Wall clock time and date at job start Tue Mar 31 2020 03:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36565 * 120.04887 * 2 1 4 4 C 1.39288 * 120.09636 * 180.25593 * 3 2 1 5 5 N 1.38884 * 119.90638 * 179.76289 * 4 3 2 6 6 C 1.46494 * 120.00354 * 204.72221 * 5 4 3 7 7 C 1.50700 * 109.47118 * 85.00041 * 6 5 4 8 8 H 1.07995 * 119.99998 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00232 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00046 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99528 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46583 * 90.00951 * 11 9 7 13 13 H 1.48501 * 109.46974 * 209.99970 * 11 9 7 14 14 H 1.48492 * 109.47568 * 330.00652 * 11 9 7 15 15 S 1.65610 * 119.99971 * 24.72348 * 5 4 3 16 16 C 1.81399 * 104.44759 * 273.93102 * 15 5 4 17 17 O 1.42102 * 104.27535 * 29.99641 * 15 5 4 18 18 O 1.42095 * 104.27749 * 157.85696 * 15 5 4 19 19 C 1.39339 * 120.19110 * 359.48494 * 4 3 2 20 20 C 1.36530 * 120.09612 * 0.25467 * 19 4 3 21 21 C 1.40089 * 120.04791 * 179.74434 * 2 1 3 22 22 C 1.46754 * 120.09601 * 0.02562 * 21 2 1 23 23 O 1.21311 * 119.99767 * 354.43181 * 22 21 2 24 24 H 1.08994 * 109.47311 * 263.47136 * 1 2 3 25 25 H 1.08998 * 109.47042 * 23.47170 * 1 2 3 26 26 H 1.09004 * 109.47285 * 143.46854 * 1 2 3 27 27 H 1.07995 * 119.94856 * 0.02562 * 3 2 1 28 28 H 1.08999 * 109.47509 * 324.99730 * 6 5 4 29 29 H 1.09003 * 109.47167 * 205.00025 * 6 5 4 30 30 H 0.97002 * 120.00159 * 179.97438 * 10 9 7 31 31 H 1.08995 * 109.47363 * 51.61991 * 16 15 5 32 32 H 1.08994 * 109.47011 * 171.62605 * 16 15 5 33 33 H 1.08997 * 109.46965 * 291.61992 * 16 15 5 34 34 H 1.07998 * 119.95150 * 180.27874 * 19 4 3 35 35 H 1.07992 * 120.04753 * 179.97438 * 20 19 4 36 36 H 1.07994 * 120.00242 * 174.42502 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1909 1.1821 0.0000 4 6 3.5837 1.1833 -0.0054 5 7 4.2752 2.3877 -0.0103 6 6 5.6372 2.4483 -0.5463 7 6 5.5812 2.6403 -2.0400 8 1 4.6265 2.7098 -2.5400 9 6 6.7488 2.7262 -2.7683 10 7 6.6999 2.8943 -4.0717 11 14 8.4001 2.6053 -1.9033 12 1 8.8290 1.1845 -1.8520 13 1 9.4088 3.4002 -2.6490 14 1 8.2752 3.1349 -0.5217 15 16 3.5599 3.7556 0.5897 16 6 2.6234 4.4281 -0.8107 17 8 2.6777 3.2772 1.5957 18 8 4.6499 4.6069 0.9155 19 6 4.2855 -0.0205 0.0000 20 6 3.6098 -1.2069 0.0054 21 6 2.2085 -1.2126 0.0054 22 6 1.4779 -2.4854 0.0105 23 8 0.2691 -2.4904 0.1120 24 1 -0.3633 -0.1168 1.0209 25 1 -0.3633 0.9426 -0.4093 26 1 -0.3634 -0.8258 -0.6117 27 1 1.6508 2.1173 0.0004 28 1 6.1589 1.5188 -0.3188 29 1 6.1695 3.2842 -0.0922 30 1 7.5213 2.9551 -4.5841 31 1 1.9933 3.6466 -1.2353 32 1 1.9983 5.2524 -0.4675 33 1 3.3159 4.7895 -1.5709 34 1 5.3654 -0.0151 0.0004 35 1 4.1544 -2.1394 0.0092 36 1 2.0164 -3.4175 -0.0762 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001625369.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:27 Heat of formation + Delta-G solvation = -87.603218 kcal Electronic energy + Delta-G solvation = -22393.420380 eV Core-core repulsion = 18969.784811 eV Total energy + Delta-G solvation = -3423.635569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.19918 -39.55135 -38.40634 -37.27413 -37.06313 -34.68119 -33.57182 -31.72253 -30.46534 -29.47549 -28.14770 -25.07408 -24.36059 -22.97789 -21.50116 -20.08387 -19.14076 -19.00377 -18.29199 -17.51570 -17.27532 -16.71948 -16.49098 -16.02484 -15.63877 -15.20755 -15.04632 -14.75148 -14.54658 -14.38496 -14.12052 -14.01523 -13.90723 -13.68458 -13.54597 -13.31889 -13.17181 -13.08183 -12.98179 -12.80460 -12.46806 -12.24432 -12.05021 -11.81674 -11.75365 -10.96515 -10.78975 -10.35032 -9.80479 -8.96135 -8.32855 -6.39973 -0.86353 -0.19641 0.49652 1.35551 1.36451 1.44680 1.50248 1.60478 2.32675 2.67300 2.91257 3.00373 3.03718 3.51015 3.54669 3.82411 3.92833 4.02177 4.09769 4.22796 4.46432 4.49465 4.63715 4.76355 4.83086 4.85717 4.86125 4.90544 5.01277 5.21167 5.32112 5.37359 5.52739 5.55374 5.65400 6.06827 6.20909 6.64430 6.67597 7.24840 8.81930 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.015161 B = 0.006249 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.401501 B = 4479.343535 C = 5585.732040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.000 4.000 3 C -0.212 4.212 4 C 0.222 3.778 5 N -0.926 5.926 6 C 0.207 3.793 7 C -0.545 4.545 8 H 0.054 0.946 9 C 0.028 3.972 10 N -0.933 5.933 11 Si 0.923 3.077 12 H -0.255 1.255 13 H -0.283 1.283 14 H -0.248 1.248 15 S 2.600 3.400 16 C -0.652 4.652 17 O -0.969 6.969 18 O -0.980 6.980 19 C -0.188 4.188 20 C -0.016 4.016 21 C -0.251 4.251 22 C 0.394 3.606 23 O -0.500 6.500 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.129 0.871 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.269 0.731 31 H 0.141 0.859 32 H 0.162 0.838 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.176 0.824 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.179 -6.494 7.442 12.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.001 4.001 3 C -0.233 4.233 4 C 0.123 3.877 5 N -0.746 5.746 6 C 0.084 3.916 7 C -0.584 4.584 8 H 0.072 0.928 9 C -0.172 4.172 10 N -0.572 5.572 11 Si 0.746 3.254 12 H -0.180 1.180 13 H -0.209 1.209 14 H -0.172 1.172 15 S 2.699 3.301 16 C -0.805 4.805 17 O -0.960 6.960 18 O -0.971 6.971 19 C -0.210 4.210 20 C -0.034 4.034 21 C -0.253 4.253 22 C 0.257 3.743 23 O -0.377 6.377 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.107 0.893 27 H 0.146 0.854 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.160 0.840 32 H 0.180 0.820 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.194 0.806 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.524 -6.040 8.242 12.690 hybrid contribution 0.975 0.608 -0.867 1.440 sum -6.549 -5.432 7.375 11.260 Atomic orbital electron populations 1.21068 0.89444 1.03355 1.03372 1.19918 0.97137 0.91707 0.91374 1.20699 0.91557 0.99997 1.11072 1.18070 0.91047 0.86642 0.91967 1.55347 1.25445 1.21047 1.72793 1.19746 0.78322 1.00039 0.93517 1.21481 0.94337 1.51339 0.91248 0.92801 1.25596 1.02746 0.93722 0.95158 1.69997 1.29628 1.50242 1.07375 0.86073 0.79552 0.79766 0.80036 1.17956 1.20854 1.17206 1.05053 0.74693 0.73367 0.77019 1.30392 1.15707 1.14725 1.19680 1.93598 1.67256 1.79245 1.55893 1.93548 1.52979 1.66834 1.83744 1.20913 1.01242 0.91299 1.07558 1.21308 0.92485 0.98683 0.90970 1.20979 0.95049 0.96019 1.13286 1.24351 0.88433 0.92879 0.68665 1.90462 1.19014 1.90567 1.37650 0.90510 0.91383 0.89293 0.85373 0.92278 0.92611 0.92132 0.84010 0.81975 0.84664 0.84515 0.80630 0.83285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.00 8.72 71.24 0.62 -2.38 16 2 C 0.00 -0.01 5.89 -19.81 -0.12 -0.13 16 3 C -0.21 -6.93 7.90 22.13 0.17 -6.76 16 4 C 0.22 7.89 6.02 38.54 0.23 8.12 16 5 N -0.93 -35.46 2.89 -343.13 -0.99 -36.45 16 6 C 0.21 8.91 4.21 85.63 0.36 9.27 16 7 C -0.55 -27.68 9.92 25.60 0.25 -27.42 16 8 H 0.05 2.96 8.06 -2.91 -0.02 2.94 16 9 C 0.03 1.48 5.47 84.66 0.46 1.94 16 10 N -0.93 -53.35 13.96 21.45 0.30 -53.05 16 11 Si 0.92 39.74 27.47 68.60 1.88 41.62 16 12 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 13 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 14 H -0.25 -10.20 6.54 99.48 0.65 -9.55 16 15 S 2.60 90.64 5.41 -56.49 -0.31 90.34 16 16 C -0.65 -17.47 10.73 113.37 1.22 -16.25 16 17 O -0.97 -35.29 15.48 -127.65 -1.98 -37.27 16 18 O -0.98 -40.32 16.44 -127.65 -2.10 -42.42 16 19 C -0.19 -5.88 9.29 22.14 0.21 -5.68 16 20 C -0.02 -0.38 9.74 22.33 0.22 -0.16 16 21 C -0.25 -6.35 5.87 -20.14 -0.12 -6.47 16 22 C 0.39 7.92 11.38 70.05 0.80 8.72 16 23 O -0.50 -13.24 14.14 -3.12 -0.04 -13.28 16 24 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.07 1.56 8.03 -2.39 -0.02 1.54 16 26 H 0.09 2.33 5.85 -2.38 -0.01 2.32 16 27 H 0.13 3.85 4.87 -2.91 -0.01 3.84 16 28 H 0.06 2.36 5.42 -2.39 -0.01 2.35 16 29 H 0.06 2.50 5.83 -2.39 -0.01 2.49 16 30 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.14 3.47 6.82 -2.39 -0.02 3.45 16 32 H 0.16 3.06 8.14 -2.39 -0.02 3.04 16 33 H 0.13 4.01 8.14 -2.39 -0.02 3.99 16 34 H 0.14 4.16 6.17 -2.91 -0.02 4.14 16 35 H 0.18 2.50 8.06 -2.91 -0.02 2.47 16 36 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -70.78 311.56 2.13 -68.65 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 1.06 Total: 19.04 kcal Atomic # 6 Polarization: -41.50 SS G_CDS: 4.31 Total: -37.19 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -0.69 Total: -89.50 kcal Atomic # 8 Polarization: -88.85 SS G_CDS: -4.12 Total: -92.97 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 1.88 Total: 41.62 kcal Atomic # 16 Polarization: 90.64 SS G_CDS: -0.31 Total: 90.34 kcal Total: -70.78 2.13 -68.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001625369.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.953 kcal (2) G-P(sol) polarization free energy of solvation -70.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds