Wall clock time and date at job start Tue Mar 31 2020 03:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45206 * 109.46720 * 2 1 4 4 C 1.34860 * 116.99755 * 180.02562 * 3 2 1 5 5 O 1.21606 * 120.00031 * 0.02562 * 4 3 2 6 6 C 1.46654 * 119.99634 * 180.02562 * 4 3 2 7 7 C 1.39296 * 123.16983 * 359.97348 * 6 4 3 8 8 C 1.33362 * 115.14627 * 180.02562 * 7 6 4 9 9 C 1.50697 * 124.73004 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.47239 * 89.99580 * 9 8 7 11 11 S 1.75700 * 110.54661 * 0.24073 * 8 7 6 12 12 C 1.38379 * 123.16567 * 180.02562 * 6 4 3 13 13 N 1.37363 * 125.37345 * 359.94306 * 12 6 4 14 14 C 1.34780 * 119.99961 * 180.02562 * 13 12 6 15 15 O 1.21880 * 119.99834 * 0.02562 * 14 13 12 16 16 C 1.41040 * 120.00243 * 180.02562 * 14 13 12 17 17 H 1.08003 * 120.00103 * 359.97438 * 16 14 13 18 18 C 1.40156 * 120.00244 * 180.02562 * 16 14 13 19 19 N 1.30628 * 119.99876 * 359.97438 * 18 16 14 20 20 Si 1.86794 * 120.00408 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47088 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47273 * 119.99471 * 20 18 16 23 23 H 1.48493 * 109.47208 * 239.99853 * 20 18 16 24 24 H 1.09003 * 109.46396 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46958 * 299.99474 * 1 2 3 26 26 H 1.09000 * 109.47161 * 59.99870 * 1 2 3 27 27 H 1.09003 * 109.46958 * 240.00526 * 2 1 3 28 28 H 1.08988 * 109.47528 * 120.00165 * 2 1 3 29 29 H 1.08002 * 122.43087 * 0.02562 * 7 6 4 30 30 H 1.09001 * 109.46613 * 329.99972 * 9 8 7 31 31 H 1.09000 * 109.47374 * 209.99718 * 9 8 7 32 32 H 1.09001 * 109.47002 * 60.00070 * 10 9 8 33 33 H 1.08993 * 109.46955 * 180.02562 * 10 9 8 34 34 H 1.09000 * 109.47050 * 300.00336 * 10 9 8 35 35 H 0.97007 * 120.00444 * 0.02562 * 13 12 6 36 36 H 0.96997 * 120.00228 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3510 1.5458 -0.0005 5 8 4.0918 0.5814 -0.0015 6 6 3.9114 2.9010 0.0000 7 6 3.1251 4.0509 0.0005 8 6 3.8018 5.2001 0.0004 9 6 3.1701 6.5683 0.0004 10 6 2.9563 7.0314 1.4429 11 16 5.5324 4.8967 -0.0073 12 6 5.2711 3.1579 -0.0010 13 7 6.2604 2.2050 -0.0015 14 6 7.5555 2.5782 -0.0020 15 8 7.8488 3.7611 -0.0015 16 6 8.5714 1.5998 -0.0031 17 1 8.3115 0.5515 -0.0031 18 6 9.9182 1.9878 -0.0030 19 7 10.2325 3.2557 -0.0025 20 14 11.2636 0.6920 -0.0037 21 1 10.6489 -0.6598 -0.0036 22 1 12.1056 0.8533 -1.2162 23 1 12.1059 0.8524 1.2087 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8898 29 1 2.0457 4.0144 0.0010 30 1 2.2098 6.5250 -0.5135 31 1 3.8259 7.2712 -0.5135 32 1 3.9166 7.0746 1.9567 33 1 2.4991 8.0208 1.4428 34 1 2.3006 6.3285 1.9567 35 1 6.0270 1.2634 -0.0015 36 1 11.1646 3.5243 -0.0028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000080300.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:56 Heat of formation + Delta-G solvation = -115.528765 kcal Electronic energy + Delta-G solvation = -21409.140481 eV Core-core repulsion = 17984.293969 eV Total energy + Delta-G solvation = -3424.846512 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.06342 -38.48810 -36.98157 -36.03528 -34.12740 -32.90734 -32.33509 -31.49880 -28.04399 -26.79411 -24.66854 -23.42147 -22.47249 -20.82771 -20.36634 -19.37894 -17.50972 -17.38568 -16.36776 -16.24164 -15.94541 -15.16025 -14.85685 -14.28314 -14.16279 -13.83418 -13.57522 -13.54227 -12.96266 -12.86609 -12.74272 -12.55001 -12.01887 -11.86737 -11.53744 -11.52819 -11.48460 -11.14962 -11.01960 -10.92245 -10.86677 -10.47849 -10.34267 -10.11900 -9.86334 -9.67099 -9.14057 -8.05762 -7.85607 -6.98441 -6.64018 -5.17158 1.52006 1.97551 2.37742 2.77210 2.93858 3.03436 3.09009 3.20857 3.69003 3.82391 4.17698 4.42257 4.94575 4.98961 5.14150 5.27591 5.33515 5.38734 5.40329 5.60442 5.64246 5.75377 5.78988 5.91055 6.03420 6.04737 6.14246 6.38756 6.42034 6.69921 6.74462 7.01320 7.05139 7.47482 7.64944 7.81603 8.27300 8.53997 8.85346 10.00181 10.23472 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.013133 B = 0.005200 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.599930 B = 5383.304478 C = 7406.573846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.356 6.356 4 C 0.539 3.461 5 O -0.538 6.538 6 C -0.289 4.289 7 C -0.058 4.058 8 C -0.303 4.303 9 C -0.036 4.036 10 C -0.147 4.147 11 S 0.264 5.736 12 C 0.178 3.822 13 N -0.627 5.627 14 C 0.515 3.485 15 O -0.546 6.546 16 C -0.517 4.517 17 H 0.078 0.922 18 C 0.085 3.915 19 N -0.733 5.733 20 Si 0.920 3.080 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.271 1.271 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.130 0.870 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.417 0.583 36 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.445 0.101 0.384 13.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.274 6.274 4 C 0.387 3.613 5 O -0.430 6.430 6 C -0.304 4.304 7 C -0.086 4.086 8 C -0.419 4.419 9 C -0.075 4.075 10 C -0.205 4.205 11 S 0.521 5.479 12 C -0.053 4.053 13 N -0.268 5.268 14 C 0.328 3.672 15 O -0.432 6.432 16 C -0.551 4.551 17 H 0.097 0.903 18 C -0.140 4.140 19 N -0.360 5.360 20 Si 0.743 3.257 21 H -0.183 1.183 22 H -0.196 1.196 23 H -0.196 1.196 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.148 0.852 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.259 0.741 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.523 1.555 0.375 11.634 hybrid contribution -0.759 -2.388 0.013 2.506 sum -12.283 -0.833 0.388 12.317 Atomic orbital electron populations 1.21785 0.93058 1.02558 1.03343 1.22908 0.94891 0.81021 1.02380 1.86575 1.24416 1.31242 1.85136 1.20369 0.79851 0.89037 0.72001 1.90698 1.59942 1.42756 1.49651 1.17595 0.90232 0.91363 1.31249 1.19384 0.99541 0.89689 1.00007 1.24885 1.01302 0.98364 1.17341 1.19801 0.99456 0.91109 0.97121 1.21797 1.01959 1.00198 0.96521 1.85555 0.97939 0.92456 1.71997 1.23135 0.90379 0.97723 0.94109 1.44172 1.05714 1.09211 1.67715 1.17304 0.79509 0.90597 0.79816 1.90608 1.78476 1.18223 1.55865 1.19958 0.90315 0.94173 1.50689 0.90334 1.25825 0.99733 0.96112 0.92311 1.69982 1.19622 1.16374 1.30036 0.86087 0.79840 0.81050 0.78693 1.18264 1.19603 1.19611 0.90584 0.91619 0.91620 0.91528 0.91533 0.85183 0.91298 0.91637 0.92502 0.92957 0.92666 0.74118 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.29 37.16 0.38 -0.98 16 2 C 0.06 0.80 6.20 37.16 0.23 1.03 16 3 O -0.36 -5.79 9.82 -40.93 -0.40 -6.19 16 4 C 0.54 10.43 7.91 34.13 0.27 10.70 16 5 O -0.54 -11.34 14.28 -19.35 -0.28 -11.61 16 6 C -0.29 -5.76 5.86 -106.06 -0.62 -6.38 16 7 C -0.06 -1.00 9.62 -40.89 -0.39 -1.39 16 8 C -0.30 -5.11 5.72 -36.01 -0.21 -5.31 16 9 C -0.04 -0.47 6.40 -27.88 -0.18 -0.65 16 10 C -0.15 -1.75 9.90 37.16 0.37 -1.39 16 11 S 0.26 5.43 20.33 -107.50 -2.19 3.25 16 12 C 0.18 3.97 7.18 -15.02 -0.11 3.86 16 13 N -0.63 -15.17 5.28 -13.09 -0.07 -15.24 16 14 C 0.52 14.11 7.50 -15.20 -0.11 14.00 16 15 O -0.55 -15.99 12.33 5.03 0.06 -15.93 16 16 C -0.52 -13.84 9.27 -37.80 -0.35 -14.19 16 17 H 0.08 1.96 7.85 -52.48 -0.41 1.55 16 18 C 0.09 2.19 5.50 -17.34 -0.10 2.10 16 19 N -0.73 -20.02 11.71 55.56 0.65 -19.37 16 20 Si 0.92 18.69 29.56 -169.99 -5.02 13.67 16 21 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 22 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 23 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.84 8.14 -51.94 -0.42 0.42 16 29 H 0.13 1.98 7.95 -52.49 -0.42 1.56 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.42 9.72 6.19 -40.82 -0.25 9.47 16 36 H 0.28 6.77 8.29 -40.82 -0.34 6.43 16 LS Contribution 327.66 15.07 4.94 4.94 Total: -1.00 -30.58 327.66 -7.57 -38.14 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -4.44 Total: 6.97 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -0.82 Total: 1.37 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.58 Total: -34.60 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -0.62 Total: -33.73 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Atomic # 16 Polarization: 5.43 SS G_CDS: -2.19 Total: 3.25 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.58 -7.57 -38.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000080300.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.386 kcal (2) G-P(sol) polarization free energy of solvation -30.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds