Wall clock time and date at job start Tue Mar 31 2020 03:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36565 * 120.04887 * 2 1 4 4 C 1.39288 * 120.09636 * 180.25593 * 3 2 1 5 5 N 1.38884 * 119.90638 * 179.76289 * 4 3 2 6 6 C 1.46494 * 120.00354 * 204.72221 * 5 4 3 7 7 C 1.50700 * 109.47118 * 85.00041 * 6 5 4 8 8 H 1.07995 * 119.99998 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00232 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00046 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99528 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46583 * 90.00951 * 11 9 7 13 13 H 1.48501 * 109.46974 * 209.99970 * 11 9 7 14 14 H 1.48492 * 109.47568 * 330.00652 * 11 9 7 15 15 S 1.65610 * 119.99971 * 24.72348 * 5 4 3 16 16 C 1.81399 * 104.44759 * 273.93102 * 15 5 4 17 17 O 1.42102 * 104.27535 * 29.99641 * 15 5 4 18 18 O 1.42095 * 104.27749 * 157.85696 * 15 5 4 19 19 C 1.39339 * 120.19110 * 359.48494 * 4 3 2 20 20 C 1.36530 * 120.09612 * 0.25467 * 19 4 3 21 21 C 1.40089 * 120.04791 * 179.74434 * 2 1 3 22 22 C 1.46754 * 120.09601 * 0.02562 * 21 2 1 23 23 O 1.21311 * 119.99767 * 354.43181 * 22 21 2 24 24 H 1.08994 * 109.47311 * 263.47136 * 1 2 3 25 25 H 1.08998 * 109.47042 * 23.47170 * 1 2 3 26 26 H 1.09004 * 109.47285 * 143.46854 * 1 2 3 27 27 H 1.07995 * 119.94856 * 0.02562 * 3 2 1 28 28 H 1.08999 * 109.47509 * 324.99730 * 6 5 4 29 29 H 1.09003 * 109.47167 * 205.00025 * 6 5 4 30 30 H 0.97002 * 120.00159 * 179.97438 * 10 9 7 31 31 H 1.08995 * 109.47363 * 51.61991 * 16 15 5 32 32 H 1.08994 * 109.47011 * 171.62605 * 16 15 5 33 33 H 1.08997 * 109.46965 * 291.61992 * 16 15 5 34 34 H 1.07998 * 119.95150 * 180.27874 * 19 4 3 35 35 H 1.07992 * 120.04753 * 179.97438 * 20 19 4 36 36 H 1.07994 * 120.00242 * 174.42502 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1909 1.1821 0.0000 4 6 3.5837 1.1833 -0.0054 5 7 4.2752 2.3877 -0.0103 6 6 5.6372 2.4483 -0.5463 7 6 5.5812 2.6403 -2.0400 8 1 4.6265 2.7098 -2.5400 9 6 6.7488 2.7262 -2.7683 10 7 6.6999 2.8943 -4.0717 11 14 8.4001 2.6053 -1.9033 12 1 8.8290 1.1845 -1.8520 13 1 9.4088 3.4002 -2.6490 14 1 8.2752 3.1349 -0.5217 15 16 3.5599 3.7556 0.5897 16 6 2.6234 4.4281 -0.8107 17 8 2.6777 3.2772 1.5957 18 8 4.6499 4.6069 0.9155 19 6 4.2855 -0.0205 0.0000 20 6 3.6098 -1.2069 0.0054 21 6 2.2085 -1.2126 0.0054 22 6 1.4779 -2.4854 0.0105 23 8 0.2691 -2.4904 0.1120 24 1 -0.3633 -0.1168 1.0209 25 1 -0.3633 0.9426 -0.4093 26 1 -0.3634 -0.8258 -0.6117 27 1 1.6508 2.1173 0.0004 28 1 6.1589 1.5188 -0.3188 29 1 6.1695 3.2842 -0.0922 30 1 7.5213 2.9551 -4.5841 31 1 1.9933 3.6466 -1.2353 32 1 1.9983 5.2524 -0.4675 33 1 3.3159 4.7895 -1.5709 34 1 5.3654 -0.0151 0.0004 35 1 4.1544 -2.1394 0.0092 36 1 2.0164 -3.4175 -0.0762 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001625369.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:28 Heat of formation + Delta-G solvation = -65.489302 kcal Electronic energy + Delta-G solvation = -22392.461449 eV Core-core repulsion = 18969.784811 eV Total energy + Delta-G solvation = -3422.676638 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.06022 -38.41759 -36.95528 -35.90601 -35.64566 -32.79236 -32.44122 -30.32309 -29.26843 -27.96929 -26.90001 -23.85392 -22.78997 -21.80877 -20.27633 -18.72111 -17.65656 -17.25479 -17.08249 -16.09639 -15.93055 -15.59543 -15.06012 -14.57074 -14.31544 -14.07495 -13.88181 -13.42584 -13.13835 -13.04660 -12.82865 -12.77096 -12.56838 -12.33542 -12.17784 -11.94192 -11.80011 -11.64129 -11.55927 -11.41996 -10.86204 -10.78327 -10.63253 -10.43083 -9.91202 -9.41097 -9.34187 -8.82356 -8.64208 -7.65541 -6.33133 -4.37350 0.47034 0.91430 1.66608 2.64082 2.76333 3.13089 3.23173 3.25775 3.91996 4.14275 4.19510 4.38438 4.44556 4.74459 4.90491 4.99694 5.00842 5.19951 5.28039 5.35847 5.51309 5.61968 5.74431 5.89778 5.94710 5.98894 6.15737 6.24487 6.34973 6.57740 6.61993 6.72156 6.83915 6.86069 7.25411 7.33503 7.61063 8.17657 8.66085 9.24474 10.78692 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.015161 B = 0.006249 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.401501 B = 4479.343535 C = 5585.732040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.018 3.982 3 C -0.198 4.198 4 C 0.256 3.744 5 N -0.918 5.918 6 C 0.200 3.800 7 C -0.553 4.553 8 H 0.082 0.918 9 C 0.082 3.918 10 N -0.886 5.886 11 Si 0.867 3.133 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.258 1.258 15 S 2.600 3.400 16 C -0.668 4.668 17 O -0.957 6.957 18 O -0.945 6.945 19 C -0.167 4.167 20 C -0.029 4.029 21 C -0.248 4.248 22 C 0.386 3.614 23 O -0.474 6.474 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.090 0.910 27 H 0.123 0.877 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.269 0.731 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.144 0.856 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.957 -4.756 6.691 10.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.017 3.983 3 C -0.220 4.220 4 C 0.155 3.845 5 N -0.738 5.738 6 C 0.078 3.922 7 C -0.592 4.592 8 H 0.100 0.900 9 C -0.123 4.123 10 N -0.523 5.523 11 Si 0.692 3.308 12 H -0.197 1.197 13 H -0.206 1.206 14 H -0.183 1.183 15 S 2.695 3.305 16 C -0.818 4.818 17 O -0.948 6.948 18 O -0.935 6.935 19 C -0.189 4.189 20 C -0.048 4.048 21 C -0.250 4.250 22 C 0.247 3.753 23 O -0.350 6.350 24 H 0.094 0.906 25 H 0.076 0.924 26 H 0.109 0.891 27 H 0.141 0.859 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.147 0.853 32 H 0.142 0.858 33 H 0.162 0.838 34 H 0.155 0.845 35 H 0.149 0.851 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.298 -4.266 7.445 11.264 hybrid contribution 1.075 0.118 -0.614 1.243 sum -6.223 -4.148 6.831 10.129 Atomic orbital electron populations 1.21083 0.90452 1.02816 1.03294 1.19552 0.96149 0.91304 0.91269 1.20535 0.91814 0.99059 1.10584 1.17753 0.90354 0.86548 0.89851 1.55510 1.26120 1.19866 1.72284 1.20024 0.76492 0.99751 0.95909 1.21282 0.95553 1.52909 0.89434 0.90020 1.24802 0.99044 0.93754 0.94671 1.69867 1.28696 1.47972 1.05727 0.86977 0.83990 0.78969 0.80826 1.19670 1.20580 1.18271 1.05186 0.75010 0.73967 0.76288 1.30550 1.15912 1.13185 1.22191 1.93625 1.67498 1.79110 1.54520 1.93600 1.51236 1.66159 1.82530 1.20666 1.00964 0.90638 1.06631 1.20883 0.92585 0.97958 0.93407 1.20484 0.94447 0.95237 1.14854 1.23744 0.88896 0.92289 0.70321 1.90455 1.17594 1.90332 1.36606 0.90611 0.92419 0.89121 0.85874 0.93769 0.91856 0.92122 0.85348 0.85840 0.83758 0.84479 0.85069 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 8.72 36.01 0.31 -1.31 16 2 C 0.02 0.28 5.89 -104.53 -0.62 -0.33 16 3 C -0.20 -3.29 7.90 -39.80 -0.31 -3.60 16 4 C 0.26 4.58 6.02 -83.87 -0.51 4.08 16 5 N -0.92 -17.48 2.89 -59.81 -0.17 -17.65 16 6 C 0.20 4.30 4.21 -5.20 -0.02 4.28 16 7 C -0.55 -13.83 9.92 -34.44 -0.34 -14.17 16 8 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 9 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 10 N -0.89 -24.81 13.96 55.43 0.77 -24.04 16 11 Si 0.87 19.43 27.47 -169.99 -4.67 14.76 16 12 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.26 -5.61 6.54 56.52 0.37 -5.24 16 15 S 2.60 45.21 5.41 -107.50 -0.58 44.63 16 16 C -0.67 -9.26 10.73 101.05 1.08 -8.18 16 17 O -0.96 -17.45 15.48 -57.54 -0.89 -18.35 16 18 O -0.94 -19.15 16.44 -57.54 -0.95 -20.10 16 19 C -0.17 -2.71 9.29 -39.79 -0.37 -3.08 16 20 C -0.03 -0.39 9.74 -39.49 -0.38 -0.77 16 21 C -0.25 -3.46 5.87 -105.05 -0.62 -4.07 16 22 C 0.39 4.59 11.38 34.17 0.39 4.98 16 23 O -0.47 -6.90 14.14 5.53 0.08 -6.82 16 24 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.06 0.69 8.03 -51.93 -0.42 0.27 16 26 H 0.09 1.25 5.85 -51.93 -0.30 0.95 16 27 H 0.12 1.87 4.87 -52.49 -0.26 1.61 16 28 H 0.04 0.90 5.42 -51.93 -0.28 0.62 16 29 H 0.06 1.41 5.83 -51.93 -0.30 1.11 16 30 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.13 1.64 6.82 -51.93 -0.35 1.28 16 32 H 0.12 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.14 2.15 8.14 -51.93 -0.42 1.73 16 34 H 0.14 2.16 6.17 -52.49 -0.32 1.84 16 35 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 36 H 0.10 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 311.56 15.07 4.70 4.70 Total: -1.00 -32.00 311.56 -7.14 -39.13 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -3.94 Total: 3.87 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -1.48 Total: -20.14 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.60 Total: -41.69 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -1.76 Total: -45.26 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.67 Total: 14.76 kcal Atomic # 16 Polarization: 45.21 SS G_CDS: -0.58 Total: 44.63 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.00 -7.14 -39.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001625369.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.358 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds