Wall clock time and date at job start Tue Mar 31 2020 03:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47006 * 2 1 4 4 C 1.50701 * 109.46954 * 179.97438 * 3 2 1 5 5 C 1.33364 * 124.72341 * 90.00223 * 4 3 2 6 6 C 1.39301 * 115.14412 * 179.97438 * 5 4 3 7 7 C 1.46653 * 123.16955 * 179.97438 * 6 5 4 8 8 O 1.21609 * 120.00130 * 180.02562 * 7 6 5 9 9 O 1.34863 * 119.99961 * 0.02884 * 7 6 5 10 10 C 1.45197 * 116.99930 * 179.97438 * 9 7 6 11 11 C 1.38372 * 113.66471 * 359.97438 * 6 5 4 12 12 N 1.37367 * 125.37924 * 180.02562 * 11 6 5 13 13 C 1.34773 * 120.00148 * 179.97438 * 12 11 6 14 14 O 1.21878 * 120.00290 * 359.97438 * 13 12 11 15 15 C 1.41041 * 119.99814 * 179.97438 * 13 12 11 16 16 H 1.07997 * 120.00276 * 0.02562 * 15 13 12 17 17 C 1.40162 * 119.99963 * 180.02562 * 15 13 12 18 18 N 1.30631 * 119.99745 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 120.00139 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47212 * 89.99751 * 19 17 15 21 21 H 1.48503 * 109.46959 * 209.99584 * 19 17 15 22 22 H 1.48503 * 109.46641 * 329.99409 * 19 17 15 23 23 S 1.75694 * 124.72829 * 269.97407 * 4 3 2 24 24 H 1.09005 * 109.46975 * 300.00135 * 1 2 3 25 25 H 1.08999 * 109.47200 * 60.00313 * 1 2 3 26 26 H 1.08999 * 109.46801 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47303 * 239.99483 * 2 1 3 28 28 H 1.09004 * 109.46789 * 119.99457 * 2 1 3 29 29 H 1.08995 * 109.47511 * 59.99610 * 3 2 1 30 30 H 1.08999 * 109.46885 * 299.99879 * 3 2 1 31 31 H 1.08005 * 122.42768 * 359.70213 * 5 4 3 32 32 H 1.08998 * 109.47366 * 299.99337 * 10 9 7 33 33 H 1.08994 * 109.47492 * 59.99706 * 10 9 7 34 34 H 1.09001 * 109.47024 * 179.97438 * 10 9 7 35 35 H 0.96999 * 119.99496 * 359.97438 * 12 11 6 36 36 H 0.97001 * 119.99356 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3071 1.4424 -1.0952 6 6 5.6806 1.4430 -0.8628 7 6 6.6765 1.4424 -1.9393 8 8 7.8625 1.4425 -1.6705 9 8 6.2771 1.4418 -3.2274 10 6 7.3176 1.4418 -4.2402 11 6 6.0168 1.4441 0.4795 12 7 7.2965 1.4454 0.9789 13 6 7.4999 1.4470 2.3111 14 8 6.5486 1.4478 3.0730 15 6 8.8139 1.4478 2.8238 16 1 9.6569 1.4475 2.1488 17 6 9.0255 1.4489 4.2094 18 7 8.0058 1.4497 5.0258 19 14 10.7658 1.4506 4.8884 20 1 11.2259 2.8511 5.0673 21 1 10.7866 0.7516 6.1985 22 1 11.6681 0.7504 3.9393 23 16 4.5473 1.4434 1.4450 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 3.8882 1.4375 -2.0906 32 1 7.9360 2.3321 -4.1258 33 1 7.9367 0.5522 -4.1251 34 1 6.8611 1.4409 -5.2300 35 1 8.0536 1.4451 0.3726 36 1 8.1523 1.4509 5.9847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006757553.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:59 Heat of formation + Delta-G solvation = -134.544696 kcal Electronic energy + Delta-G solvation = -21351.991237 eV Core-core repulsion = 17926.320133 eV Total energy + Delta-G solvation = -3425.671105 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.54458 -40.28303 -38.52481 -37.39350 -36.11112 -35.04295 -34.44668 -30.85487 -29.43143 -28.57270 -26.56523 -25.45282 -22.83921 -22.62627 -21.70653 -20.94391 -19.29825 -18.88542 -18.01295 -17.82344 -17.32698 -16.77171 -16.47959 -15.89239 -15.72448 -15.36483 -15.12468 -14.64863 -14.49946 -14.33693 -14.14861 -13.65168 -13.34749 -13.24664 -12.98179 -12.91389 -12.80719 -12.77140 -12.20447 -12.10095 -12.08258 -11.79336 -11.77446 -11.45567 -11.38214 -11.26290 -11.02057 -10.03446 -9.47523 -8.63443 -8.56339 -7.21219 -0.14044 0.37640 0.93778 1.29940 1.34919 1.36679 1.53496 1.95248 2.08437 2.13329 2.33665 2.65546 3.39331 3.84254 4.13784 4.18852 4.24995 4.32318 4.35906 4.36086 4.66705 4.75063 4.77240 4.94450 4.98312 5.06432 5.09145 5.22192 5.23132 5.31321 5.40897 5.54303 5.63810 5.68020 5.76108 5.89111 6.54883 6.77551 6.94562 8.01749 8.33913 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.013074 B = 0.005160 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.092470 B = 5425.100440 C = 7432.277451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C -0.032 4.032 4 C -0.266 4.266 5 C -0.066 4.066 6 C -0.275 4.275 7 C 0.537 3.463 8 O -0.558 6.558 9 O -0.352 6.352 10 C 0.030 3.970 11 C 0.134 3.866 12 N -0.635 5.635 13 C 0.504 3.496 14 O -0.579 6.579 15 C -0.549 4.549 16 H 0.088 0.912 17 C 0.037 3.963 18 N -0.780 5.780 19 Si 1.004 2.996 20 H -0.257 1.257 21 H -0.263 1.263 22 H -0.252 1.252 23 S 0.219 5.781 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.164 0.836 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.139 0.861 35 H 0.417 0.583 36 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.877 -0.707 -12.620 14.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C -0.072 4.072 4 C -0.383 4.383 5 C -0.094 4.094 6 C -0.292 4.292 7 C 0.385 3.615 8 O -0.452 6.452 9 O -0.268 6.268 10 C -0.064 4.064 11 C -0.093 4.093 12 N -0.278 5.278 13 C 0.316 3.684 14 O -0.468 6.468 15 C -0.583 4.583 16 H 0.106 0.894 17 C -0.184 4.184 18 N -0.407 5.407 19 Si 0.822 3.178 20 H -0.182 1.182 21 H -0.187 1.187 22 H -0.176 1.176 23 S 0.477 5.523 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.181 0.819 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.157 0.843 35 H 0.258 0.742 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.435 -0.707 -10.301 13.333 hybrid contribution 1.921 -0.004 -1.391 2.372 sum -6.514 -0.711 -11.692 13.403 Atomic orbital electron populations 1.21750 0.94078 1.02184 1.02420 1.21555 0.96799 0.95610 1.01880 1.20098 0.85430 0.98005 1.03632 1.25199 1.01394 1.14521 0.97221 1.19651 0.89203 1.00268 1.00240 1.17992 0.94778 1.28632 0.87807 1.20396 0.86691 0.71551 0.82818 1.90690 1.19839 1.50353 1.84357 1.86553 1.40791 1.84380 1.15125 1.23562 0.90637 1.02373 0.89787 1.23411 0.93000 0.97121 0.95781 1.43735 1.04763 1.69382 1.09937 1.17570 0.92211 0.79581 0.79002 1.90574 1.43726 1.57216 1.55243 1.20397 0.92074 1.51790 0.94034 0.89430 1.26993 1.04209 0.90896 0.96309 1.70080 1.34822 1.30833 1.04992 0.84912 0.74872 0.79858 0.78167 1.18185 1.18725 1.17582 1.85611 0.90079 1.72144 1.04517 0.92599 0.91470 0.92215 0.91663 0.93474 0.91116 0.88419 0.81863 0.92213 0.92236 0.84344 0.74153 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.91 71.98 0.71 -1.71 16 2 C -0.12 -2.61 5.92 30.60 0.18 -2.43 16 3 C -0.03 -0.77 5.68 29.85 0.17 -0.60 16 4 C -0.27 -8.55 5.72 24.58 0.14 -8.41 16 5 C -0.07 -2.14 9.62 21.42 0.21 -1.94 16 6 C -0.28 -10.84 5.86 -20.79 -0.12 -10.96 16 7 C 0.54 20.21 7.91 70.02 0.55 20.77 16 8 O -0.56 -23.49 14.29 19.48 0.28 -23.21 16 9 O -0.35 -10.46 10.17 -57.76 -0.59 -11.05 16 10 C 0.03 0.63 10.57 113.37 1.20 1.82 16 11 C 0.13 6.17 7.18 83.86 0.60 6.77 16 12 N -0.64 -32.19 5.28 -313.47 -1.65 -33.85 16 13 C 0.50 29.01 7.50 84.93 0.64 29.64 16 14 O -0.58 -35.79 12.33 -4.92 -0.06 -35.85 16 15 C -0.55 -30.47 9.28 23.43 0.22 -30.25 16 16 H 0.09 4.49 7.85 -2.91 -0.02 4.47 16 17 C 0.04 1.93 5.50 85.34 0.47 2.40 16 18 N -0.78 -44.02 11.71 21.86 0.26 -43.77 16 19 Si 1.00 38.54 29.56 68.60 2.03 40.57 16 20 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 21 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 22 H -0.25 -9.27 7.11 99.48 0.71 -8.57 16 23 S 0.22 9.24 20.33 -56.49 -1.15 8.09 16 24 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 25 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.10 1.85 8.14 -2.39 -0.02 1.84 16 31 H 0.16 4.26 7.95 -2.91 -0.02 4.23 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.42 20.33 6.19 -92.71 -0.57 19.76 16 36 H 0.29 14.41 8.29 -92.71 -0.77 13.65 16 Total: -1.00 -69.62 327.30 4.62 -65.01 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.54 Total: 28.93 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 4.97 Total: 5.12 kcal Atomic # 7 Polarization: -76.21 SS G_CDS: -1.40 Total: -77.61 kcal Atomic # 8 Polarization: -69.74 SS G_CDS: -0.37 Total: -70.11 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Atomic # 16 Polarization: 9.24 SS G_CDS: -1.15 Total: 8.09 kcal Total: -69.62 4.62 -65.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006757553.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.537 kcal (2) G-P(sol) polarization free energy of solvation -69.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds