21.36 5.94 70.02 0.42 21.78 16 5 O -0.53 -22.05 16.90 19.49 0.33 -21.72 16 6 C -0.25 -10.35 5.73 -20.80 -0.12 -10.47 16 7 C -0.06 -2.11 5.82 -20.71 -0.12 -2.23 16 8 C -0.09 -2.23 9.54 71.24 0.68 -1.56 16 9 C -0.27 -9.05 6.47 24.58 0.16 -8.89 16 10 C -0.06 -1.47 9.40 71.23 0.67 -0.80 16 11 S 0.21 9.28 20.32 -56.49 -1.15 8.13 16 12 C 0.11 4.83 7.19 83.85 0.60 5.44 16 13 N -0.65 -31.60 5.31 -313.47 -1.67 -33.27 16 14 C 0.51 28.81 7.50 84.93 0.64 29.44 16 15 O -0.58 -35.79 12.33 -4.92 -0.06 -35.85 16 16 C -0.55 -29.67 9.28 23.42 0.22 -29.45 16 17 H 0.09 4.41 7.85 -2.91 -0.02 4.39 16 18 C 0.04 1.87 5.50 85.34 0.47 2.34 16 19 N -0.78 -44.00 11.71 21.86 0.26 -43.75 16 20 Si 1.00 37.85 29.56 68.60 2.03 39.87 16 21 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 22 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 23 H -0.25 -8.99 7.11 99.48 0.71 -8.28 16 24 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.05 1.32 7.48 -2.39 -0.02 1.30 16 31 H 0.09 1.89 7.27 -2.38 -0.02 1.87 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.09 1.68 7.89 -2.39 -0.02 1.66 16 35 H 0.40 18.05 8.16 -92.71 -0.76 17.29 16 36 H 0.29 14.35 8.29 -92.71 -0.77 13.58 16 Total: -1.00 -71.58 328.61 4.31 -67.27 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 0.36 Total: 26.34 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 4.80 Total: 5.42 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -1.41 Total: -77.02 kcal Atomic # 8 Polarization: -69.69 SS G_CDS: -0.32 Total: -70.02 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.87 kcal Atomic # 16 Polarization: 9.28 SS G_CDS: -1.15 Total: 8.13 kcal Total: -71.58 4.31 -67.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000064988.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.525 kcal (2) G-P(sol) polarization free energy of solvation -71.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds